Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00205 * 2 1 4 4 C 1.38017 * 123.47120 * 0.02562 * 3 2 1 5 5 C 1.33617 * 115.08734 * 179.72573 * 4 3 2 6 6 C 1.50696 * 124.42916 * 180.24786 * 5 4 3 7 7 S 1.70586 * 111.14433 * 0.25253 * 5 4 3 8 8 C 1.37275 * 123.46977 * 180.21572 * 3 2 1 9 9 C 1.41722 * 125.47910 * 359.97438 * 8 3 2 10 10 O 1.21775 * 119.99815 * 0.27064 * 9 8 3 11 11 N 1.34768 * 120.00441 * 180.27408 * 9 8 3 12 12 C 1.46495 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47415 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47272 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99303 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00409 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99476 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46647 * 120.00103 * 19 17 15 22 22 H 1.48495 * 109.47043 * 240.00133 * 19 17 15 23 23 H 1.09002 * 109.46643 * 59.99734 * 1 2 3 24 24 H 1.08993 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46862 * 300.00158 * 1 2 3 26 26 H 1.08002 * 122.46033 * 0.02562 * 4 3 2 27 27 H 1.08998 * 109.47384 * 90.00390 * 6 5 4 28 28 H 1.09006 * 109.46826 * 210.00295 * 6 5 4 29 29 H 1.08995 * 109.47104 * 330.00012 * 6 5 4 30 30 H 0.97005 * 119.99593 * 0.02562 * 11 9 8 31 31 H 1.08997 * 109.47615 * 300.00350 * 12 11 9 32 32 H 1.09000 * 109.47181 * 60.00228 * 12 11 9 33 33 H 1.09005 * 109.47014 * 300.00526 * 13 12 11 34 34 H 1.09000 * 109.46611 * 60.00061 * 13 12 11 35 35 H 1.09005 * 109.47347 * 300.00097 * 14 13 12 36 36 H 1.09000 * 109.47436 * 60.00342 * 14 13 12 37 37 H 0.96999 * 119.99566 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1391 3.5000 0.0062 6 6 1.6191 4.9144 0.0133 7 16 3.7925 3.0804 0.0044 8 6 3.4095 1.3644 -0.0043 9 6 4.3568 0.3104 -0.0088 10 8 3.9794 -0.8474 -0.0140 11 7 5.6753 0.5892 -0.0072 12 6 6.6546 -0.5004 -0.0112 13 6 8.0684 0.0844 -0.0090 14 6 9.0910 -1.0535 -0.0139 15 6 10.4837 -0.4775 -0.0111 16 1 10.6250 0.5931 -0.0068 17 6 11.5771 -1.3173 -0.0152 18 7 11.4048 -2.6211 -0.0220 19 14 13.3033 -0.6033 -0.0124 20 1 13.2255 0.8796 -0.0051 21 1 14.0285 -1.0665 1.1978 22 1 14.0279 -1.0554 -1.2272 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2867 2.4660 0.0014 27 1 1.4935 5.2503 1.0426 28 1 2.3292 5.5651 -0.4972 29 1 0.6585 4.9510 -0.5006 30 1 5.9760 1.5115 -0.0026 31 1 6.5150 -1.1177 0.8761 32 1 6.5156 -1.1105 -0.9038 33 1 8.2077 0.7015 -0.8967 34 1 8.2077 0.6948 0.8833 35 1 8.9519 -1.6710 0.8736 36 1 8.9516 -1.6635 -0.9064 37 1 12.1740 -3.2120 -0.0245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172074994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -58.644378 kcal Electronic energy + Delta-G solvation = -19099.990777 eV Core-core repulsion = 15968.981671 eV Total energy + Delta-G solvation = -3131.009106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37385 -38.92681 -36.60359 -35.25245 -33.25652 -32.22118 -31.06896 -28.39169 -27.55698 -26.06066 -23.56878 -23.03511 -21.13824 -20.57032 -19.34871 -18.31561 -17.13467 -16.28639 -16.18410 -16.13656 -15.12310 -15.08041 -14.55150 -14.39196 -14.31254 -14.13963 -13.72344 -13.43849 -12.94791 -12.52433 -12.47415 -12.24851 -11.80774 -11.69036 -11.61380 -11.17705 -11.11974 -10.88819 -10.67316 -10.53267 -9.83011 -9.81028 -9.33910 -9.06172 -8.99501 -8.62546 -8.33848 -8.22298 -5.98266 -4.01061 0.30000 1.19540 1.53951 2.13393 3.27025 3.32487 3.39713 3.43338 3.49474 3.58414 4.22055 4.47526 4.74468 4.78677 4.82928 4.90173 5.03849 5.10503 5.25082 5.36205 5.37547 5.50682 5.54671 5.78761 5.86745 5.95438 6.24742 6.58159 6.67561 6.91586 7.06585 7.07026 7.68586 7.81506 7.81588 8.01185 8.42020 8.53268 9.05940 9.62909 11.13151 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.003015 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.449237 B = 9283.774949 C =10210.866517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.270 6.270 3 C 0.188 3.812 4 C -0.219 4.219 5 C -0.167 4.167 6 C -0.088 4.088 7 S 0.226 5.774 8 C -0.321 4.321 9 C 0.587 3.413 10 O -0.526 6.526 11 N -0.728 5.728 12 C 0.119 3.881 13 C -0.121 4.121 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.148 0.852 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.392 0.608 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.972 15.475 0.104 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.181 6.181 3 C 0.128 3.872 4 C -0.253 4.253 5 C -0.287 4.287 6 C -0.147 4.147 7 S 0.492 5.508 8 C -0.441 4.441 9 C 0.375 3.625 10 O -0.405 6.405 11 N -0.380 5.380 12 C -0.003 4.003 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.166 0.834 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.699 15.060 0.101 27.241 hybrid contribution -0.529 0.064 0.006 0.533 sum -23.228 15.124 0.107 27.718 Atomic orbital electron populations 1.23171 0.78537 1.04396 1.01125 1.86361 1.20702 1.24083 1.86994 1.18219 0.90258 0.85341 0.93378 1.19941 1.01804 0.90662 1.12847 1.23954 0.99311 1.00492 1.04922 1.20458 1.01830 0.88967 1.03401 1.83050 1.02614 0.95845 1.69289 1.22817 0.95475 0.98018 1.27789 1.15573 0.81820 0.87672 0.77451 1.90868 1.79595 1.20075 1.49995 1.46098 1.05670 1.10440 1.75760 1.21626 0.87813 0.88801 1.02094 1.21896 0.92246 1.00918 1.00858 1.19036 0.92123 0.92566 0.97699 1.21252 0.91035 0.92944 1.50662 0.92587 1.25035 0.99305 0.94844 0.95346 1.69981 1.30348 1.02233 1.50743 0.86529 0.84617 0.79235 0.77567 1.19752 1.21028 1.21024 0.92673 0.87858 0.92675 0.83425 0.89992 0.90615 0.90193 0.77477 0.91672 0.91673 0.92734 0.92735 0.96233 0.96226 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.94 101.05 1.00 1.19 16 2 O -0.27 -3.80 9.36 -36.57 -0.34 -4.14 16 3 C 0.19 2.50 6.70 -40.01 -0.27 2.23 16 4 C -0.22 -2.09 9.02 -41.28 -0.37 -2.46 16 5 C -0.17 -1.41 6.27 -35.93 -0.23 -1.64 16 6 C -0.09 -0.44 10.31 36.00 0.37 -0.07 16 7 S 0.23 2.26 21.94 -107.50 -2.36 -0.10 16 8 C -0.32 -4.64 6.28 -38.60 -0.24 -4.88 16 9 C 0.59 10.50 7.59 -14.93 -0.11 10.39 16 10 O -0.53 -11.44 15.84 -12.39 -0.20 -11.63 16 11 N -0.73 -12.11 5.54 -63.20 -0.35 -12.46 16 12 C 0.12 2.28 5.67 -4.04 -0.02 2.26 16 13 C -0.12 -2.48 5.27 -26.73 -0.14 -2.63 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 26 H 0.15 1.00 6.99 -52.49 -0.37 0.63 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.39 5.45 7.44 -40.82 -0.30 5.15 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -35.26 331.09 -8.36 -43.62 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.26 Total: -1.81 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.56 Total: -8.71 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.39 Total: -38.93 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.54 Total: -15.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.36 Total: -0.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.26 -8.36 -43.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172074994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.024 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds