Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46588 * 2 1 4 4 C 1.38256 * 120.00050 * 270.01818 * 3 2 1 5 5 C 1.38213 * 120.00132 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99662 * 359.78186 * 5 4 3 7 7 C 1.38208 * 119.99960 * 0.45547 * 6 5 4 8 8 S 1.76197 * 120.00035 * 179.79183 * 7 6 5 9 9 O 1.42101 * 106.40487 * 156.18662 * 8 7 6 10 10 O 1.42106 * 106.40322 * 23.26454 * 8 7 6 11 11 N 1.65605 * 107.21776 * 269.72556 * 8 7 6 12 12 C 1.46497 * 120.00032 * 65.00008 * 11 8 7 13 13 H 1.09007 * 109.47078 * 24.99629 * 12 11 8 14 14 C 1.53000 * 109.47021 * 265.00209 * 12 11 8 15 15 C 1.50694 * 109.47115 * 144.99990 * 12 11 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38213 * 119.99620 * 90.00764 * 3 2 1 24 24 H 1.08997 * 109.47422 * 59.99806 * 1 2 3 25 25 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47176 * 299.99214 * 1 2 3 27 27 H 1.08998 * 109.46796 * 240.00493 * 2 1 3 28 28 H 1.08997 * 109.47422 * 120.00194 * 2 1 3 29 29 H 1.08004 * 120.00123 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99973 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.99588 * 180.25037 * 6 5 4 32 32 H 0.96997 * 119.99799 * 244.99417 * 11 8 7 33 33 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 34 34 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 35 35 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.00489 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7223 3.3761 -1.1973 6 6 2.9482 4.0294 0.0001 7 6 2.7230 3.3760 1.1970 8 16 3.0161 4.2068 2.7229 9 8 2.2087 3.5570 3.6951 10 8 2.9305 5.5978 2.4454 11 7 4.5891 3.9107 3.1479 12 6 5.6813 4.4242 2.3176 13 1 5.3372 5.2983 1.7645 14 6 6.1264 3.3408 1.3333 15 6 6.8419 4.8112 3.1973 16 1 6.7729 4.6875 4.2680 17 6 7.9918 5.3243 2.6355 18 7 8.0758 5.4754 1.3317 19 14 9.4303 5.8046 3.7261 20 1 9.2910 7.2263 4.1316 21 1 9.4433 4.9437 4.9361 22 1 10.7003 5.6255 2.9776 23 6 2.2626 2.0723 1.1970 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0824 1.5636 -2.1327 30 1 2.9024 3.8851 -2.1326 31 1 3.3039 5.0491 0.0000 32 1 4.7872 3.3974 3.9467 33 1 5.2868 3.0609 0.6970 34 1 6.9387 3.7229 0.7151 35 1 6.4704 2.4667 1.8862 36 1 8.8847 5.8367 0.9366 37 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176855063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -66.045167 kcal Electronic energy + Delta-G solvation = -20542.760337 eV Core-core repulsion = 17411.430308 eV Total energy + Delta-G solvation = -3131.330029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31242 -36.69689 -35.44967 -35.27967 -34.21552 -32.18798 -31.09504 -29.43159 -28.29161 -25.25051 -24.04499 -23.08813 -21.28543 -20.91132 -18.79140 -17.43849 -17.24067 -16.15461 -15.74708 -15.70919 -15.08732 -14.63332 -14.43266 -13.83463 -13.61015 -13.54954 -13.23204 -12.68537 -12.30702 -12.18219 -12.06097 -11.95307 -11.71166 -11.54466 -11.45869 -11.25436 -11.15322 -10.98164 -10.90172 -10.66618 -10.36690 -10.30026 -10.09498 -9.26280 -9.14884 -8.68675 -8.62850 -8.28838 -6.13512 -4.20366 0.88889 1.15088 1.41686 3.26669 3.33130 3.35749 3.50646 3.84532 4.31759 4.36887 4.57900 4.75776 5.00047 5.04851 5.10909 5.19521 5.21989 5.34621 5.45720 5.56891 5.69053 5.75723 5.96369 6.01939 6.10308 6.28417 6.34288 6.38358 6.50208 6.76445 6.84016 6.97464 7.00260 7.56188 7.65973 7.85684 8.00184 8.26105 8.82212 9.45475 10.92733 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.005129 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.080137 B = 5457.930957 C = 5880.858873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.111 4.111 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.015 4.015 7 C -0.661 4.661 8 S 2.688 3.312 9 O -0.983 6.983 10 O -0.962 6.962 11 N -1.098 6.098 12 C 0.268 3.732 13 H 0.051 0.949 14 C -0.159 4.159 15 C -0.521 4.521 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.286 1.286 23 C -0.019 4.019 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.409 0.591 33 H 0.015 0.985 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -9.020 -5.278 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.088 4.088 5 C -0.157 4.157 6 C -0.034 4.034 7 C -0.746 4.746 8 S 2.776 3.224 9 O -0.973 6.973 10 O -0.952 6.952 11 N -0.860 5.860 12 C 0.164 3.836 13 H 0.069 0.931 14 C -0.219 4.219 15 C -0.561 4.561 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.212 1.212 23 C -0.038 4.038 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.243 0.757 33 H 0.034 0.966 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.246 -8.350 -5.149 14.923 hybrid contribution 1.198 -0.399 0.093 1.266 sum -10.048 -8.749 -5.056 14.250 Atomic orbital electron populations 1.21778 0.94789 1.01659 1.02351 1.20531 0.96136 0.92362 1.03060 1.19948 1.01312 0.96641 0.93239 1.21244 0.95518 0.94545 0.97476 1.21249 1.00967 0.95176 0.98313 1.20990 0.91734 0.99581 0.91102 1.31184 1.14821 1.07542 1.21088 1.01901 0.73038 0.74119 0.73328 1.93514 1.68135 1.77114 1.58542 1.93570 1.86289 1.29888 1.85405 1.55514 1.22790 1.70500 1.37152 1.18622 0.84171 0.92005 0.88792 0.93143 1.22301 1.01035 0.98927 0.99615 1.21226 0.98403 1.42812 0.93609 0.91709 1.24911 0.98533 0.95228 0.95201 1.69862 1.28353 1.44850 1.09637 0.86440 0.81298 0.79012 0.80313 1.20490 1.19828 1.21162 1.20731 0.92599 0.92019 0.98475 0.92647 0.92391 0.92313 0.90977 0.90749 0.85816 0.85261 0.84137 0.75685 0.96634 0.88842 0.94784 0.92602 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.94 16 2 C -0.08 -0.82 6.06 -27.88 -0.17 -0.99 16 3 C -0.11 -1.42 5.13 -104.62 -0.54 -1.96 16 4 C -0.07 -0.85 9.70 -39.58 -0.38 -1.24 16 5 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 6 C -0.01 -0.24 8.60 -39.58 -0.34 -0.58 16 7 C -0.66 -11.21 5.06 -39.58 -0.20 -11.41 16 8 S 2.69 51.67 5.72 -107.50 -0.61 51.05 16 9 O -0.98 -19.55 17.28 -57.17 -0.99 -20.53 16 10 O -0.96 -21.33 16.61 -57.17 -0.95 -22.28 16 11 N -1.10 -22.26 5.46 -5.88 -0.03 -22.29 16 12 C 0.27 6.40 2.89 -69.09 -0.20 6.20 16 13 H 0.05 1.31 7.50 -51.92 -0.39 0.92 16 14 C -0.16 -3.59 9.29 37.16 0.35 -3.24 16 15 C -0.52 -13.66 8.76 -34.44 -0.30 -13.96 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.15 11.32 55.43 0.63 -23.52 16 19 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.02 -0.29 9.18 -39.58 -0.36 -0.65 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.14 2.33 7.61 -52.49 -0.40 1.93 16 32 H 0.41 7.52 8.83 -34.47 -0.30 7.22 16 33 H 0.01 0.30 6.18 -51.93 -0.32 -0.02 16 34 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 37 H 0.14 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -31.00 321.97 -9.45 -40.46 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.05 Total: 6.14 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.27 Total: -29.45 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.60 Total: -45.81 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.94 Total: -42.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 51.67 SS G_CDS: -0.61 Total: 51.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.00 -9.45 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176855063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds