Wall clock time and date at job start Tue Mar 31 2020 05:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47061 * 2 1 4 4 C 1.38251 * 120.00251 * 269.98053 * 3 2 1 5 5 C 1.38210 * 119.99871 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.00371 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99471 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.99505 * 90.00636 * 3 2 1 9 9 S 1.76202 * 120.00214 * 359.97438 * 8 3 2 10 10 O 1.42099 * 106.39984 * 177.25027 * 9 8 3 11 11 O 1.42100 * 106.39935 * 310.16779 * 9 8 3 12 12 N 1.65597 * 107.22046 * 63.71224 * 9 8 3 13 13 C 1.46504 * 120.00291 * 64.63910 * 12 9 8 14 14 H 1.08995 * 109.46624 * 23.49470 * 13 12 9 15 15 C 1.53005 * 109.47035 * 263.49865 * 13 12 9 16 16 C 1.50693 * 109.47246 * 143.49516 * 13 12 9 17 17 H 1.08000 * 120.00069 * 34.33630 * 16 13 12 18 18 C 1.37874 * 120.00367 * 214.33648 * 16 13 12 19 19 N 1.31508 * 120.00345 * 183.79717 * 18 16 13 20 20 Si 1.86806 * 119.99560 * 3.79438 * 18 16 13 21 21 H 1.48499 * 109.46987 * 93.59038 * 20 18 16 22 22 H 1.48509 * 109.46966 * 213.58799 * 20 18 16 23 23 H 1.48497 * 109.47060 * 333.58770 * 20 18 16 24 24 H 1.09007 * 109.46550 * 306.86755 * 1 2 3 25 25 H 1.09001 * 109.47119 * 66.86212 * 1 2 3 26 26 H 1.08999 * 109.47127 * 186.87178 * 1 2 3 27 27 H 1.09001 * 109.46863 * 240.00554 * 2 1 3 28 28 H 1.08996 * 109.47307 * 120.00632 * 2 1 3 29 29 H 1.08002 * 120.00040 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00027 * 179.97438 * 5 4 3 31 31 H 1.07996 * 120.00481 * 180.29980 * 6 5 4 32 32 H 1.08004 * 119.99865 * 180.02562 * 7 6 5 33 33 H 0.96997 * 120.00107 * 244.64445 * 12 9 8 34 34 H 1.09001 * 109.46866 * 185.41451 * 15 13 12 35 35 H 1.08997 * 109.46825 * 305.41392 * 15 13 12 36 36 H 1.08995 * 109.47101 * 65.41331 * 15 13 12 37 37 H 0.97003 * 119.99913 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2632 2.0725 -1.1973 5 6 2.7244 3.3754 -1.1972 6 6 2.9544 4.0273 0.0002 7 6 2.7236 3.3757 1.1971 8 6 2.2628 2.0723 1.1970 9 16 1.9686 1.2417 2.7230 10 8 2.3567 2.1424 3.7513 11 8 0.6656 0.6824 2.6306 12 7 3.0213 -0.0345 2.7974 13 6 4.4646 0.2091 2.8592 14 1 4.6479 1.2068 3.2578 15 6 5.0602 0.1039 1.4538 16 6 5.1090 -0.8163 3.7560 17 1 4.7212 -1.8237 3.7904 18 6 6.1939 -0.4685 4.5326 19 7 6.8026 -1.3808 5.2582 20 14 6.7990 1.2987 4.5539 21 1 6.1675 2.0245 5.6851 22 1 8.2749 1.3146 4.7178 23 1 6.4357 1.9617 3.2758 24 1 -0.3633 0.6166 0.8222 25 1 -0.3633 0.4038 -0.9450 26 1 -0.3633 -1.0203 0.1230 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0831 1.5634 -2.1326 30 1 2.9051 3.8843 -2.1325 31 1 3.3101 5.0469 0.0003 32 1 2.9029 3.8851 2.1324 33 1 2.6823 -0.9433 2.7999 34 1 6.1453 0.1894 1.5118 35 1 4.7944 -0.8590 1.0177 36 1 4.6653 0.9064 0.8309 37 1 7.5656 -1.1360 5.8049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186808538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:23 Heat of formation + Delta-G solvation = -56.109081 kcal Electronic energy + Delta-G solvation = -21308.158991 eV Core-core repulsion = 18177.259823 eV Total energy + Delta-G solvation = -3130.899168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42620 -36.87091 -35.72238 -35.35089 -34.00690 -32.23503 -31.19442 -29.37289 -29.07607 -25.32809 -24.01893 -23.14975 -21.13537 -20.78793 -19.12919 -17.86496 -17.31994 -16.26004 -15.96878 -15.78040 -15.15191 -14.52206 -14.43341 -13.86018 -13.66410 -13.44899 -13.25426 -12.81477 -12.58042 -12.40116 -12.03918 -11.96028 -11.87271 -11.78185 -11.55476 -11.38098 -11.08444 -11.02231 -10.80233 -10.74722 -10.50047 -10.37305 -9.83510 -9.36055 -9.25643 -8.79077 -8.72181 -8.50821 -6.23082 -4.24053 0.79176 1.03800 1.31703 3.23682 3.31763 3.36809 3.42351 3.69722 4.20763 4.31194 4.57795 4.74159 4.83586 5.01755 5.10160 5.13343 5.32442 5.43704 5.50284 5.56770 5.78115 5.92823 5.98862 6.02737 6.05169 6.17397 6.25979 6.33558 6.37170 6.44479 6.55241 6.58426 6.87276 7.08222 7.10899 7.45101 7.87507 8.35737 8.80357 9.37398 10.88764 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.007148 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.841715 B = 3915.989206 C = 4293.905766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.028 3.972 4 C -0.143 4.143 5 C -0.069 4.069 6 C -0.149 4.149 7 C -0.021 4.021 8 C -0.667 4.667 9 S 2.676 3.324 10 O -0.966 6.966 11 O -0.971 6.971 12 N -1.092 6.092 13 C 0.235 3.765 14 H 0.051 0.949 15 C -0.157 4.157 16 C -0.514 4.514 17 H 0.082 0.918 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.865 3.135 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.260 1.260 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.412 0.588 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 7.219 -13.339 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.026 3.974 4 C -0.162 4.162 5 C -0.087 4.087 6 C -0.168 4.168 7 C -0.040 4.040 8 C -0.752 4.752 9 S 2.766 3.234 10 O -0.956 6.956 11 O -0.961 6.961 12 N -0.854 5.854 13 C 0.131 3.869 14 H 0.069 0.931 15 C -0.217 4.217 16 C -0.555 4.555 17 H 0.100 0.900 18 C -0.126 4.126 19 N -0.523 5.523 20 Si 0.692 3.308 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.184 1.184 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.247 0.753 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.687 7.631 -12.591 17.095 hybrid contribution 0.813 0.710 -0.684 1.278 sum -7.874 8.341 -13.275 17.544 Atomic orbital electron populations 1.21883 0.93104 1.03234 1.02592 1.20976 0.97877 0.91815 1.04271 1.19537 0.90853 0.95164 0.91802 1.21098 1.02158 0.95376 0.97581 1.21362 0.94747 0.94463 0.98125 1.21220 1.02580 1.00513 0.92491 1.20996 0.91258 0.92260 0.99462 1.31053 1.16217 1.07394 1.20542 1.02429 0.73292 0.73880 0.73825 1.93546 1.83408 1.65415 1.53239 1.93524 1.37496 1.77959 1.87104 1.55795 1.18880 1.20679 1.90022 1.19050 0.75757 0.98274 0.93866 0.93130 1.22419 1.01165 0.99897 0.98175 1.20998 1.13441 0.97556 1.23460 0.89957 1.24974 0.96069 0.97253 0.94299 1.69876 1.21292 1.33437 1.27686 0.87013 0.78229 0.85702 0.79902 1.19372 1.20908 1.18405 0.89550 0.93370 0.91974 0.89891 0.90190 0.85495 0.85660 0.85414 0.84166 0.75285 0.92371 0.92864 0.95490 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.38 37.16 0.35 -1.56 16 2 C -0.11 -1.48 5.31 -27.88 -0.15 -1.62 16 3 C 0.03 0.40 4.82 -104.62 -0.50 -0.11 16 4 C -0.14 -1.73 9.70 -39.59 -0.38 -2.12 16 5 C -0.07 -0.77 10.05 -39.58 -0.40 -1.17 16 6 C -0.15 -1.85 10.05 -39.58 -0.40 -2.25 16 7 C -0.02 -0.31 9.55 -39.59 -0.38 -0.69 16 8 C -0.67 -10.88 5.03 -39.58 -0.20 -11.08 16 9 S 2.68 50.25 4.90 -107.50 -0.53 49.73 16 10 O -0.97 -21.23 16.33 -57.17 -0.93 -22.16 16 11 O -0.97 -18.18 14.12 -57.17 -0.81 -18.99 16 12 N -1.09 -21.25 4.24 -5.88 -0.02 -21.27 16 13 C 0.24 5.27 2.49 -69.08 -0.17 5.10 16 14 H 0.05 1.20 4.55 -51.93 -0.24 0.97 16 15 C -0.16 -3.09 9.50 37.16 0.35 -2.73 16 16 C -0.51 -13.61 9.12 -34.44 -0.31 -13.92 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 20 Si 0.87 20.97 27.23 -169.99 -4.63 16.34 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -5.91 6.48 56.52 0.37 -5.54 16 24 H 0.09 1.28 5.89 -51.92 -0.31 0.97 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.08 1.13 5.01 -51.93 -0.26 0.87 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.14 2.09 7.34 -52.48 -0.39 1.70 16 33 H 0.41 7.24 8.40 -34.47 -0.29 6.95 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.47 6.96 -51.93 -0.36 0.11 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -31.58 311.27 -8.56 -40.14 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.81 Total: 6.73 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -2.29 Total: -30.06 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.75 Total: -46.41 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.74 Total: -41.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.63 Total: 16.34 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.53 Total: 49.73 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.58 -8.56 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186808538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.973 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds