Wall clock time and date at job start Tue Mar 31 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47093 * 2 1 4 4 C 1.38258 * 120.00117 * 270.87403 * 3 2 1 5 5 C 1.38207 * 120.00162 * 179.72166 * 4 3 2 6 6 C 1.38257 * 120.00123 * 0.27483 * 5 4 3 7 7 C 1.38222 * 119.99755 * 359.97438 * 6 5 4 8 8 C 1.38218 * 120.00233 * 91.05957 * 3 2 1 9 9 S 1.76204 * 119.99881 * 0.04380 * 8 3 2 10 10 O 1.42093 * 106.40336 * 178.45150 * 9 8 3 11 11 O 1.42101 * 106.40071 * 311.37741 * 9 8 3 12 12 N 1.65603 * 107.21535 * 64.91171 * 9 8 3 13 13 C 1.46504 * 119.99961 * 65.16403 * 12 9 8 14 14 H 1.08997 * 109.46807 * 334.31710 * 13 12 9 15 15 C 1.52999 * 109.47211 * 94.31605 * 13 12 9 16 16 C 1.50699 * 109.47023 * 214.31945 * 13 12 9 17 17 H 1.08003 * 119.99749 * 354.37931 * 16 13 12 18 18 C 1.37876 * 120.00273 * 174.38270 * 16 13 12 19 19 N 1.31517 * 119.99585 * 0.99190 * 18 16 13 20 20 Si 1.86799 * 120.00181 * 180.98703 * 18 16 13 21 21 H 1.48500 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46828 * 120.00196 * 20 18 16 23 23 H 1.48505 * 109.47027 * 239.99895 * 20 18 16 24 24 H 1.09005 * 109.47031 * 187.20025 * 1 2 3 25 25 H 1.08999 * 109.47050 * 307.19598 * 1 2 3 26 26 H 1.09000 * 109.47184 * 67.19990 * 1 2 3 27 27 H 1.09005 * 109.47049 * 239.99884 * 2 1 3 28 28 H 1.09000 * 109.46773 * 120.00015 * 2 1 3 29 29 H 1.08001 * 120.00046 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.00175 * 180.25234 * 5 4 3 31 31 H 1.07999 * 120.00534 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.99607 * 179.97438 * 7 6 5 33 33 H 0.96999 * 119.99895 * 245.15521 * 12 9 8 34 34 H 1.09002 * 109.46899 * 179.97438 * 15 13 12 35 35 H 1.08995 * 109.47014 * 300.00036 * 15 13 12 36 36 H 1.08997 * 109.47149 * 60.00314 * 15 13 12 37 37 H 0.96997 * 119.99486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2456 2.0786 -1.1972 5 6 2.7008 3.3836 -1.1971 6 6 2.9483 4.0293 0.0000 7 6 2.7401 3.3699 1.1969 8 6 2.2836 2.0650 1.1968 9 16 2.0176 1.2246 2.7225 10 8 2.3965 2.1295 3.7504 11 8 0.7250 0.6404 2.6387 12 7 3.0952 -0.0314 2.7845 13 6 4.5335 0.2399 2.8472 14 1 4.7395 1.2126 2.4006 15 6 4.9889 0.2426 4.3078 16 6 5.2796 -0.8285 2.0903 17 1 4.7466 -1.6774 1.6881 18 6 6.6426 -0.7223 1.9112 19 7 7.2945 0.3014 2.4178 20 14 7.5631 -2.0325 0.9493 21 1 6.6072 -3.0709 0.4876 22 1 8.2239 -1.4108 -0.2262 23 1 8.5901 -2.6571 1.8216 24 1 -0.3633 -1.0196 0.1288 25 1 -0.3633 0.6213 0.8186 26 1 -0.3633 0.3982 -0.9474 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0525 1.5742 -2.1324 30 1 2.8634 3.8989 -2.1323 31 1 3.3044 5.0489 0.0002 32 1 2.9339 3.8742 2.1320 33 1 2.7740 -0.9466 2.7795 34 1 6.0591 0.4439 4.3543 35 1 4.4492 1.0153 4.8552 36 1 4.7829 -0.7302 4.7544 37 1 8.2534 0.3759 2.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186808519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:21 Heat of formation + Delta-G solvation = -60.331850 kcal Electronic energy + Delta-G solvation = -21215.097269 eV Core-core repulsion = 18084.014989 eV Total energy + Delta-G solvation = -3131.082281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21521 -36.78761 -35.50170 -35.27144 -33.86760 -32.18433 -31.01025 -29.19149 -28.34709 -25.20852 -23.86303 -22.98021 -20.98256 -20.93312 -18.92519 -17.55446 -17.11200 -16.28400 -15.64230 -15.54052 -15.02285 -14.42478 -14.34516 -13.76231 -13.58661 -13.34313 -13.02763 -12.62489 -12.30344 -12.13100 -11.89571 -11.73015 -11.68655 -11.54740 -11.24597 -11.18397 -11.02529 -10.88559 -10.64627 -10.52529 -10.37687 -10.26099 -10.08812 -9.16562 -9.11560 -8.66414 -8.59612 -8.28858 -6.15610 -4.22439 0.95823 1.20512 1.51780 3.21646 3.30125 3.32693 3.58407 3.82708 4.31953 4.33297 4.75004 4.90956 5.00342 5.16791 5.18094 5.27645 5.48042 5.57687 5.67463 5.73542 5.96217 6.07024 6.14709 6.21604 6.31851 6.38549 6.51748 6.55049 6.66916 6.79892 7.04166 7.06666 7.08125 7.55593 7.67027 7.81284 7.97685 8.25135 8.80979 9.43582 10.91626 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.007334 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.107569 B = 3817.083006 C = 4185.338829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.030 3.970 4 C -0.144 4.144 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.017 4.017 8 C -0.664 4.664 9 S 2.688 3.312 10 O -0.968 6.968 11 O -0.976 6.976 12 N -1.100 6.100 13 C 0.275 3.725 14 H 0.044 0.956 15 C -0.155 4.155 16 C -0.523 4.523 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.408 0.592 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 3.377 -6.093 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.029 3.971 4 C -0.163 4.163 5 C -0.087 4.087 6 C -0.169 4.169 7 C -0.037 4.037 8 C -0.750 4.750 9 S 2.777 3.223 10 O -0.958 6.958 11 O -0.966 6.966 12 N -0.862 5.862 13 C 0.171 3.829 14 H 0.062 0.938 15 C -0.214 4.214 16 C -0.563 4.563 17 H 0.083 0.917 18 C -0.139 4.139 19 N -0.524 5.524 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.491 3.882 -5.448 11.612 hybrid contribution 1.086 -0.841 -1.361 1.934 sum -8.405 3.040 -6.809 11.237 Atomic orbital electron populations 1.21842 0.93367 1.02976 1.02309 1.20931 0.97450 0.91930 1.04384 1.19513 0.90680 0.95011 0.91876 1.21077 1.02302 0.95313 0.97570 1.21342 0.94712 0.94504 0.98100 1.21197 1.02593 1.00531 0.92534 1.20963 0.91095 0.92197 0.99400 1.30915 1.16310 1.07447 1.20340 1.01932 0.72906 0.73614 0.73852 1.93537 1.83578 1.65211 1.53454 1.93525 1.38411 1.77318 1.87328 1.55615 1.20163 1.20132 1.90248 1.18524 0.73067 0.97483 0.93820 0.93824 1.22201 1.03341 0.98554 0.97341 1.21288 0.92549 1.07444 1.35002 0.91736 1.24919 0.97496 0.95848 0.95595 1.69922 1.08782 1.29255 1.44406 0.86458 0.79806 0.81558 0.79688 1.19682 1.20999 1.20893 0.92125 0.89913 0.93426 0.89888 0.90218 0.85592 0.85752 0.85477 0.84174 0.75769 0.89857 0.95382 0.94767 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.37 37.16 0.35 -1.69 16 2 C -0.11 -1.66 5.30 -27.88 -0.15 -1.81 16 3 C 0.03 0.50 5.12 -104.62 -0.54 -0.03 16 4 C -0.14 -2.07 9.71 -39.59 -0.38 -2.45 16 5 C -0.07 -0.91 10.05 -39.59 -0.40 -1.31 16 6 C -0.15 -2.15 10.05 -39.58 -0.40 -2.54 16 7 C -0.02 -0.29 9.55 -39.58 -0.38 -0.67 16 8 C -0.66 -11.98 5.74 -39.59 -0.23 -12.21 16 9 S 2.69 51.54 4.85 -107.50 -0.52 51.02 16 10 O -0.97 -20.91 16.16 -57.17 -0.92 -21.84 16 11 O -0.98 -18.55 14.11 -57.17 -0.81 -19.36 16 12 N -1.10 -22.04 4.36 -5.88 -0.03 -22.07 16 13 C 0.28 6.58 2.66 -69.08 -0.18 6.39 16 14 H 0.04 1.13 7.86 -51.93 -0.41 0.72 16 15 C -0.15 -3.70 9.35 37.16 0.35 -3.35 16 16 C -0.52 -13.34 8.69 -34.44 -0.30 -13.63 16 17 H 0.06 1.59 7.80 -52.48 -0.41 1.18 16 18 C 0.06 1.69 5.33 -17.82 -0.10 1.60 16 19 N -0.89 -24.18 11.70 55.43 0.65 -23.53 16 20 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.29 6.07 -51.93 -0.32 0.97 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 28 H 0.08 1.28 5.00 -51.93 -0.26 1.02 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 2.27 7.34 -52.49 -0.38 1.88 16 33 H 0.41 7.32 8.38 -34.47 -0.29 7.03 16 34 H 0.08 2.14 6.49 -51.93 -0.34 1.80 16 35 H 0.03 0.63 7.56 -51.93 -0.39 0.24 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -30.26 314.45 -9.15 -39.41 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.89 Total: 8.04 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -2.35 Total: -31.71 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.62 Total: -45.59 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.73 Total: -41.19 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.52 Total: 51.02 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.26 -9.15 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186808519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.925 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds