Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.20831 * 119.99615 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00143 * 180.02562 * 8 7 6 11 11 C 1.45198 * 116.99780 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46978 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47459 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99475 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00266 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99844 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47163 * 59.99975 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47055 * 299.99848 * 17 15 13 21 21 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 22 22 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 24 24 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 25 25 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 26 26 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 27 27 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 28 28 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 29 29 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 30 30 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 31 31 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 32 32 H 1.08998 * 109.47370 * 299.99749 * 11 10 8 33 33 H 1.09003 * 109.46918 * 60.00241 * 11 10 8 34 34 H 1.09003 * 109.47442 * 300.00346 * 12 11 10 35 35 H 1.08997 * 109.46822 * 59.99721 * 12 11 10 36 36 H 0.96996 * 119.99695 * 180.02562 * 16 15 13 37 37 H 1.08002 * 126.03735 * 179.76609 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0245 4.7683 -3.0991 10 8 5.6859 6.1174 -2.5482 11 6 5.3465 6.9488 -3.6891 12 6 6.3044 8.1401 -3.7550 13 6 5.9518 9.0034 -4.9388 14 1 5.1268 8.7300 -5.5797 15 6 6.6825 10.1423 -5.2035 16 7 7.6869 10.4754 -4.4226 17 14 6.2459 11.2120 -6.6713 18 1 4.8525 11.7051 -6.5274 19 1 7.1755 12.3683 -6.7351 20 1 6.3621 10.4134 -7.9178 21 6 3.9354 -0.4006 -0.0039 22 16 2.4857 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 5.5448 1.6353 -0.0894 27 1 4.4369 2.5834 0.9312 28 1 4.3272 2.3907 -2.1132 29 1 3.2192 3.3388 -1.0925 30 1 5.1332 4.6712 -0.2509 31 1 6.2418 3.7235 -1.2714 32 1 5.4318 6.3627 -4.6041 33 1 4.3238 7.3109 -3.5834 34 1 6.2188 8.7262 -2.8400 35 1 7.3272 7.7784 -3.8603 36 1 8.2007 11.2768 -4.6086 37 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176754638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = -73.419869 kcal Electronic energy + Delta-G solvation = -18535.582296 eV Core-core repulsion = 15403.932477 eV Total energy + Delta-G solvation = -3131.649820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28718 -39.83552 -36.29693 -34.90310 -33.32539 -32.43834 -30.34158 -29.11687 -27.88736 -25.09075 -23.63749 -22.22602 -20.93214 -20.15061 -19.95449 -17.91528 -17.17809 -16.32928 -16.12554 -15.87635 -15.40518 -15.34486 -14.77050 -14.49620 -14.08486 -13.62724 -13.33633 -13.11626 -12.64748 -12.57968 -12.50209 -12.31850 -12.08950 -11.59232 -11.39032 -11.17630 -11.01951 -10.83290 -10.70627 -10.67690 -10.15939 -9.89752 -9.69820 -9.60240 -9.57359 -9.29076 -8.96956 -8.42644 -6.08912 -4.13197 0.41335 1.05891 1.42759 2.49806 2.65714 3.25520 3.31182 3.35057 3.40017 3.75623 4.40328 4.54358 4.71238 4.88468 4.93366 4.96005 5.04474 5.09885 5.21461 5.27449 5.37340 5.48908 5.53714 5.54769 5.61082 5.92071 6.04603 6.13158 6.15317 6.26771 6.67147 7.07232 7.48908 7.58247 7.64601 7.88835 8.22765 8.32281 8.92174 9.50973 11.02599 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.045849 B = 0.002191 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.548511 B =12775.656644 C =13141.768503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.466 5.466 4 C 0.078 3.922 5 C -0.045 4.045 6 C -0.100 4.100 7 C -0.115 4.115 8 C 0.453 3.547 9 O -0.519 6.519 10 O -0.359 6.359 11 C 0.075 3.925 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.262 4.262 22 S 0.103 5.897 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -24.779 12.616 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.181 5.181 4 C -0.054 4.054 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.153 4.153 8 C 0.296 3.704 9 O -0.409 6.409 10 O -0.276 6.276 11 C 0.002 3.998 12 C -0.013 4.013 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.401 4.401 22 S 0.358 5.642 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.752 -25.250 12.394 29.771 hybrid contribution 0.443 1.294 -0.939 1.659 sum -9.309 -23.956 11.456 28.139 Atomic orbital electron populations 1.20468 0.85116 1.04232 1.04109 1.27088 1.01854 0.90793 1.02842 1.66083 1.04594 1.31470 1.16001 1.20282 0.90170 0.94218 1.00686 1.20238 0.95592 0.92637 1.00020 1.21313 1.00010 0.94562 0.97946 1.21373 1.02184 0.95419 0.96300 1.23585 0.79845 0.81014 0.85937 1.90631 1.30483 1.72981 1.46804 1.86523 1.56131 1.34785 1.50135 1.23612 1.00861 0.91395 0.83906 1.19162 0.94275 0.89731 0.98088 1.20952 1.16047 1.08161 1.11340 0.92333 1.24987 0.94843 0.97509 0.96843 1.69964 1.19420 1.25553 1.37945 0.86526 0.78346 0.79728 0.82651 1.20064 1.21123 1.20073 1.26821 1.03087 0.95681 1.14477 1.83942 0.98252 1.13125 1.68901 0.89407 0.90123 0.89110 0.89864 0.89683 0.91162 0.90016 0.87768 0.87902 0.92422 0.92396 0.95370 0.95386 0.92667 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.05 0.49 7.39 -13.46 -0.10 0.39 16 3 N -0.47 -5.45 10.34 -8.06 -0.08 -5.53 16 4 C 0.08 0.81 6.08 -84.22 -0.51 0.30 16 5 C -0.04 -0.40 5.71 -27.88 -0.16 -0.56 16 6 C -0.10 -1.17 4.41 -26.73 -0.12 -1.28 16 7 C -0.11 -1.37 5.81 -27.88 -0.16 -1.53 16 8 C 0.45 8.04 7.96 36.01 0.29 8.32 16 9 O -0.52 -10.68 15.73 -18.75 -0.30 -10.97 16 10 O -0.36 -7.37 10.22 -39.26 -0.40 -7.77 16 11 C 0.07 1.72 5.40 37.16 0.20 1.92 16 12 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.26 -2.24 11.07 29.12 0.32 -1.91 16 22 S 0.10 0.79 23.18 -107.50 -2.49 -1.70 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 33 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -33.76 337.50 -8.34 -42.10 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -5.45 Total: -4.24 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.42 Total: -7.70 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.65 Total: -31.43 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.70 Total: -18.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.76 -8.34 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176754638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.320 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds