Wall clock time and date at job start Tue Mar 31 2020 05:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46975 * 2 1 4 4 C 1.38259 * 120.00222 * 270.23590 * 3 2 1 5 5 C 1.38211 * 119.99788 * 180.30553 * 4 3 2 6 6 C 1.38256 * 120.00062 * 359.45940 * 5 4 3 7 7 C 1.38214 * 120.00160 * 0.26318 * 6 5 4 8 8 S 1.76203 * 120.00224 * 179.97438 * 7 6 5 9 9 O 1.42094 * 106.39942 * 203.53751 * 8 7 6 10 10 O 1.42094 * 106.39938 * 336.45800 * 8 7 6 11 11 N 1.65603 * 107.21747 * 90.00058 * 8 7 6 12 12 C 1.46498 * 119.99974 * 64.99461 * 11 8 7 13 13 H 1.08998 * 109.47435 * 335.01073 * 12 11 8 14 14 C 1.53010 * 109.46542 * 95.00500 * 12 11 8 15 15 C 1.50697 * 109.47138 * 214.99960 * 12 11 8 16 16 H 1.07997 * 120.00401 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99613 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00359 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99882 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46924 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47124 * 119.99583 * 19 17 15 22 22 H 1.48494 * 109.47174 * 240.00067 * 19 17 15 23 23 C 1.38212 * 119.99667 * 90.00550 * 3 2 1 24 24 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46775 * 299.99842 * 1 2 3 26 26 H 1.09004 * 109.46991 * 59.99597 * 1 2 3 27 27 H 1.09004 * 109.46775 * 240.00158 * 2 1 3 28 28 H 1.08995 * 109.47247 * 120.00425 * 2 1 3 29 29 H 1.07998 * 119.99812 * 0.04290 * 4 3 2 30 30 H 1.08002 * 120.00200 * 179.74545 * 5 4 3 31 31 H 1.07999 * 120.00077 * 180.28382 * 6 5 4 32 32 H 0.96992 * 119.99612 * 245.00363 * 11 8 7 33 33 H 1.09004 * 109.46800 * 299.99781 * 14 12 11 34 34 H 1.08995 * 109.47373 * 59.99734 * 14 12 11 35 35 H 1.09005 * 109.46755 * 180.02562 * 14 12 11 36 36 H 0.96998 * 120.00187 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.00332 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2582 2.0743 -1.1973 5 6 2.7248 3.3752 -1.1972 6 6 2.9552 4.0269 0.0001 7 6 2.7241 3.3756 1.1971 8 16 3.0184 4.2060 2.7231 9 8 3.2366 3.1930 3.6954 10 8 3.9604 5.2330 2.4458 11 7 1.6094 4.9657 3.1474 12 6 0.4181 4.1750 3.4663 13 1 0.4810 3.2067 2.9696 14 6 0.3342 3.9672 4.9799 15 6 -0.8115 4.9049 2.9905 16 1 -0.7152 5.8618 2.4993 17 6 -2.0594 4.3508 3.1823 18 7 -2.1767 3.1853 3.7800 19 14 -3.5836 5.2552 2.5920 20 1 -3.1837 6.5361 1.9557 21 1 -4.3057 4.4151 1.6032 22 1 -4.4728 5.5338 3.7481 23 6 2.2628 2.0723 1.1970 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0739 1.5667 -2.1326 30 1 2.9051 3.8843 -2.1325 31 1 3.3156 5.0450 0.0002 32 1 1.5730 5.9343 3.1847 33 1 1.2236 3.4393 5.3240 34 1 0.2714 4.9353 5.4766 35 1 -0.5520 3.3784 5.2171 36 1 -3.0546 2.7954 3.9146 37 1 2.0825 1.5632 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176855052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:18 Heat of formation + Delta-G solvation = -67.101383 kcal Electronic energy + Delta-G solvation = -20782.564838 eV Core-core repulsion = 17651.189008 eV Total energy + Delta-G solvation = -3131.375830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.21715 -36.70190 -35.43206 -35.27647 -34.05389 -32.20644 -31.02967 -29.27216 -28.27051 -25.22904 -23.87900 -23.02849 -21.23034 -20.88835 -18.73476 -17.47270 -17.11416 -16.15379 -15.78491 -15.65183 -15.10199 -14.49343 -14.41131 -13.75227 -13.51218 -13.35328 -13.09662 -12.63488 -12.27725 -12.12473 -11.99270 -11.73107 -11.67979 -11.58912 -11.43604 -11.16211 -11.02793 -11.01576 -10.76312 -10.55633 -10.35493 -10.27579 -10.12646 -9.19352 -9.12595 -8.64007 -8.61303 -8.30236 -6.15660 -4.23388 0.93009 1.19106 1.48923 3.21126 3.29746 3.32844 3.55163 3.85131 4.32784 4.34358 4.68629 4.85021 5.10797 5.13208 5.16390 5.22533 5.38263 5.48744 5.63782 5.66095 5.85523 5.99006 6.14136 6.14684 6.32424 6.33346 6.40046 6.44360 6.61591 6.82343 7.04114 7.04722 7.08776 7.57054 7.69278 7.81404 8.02268 8.26158 8.79997 9.42956 10.89913 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.007770 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.081079 B = 3602.746150 C = 4655.150071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.104 4.104 4 C -0.070 4.070 5 C -0.143 4.143 6 C -0.025 4.025 7 C -0.661 4.661 8 S 2.689 3.311 9 O -0.964 6.964 10 O -0.984 6.984 11 N -1.099 6.099 12 C 0.275 3.725 13 H 0.041 0.959 14 C -0.159 4.159 15 C -0.524 4.524 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.009 4.009 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.409 0.591 33 H 0.026 0.974 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.263 0.737 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -3.434 -8.354 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.088 4.088 5 C -0.162 4.162 6 C -0.044 4.044 7 C -0.746 4.746 8 S 2.778 3.222 9 O -0.954 6.954 10 O -0.974 6.974 11 N -0.861 5.861 12 C 0.171 3.829 13 H 0.059 0.941 14 C -0.218 4.218 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.028 4.028 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.984 -3.786 -7.847 11.166 hybrid contribution -1.455 0.672 -1.012 1.896 sum 5.528 -3.114 -8.859 10.897 Atomic orbital electron populations 1.21790 0.94192 1.01689 1.03137 1.20547 0.96685 0.92036 1.02740 1.20010 1.00389 0.96978 0.93147 1.21237 0.95447 0.94571 0.97532 1.21179 1.01638 0.95326 0.98040 1.20847 0.93209 0.99139 0.91231 1.31116 1.15542 1.07184 1.20797 1.01867 0.73030 0.73467 0.73885 1.93559 1.84686 1.60083 1.57041 1.93513 1.60566 1.57262 1.86034 1.55551 1.28880 1.17863 1.83756 1.18535 0.81098 0.90367 0.92943 0.94132 1.22246 1.01557 1.00306 0.97718 1.21329 0.90330 1.06113 1.38613 0.91757 1.24898 0.98975 0.94994 0.94891 1.69881 1.23992 1.16596 1.41889 0.86453 0.82713 0.79815 0.78503 1.19726 1.20973 1.20874 1.20860 0.91002 0.92138 0.98848 0.92496 0.91330 0.92753 0.91263 0.90715 0.85810 0.85498 0.84647 0.75686 0.95543 0.94875 0.88978 0.92655 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.90 37.16 0.37 -1.59 16 2 C -0.08 -1.02 6.06 -27.88 -0.17 -1.19 16 3 C -0.10 -1.55 5.13 -104.62 -0.54 -2.09 16 4 C -0.07 -0.92 9.70 -39.58 -0.38 -1.31 16 5 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 6 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 7 C -0.66 -11.74 5.82 -39.58 -0.23 -11.97 16 8 S 2.69 51.64 5.65 -107.50 -0.61 51.04 16 9 O -0.96 -20.69 16.54 -57.17 -0.95 -21.63 16 10 O -0.98 -19.60 17.28 -57.17 -0.99 -20.59 16 11 N -1.10 -22.23 5.46 -5.88 -0.03 -22.26 16 12 C 0.27 6.52 2.76 -69.08 -0.19 6.33 16 13 H 0.04 1.01 7.23 -51.93 -0.38 0.63 16 14 C -0.16 -3.79 9.29 37.16 0.35 -3.44 16 15 C -0.52 -13.41 8.76 -34.44 -0.30 -13.71 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -23.67 11.32 55.43 0.63 -23.04 16 19 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.01 -0.16 8.56 -39.58 -0.34 -0.50 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.14 1.93 7.62 -52.49 -0.40 1.53 16 32 H 0.41 7.51 8.83 -34.47 -0.30 7.21 16 33 H 0.03 0.59 7.64 -51.93 -0.40 0.20 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.14 2.43 7.62 -52.49 -0.40 2.03 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -30.38 323.95 -9.51 -39.89 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.11 Total: 7.45 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -2.31 Total: -30.97 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.60 Total: -45.30 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.93 Total: -42.22 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 51.64 SS G_CDS: -0.61 Total: 51.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.38 -9.51 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176855052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds