Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46588 * 2 1 4 4 C 1.38256 * 120.00050 * 270.01818 * 3 2 1 5 5 C 1.38213 * 120.00132 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.99662 * 359.78186 * 5 4 3 7 7 C 1.38208 * 119.99960 * 0.45547 * 6 5 4 8 8 S 1.76197 * 120.00035 * 179.79183 * 7 6 5 9 9 O 1.42101 * 106.40487 * 156.18662 * 8 7 6 10 10 O 1.42106 * 106.40322 * 23.26454 * 8 7 6 11 11 N 1.65605 * 107.21776 * 269.72556 * 8 7 6 12 12 C 1.46497 * 120.00032 * 65.00008 * 11 8 7 13 13 H 1.09007 * 109.47078 * 24.99629 * 12 11 8 14 14 C 1.53000 * 109.47021 * 265.00209 * 12 11 8 15 15 C 1.50694 * 109.47115 * 144.99990 * 12 11 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38213 * 119.99620 * 90.00764 * 3 2 1 24 24 H 1.08997 * 109.47422 * 59.99806 * 1 2 3 25 25 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47176 * 299.99214 * 1 2 3 27 27 H 1.08998 * 109.46796 * 240.00493 * 2 1 3 28 28 H 1.08997 * 109.47422 * 120.00194 * 2 1 3 29 29 H 1.08004 * 120.00123 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99973 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.99588 * 180.25037 * 6 5 4 32 32 H 0.96997 * 119.99799 * 244.99417 * 11 8 7 33 33 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 34 34 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 35 35 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.00489 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7223 3.3761 -1.1973 6 6 2.9482 4.0294 0.0001 7 6 2.7230 3.3760 1.1970 8 16 3.0161 4.2068 2.7229 9 8 2.2087 3.5570 3.6951 10 8 2.9305 5.5978 2.4454 11 7 4.5891 3.9107 3.1479 12 6 5.6813 4.4242 2.3176 13 1 5.3372 5.2983 1.7645 14 6 6.1264 3.3408 1.3333 15 6 6.8419 4.8112 3.1973 16 1 6.7729 4.6875 4.2680 17 6 7.9918 5.3243 2.6355 18 7 8.0758 5.4754 1.3317 19 14 9.4303 5.8046 3.7261 20 1 9.2910 7.2263 4.1316 21 1 9.4433 4.9437 4.9361 22 1 10.7003 5.6255 2.9776 23 6 2.2626 2.0723 1.1970 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0824 1.5636 -2.1327 30 1 2.9024 3.8851 -2.1326 31 1 3.3039 5.0491 0.0000 32 1 4.7872 3.3974 3.9467 33 1 5.2868 3.0609 0.6970 34 1 6.9387 3.7229 0.7151 35 1 6.4704 2.4667 1.8862 36 1 8.8847 5.8367 0.9366 37 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176855063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -86.555669 kcal Electronic energy + Delta-G solvation = -20543.649739 eV Core-core repulsion = 17411.430308 eV Total energy + Delta-G solvation = -3132.219431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38943 -38.33063 -37.26825 -36.92541 -35.12165 -34.12614 -32.21988 -30.41066 -30.08246 -27.24179 -24.92963 -24.24542 -22.84951 -22.22725 -20.34857 -19.13790 -18.59549 -17.81490 -17.23085 -16.95555 -16.71985 -16.05487 -15.56192 -15.30644 -14.76937 -14.53713 -14.44438 -14.27806 -14.02854 -13.59137 -13.32645 -13.20746 -13.18636 -13.14390 -12.95032 -12.81833 -12.72596 -12.42731 -12.22430 -12.09786 -11.99249 -11.77564 -11.55862 -11.13514 -10.59295 -10.33323 -10.07175 -9.76959 -8.14461 -6.28251 -0.53053 -0.13040 0.31562 1.45355 1.46867 1.56251 2.13004 2.44500 2.52687 2.84501 3.15405 3.37133 3.77337 3.87774 4.05406 4.23473 4.28545 4.47290 4.52211 4.53876 4.63149 4.77413 4.90089 5.02411 5.04035 5.05140 5.10291 5.14217 5.17173 5.32411 5.39879 5.51183 5.58606 5.75991 5.91248 6.03281 6.11772 6.40823 6.81533 7.40903 8.90987 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.005129 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.080137 B = 5457.930957 C = 5880.858873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.107 4.107 4 C -0.060 4.060 5 C -0.138 4.138 6 C -0.042 4.042 7 C -0.670 4.670 8 S 2.699 3.301 9 O -0.992 6.992 10 O -0.999 6.999 11 N -1.100 6.100 12 C 0.274 3.726 13 H 0.022 0.978 14 C -0.145 4.145 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.962 3.038 20 H -0.280 1.280 21 H -0.266 1.266 22 H -0.280 1.280 23 C -0.034 4.034 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.125 0.875 32 H 0.417 0.583 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -11.053 -6.435 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.078 4.078 5 C -0.156 4.156 6 C -0.062 4.062 7 C -0.760 4.760 8 S 2.792 3.208 9 O -0.982 6.982 10 O -0.990 6.990 11 N -0.860 5.860 12 C 0.168 3.832 13 H 0.040 0.960 14 C -0.205 4.205 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.182 4.182 18 N -0.551 5.551 19 Si 0.787 3.213 20 H -0.206 1.206 21 H -0.191 1.191 22 H -0.206 1.206 23 C -0.053 4.053 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.143 0.857 32 H 0.252 0.748 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.646 -10.371 -6.248 16.799 hybrid contribution 1.218 0.169 0.366 1.283 sum -10.427 -10.201 -5.882 15.729 Atomic orbital electron populations 1.21779 0.93966 1.02788 1.01972 1.20636 0.96729 0.90305 1.04393 1.20370 0.99812 0.98065 0.92525 1.21733 0.93283 0.93838 0.98917 1.21590 1.00000 0.95901 0.98126 1.21049 0.93447 0.99443 0.92236 1.30606 1.17525 1.08565 1.19335 1.01203 0.72306 0.73362 0.73902 1.93489 1.67940 1.77038 1.59766 1.93514 1.86563 1.32724 1.86162 1.55319 1.22547 1.70633 1.37541 1.18328 0.84290 0.91631 0.88916 0.96048 1.22098 1.00900 0.98308 0.99193 1.21601 0.99500 1.43232 0.94028 0.91729 1.25665 1.00904 0.95178 0.96421 1.69976 1.28988 1.45237 1.10898 0.85499 0.78393 0.78486 0.78892 1.20559 1.19077 1.20564 1.20955 0.92974 0.91347 1.00039 0.92191 0.90561 0.93584 0.88758 0.90403 0.81813 0.82655 0.85728 0.74837 0.94556 0.91143 0.94356 0.92484 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.08 -1.33 6.06 29.85 0.18 -1.15 16 3 C -0.11 -2.43 5.13 -19.87 -0.10 -2.54 16 4 C -0.06 -1.24 9.70 22.27 0.22 -1.03 16 5 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 6 C -0.04 -1.38 8.60 22.27 0.19 -1.18 16 7 C -0.67 -22.78 5.06 22.27 0.11 -22.67 16 8 S 2.70 106.95 5.72 -56.49 -0.32 106.63 16 9 O -0.99 -40.05 17.28 -128.00 -2.21 -42.26 16 10 O -1.00 -46.53 16.61 -128.00 -2.13 -48.66 16 11 N -1.10 -45.70 5.46 -172.53 -0.94 -46.64 16 12 C 0.27 13.40 2.89 44.24 0.13 13.53 16 13 H 0.02 1.18 7.50 -2.38 -0.02 1.16 16 14 C -0.15 -6.61 9.29 71.98 0.67 -5.94 16 15 C -0.54 -29.01 8.76 25.60 0.22 -28.78 16 16 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 17 C 0.02 1.00 5.30 84.66 0.45 1.45 16 18 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 19 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.03 -0.97 9.18 22.27 0.20 -0.77 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 28 H 0.08 1.21 8.09 -2.39 -0.02 1.20 16 29 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.12 4.35 7.61 -2.91 -0.02 4.33 16 32 H 0.42 15.62 8.83 -96.75 -0.85 14.77 16 33 H 0.04 1.45 6.18 -2.39 -0.01 1.43 16 34 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.14 3.77 7.62 -2.91 -0.02 3.75 16 Total: -1.00 -67.11 321.97 0.09 -67.02 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.22 Total: 23.29 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 3.21 Total: -53.69 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -0.70 Total: -96.67 kcal Atomic # 8 Polarization: -86.58 SS G_CDS: -4.34 Total: -90.92 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 106.95 SS G_CDS: -0.32 Total: 106.63 kcal Total: -67.11 0.09 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176855063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds