Wall clock time and date at job start Tue Mar 31 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50710 * 109.46770 * 2 1 4 4 C 1.38254 * 120.00064 * 261.73282 * 3 2 1 5 5 C 1.38203 * 120.00151 * 180.27736 * 4 3 2 6 6 C 1.38255 * 119.99949 * 359.74799 * 5 4 3 7 7 C 1.38218 * 119.99921 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99862 * 81.48442 * 3 2 1 9 9 S 1.76196 * 120.00041 * 359.97438 * 8 3 2 10 10 O 1.42096 * 106.40313 * 52.34880 * 9 8 3 11 11 O 1.42100 * 106.40218 * 279.42800 * 9 8 3 12 12 N 1.65601 * 107.21716 * 165.88921 * 9 8 3 13 13 C 1.36941 * 119.99531 * 265.83210 * 12 9 8 14 14 H 1.07992 * 120.00533 * 6.71431 * 13 12 9 15 15 C 1.38814 * 119.99761 * 186.71845 * 13 12 9 16 16 N 1.31619 * 119.99859 * 8.87475 * 15 13 12 17 17 Si 1.86796 * 120.00077 * 188.87271 * 15 13 12 18 18 H 1.48501 * 109.47187 * 90.00062 * 17 15 13 19 19 H 1.48506 * 109.47345 * 209.99989 * 17 15 13 20 20 H 1.48503 * 109.47214 * 330.00016 * 17 15 13 21 21 C 1.46500 * 120.00351 * 86.10790 * 12 9 8 22 22 C 1.52998 * 109.47050 * 93.25946 * 21 12 9 23 23 H 1.09000 * 109.46975 * 65.15620 * 1 2 3 24 24 H 1.08995 * 109.46870 * 185.15807 * 1 2 3 25 25 H 1.08999 * 109.46915 * 305.16116 * 1 2 3 26 26 H 1.08998 * 109.47170 * 239.99947 * 2 1 3 27 27 H 1.08997 * 109.46913 * 119.99779 * 2 1 3 28 28 H 1.08002 * 119.99740 * 0.04410 * 4 3 2 29 29 H 1.08000 * 120.00405 * 179.76711 * 5 4 3 30 30 H 1.08002 * 120.00537 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.00120 * 179.97438 * 7 6 5 32 32 H 0.97008 * 119.99798 * 180.02562 * 16 15 13 33 33 H 1.08995 * 109.46913 * 213.26046 * 21 12 9 34 34 H 1.09005 * 109.46728 * 333.26546 * 21 12 9 35 35 H 1.09001 * 109.47179 * 179.97438 * 22 21 12 36 36 H 1.09003 * 109.47542 * 300.00451 * 22 21 12 37 37 H 1.09005 * 109.46866 * 60.00684 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4251 2.0153 -1.1849 5 6 2.8911 3.3164 -1.1841 6 6 2.9596 4.0254 0.0009 7 6 2.5616 3.4331 1.1846 8 6 2.0955 2.1315 1.1838 9 16 1.5883 1.3764 2.6927 10 8 2.2965 0.1480 2.7847 11 8 0.1701 1.4604 2.7265 12 7 2.1426 2.3294 3.9284 13 6 3.3432 2.0483 4.5241 14 1 3.9787 1.2744 4.1196 15 6 3.7435 2.7581 5.6479 16 7 2.9016 3.5753 6.2444 17 14 5.4767 2.5533 6.3136 18 1 6.3741 3.5474 5.6720 19 1 5.4711 2.7675 7.7832 20 1 5.9629 1.1823 6.0151 21 6 1.3459 3.4696 4.3883 22 6 0.4608 3.0346 5.5579 23 1 -0.3633 0.4318 -0.9326 24 1 -0.3633 -1.0235 0.0924 25 1 -0.3633 0.5918 0.8402 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.3712 1.4616 -2.1106 29 1 3.2014 3.7795 -2.1091 30 1 3.3234 5.0423 0.0016 31 1 2.6156 3.9868 2.1103 32 1 3.1814 4.0716 7.0295 33 1 2.0108 4.2697 4.7137 34 1 0.7189 3.8276 3.5716 35 1 -0.1317 3.8830 5.9004 36 1 -0.2040 2.2344 5.2325 37 1 1.0878 2.6766 6.3745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274996065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:13 Heat of formation + Delta-G solvation = -48.118658 kcal Electronic energy + Delta-G solvation = -21470.631473 eV Core-core repulsion = 18340.078796 eV Total energy + Delta-G solvation = -3130.552677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35462 -38.13721 -37.94892 -36.86420 -35.11534 -33.17246 -32.13352 -31.08247 -30.37947 -26.33379 -25.04455 -24.09602 -23.46700 -22.18505 -20.39581 -19.27684 -18.32734 -18.25537 -16.80173 -16.65646 -16.56634 -15.91015 -15.54336 -15.24624 -14.99778 -14.74300 -14.43769 -14.22632 -14.02020 -13.51548 -13.39128 -13.16879 -13.04036 -12.99402 -12.90525 -12.78304 -12.57813 -12.51884 -12.04040 -12.01150 -11.88214 -11.75321 -11.64072 -11.28912 -10.86050 -10.24965 -9.82405 -9.77535 -7.93863 -5.76177 -0.29593 -0.06853 0.34485 1.48844 1.50954 1.60621 2.23156 2.55503 2.62144 2.84462 3.19375 3.60676 3.76432 3.89018 4.03094 4.21330 4.27335 4.34471 4.41311 4.47526 4.56274 4.78561 4.84140 4.87776 4.96337 5.01506 5.06404 5.12492 5.23291 5.29442 5.36571 5.40538 5.41434 5.57200 5.93917 5.96634 6.08645 6.66414 7.06475 7.44128 8.93421 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.007301 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.066891 B = 3834.037038 C = 4227.493100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.142 4.142 3 C -0.007 4.007 4 C -0.140 4.140 5 C -0.065 4.065 6 C -0.148 4.148 7 C -0.044 4.044 8 C -0.686 4.686 9 S 2.674 3.326 10 O -0.999 6.999 11 O -0.995 6.995 12 N -0.866 5.866 13 C -0.330 4.330 14 H 0.093 0.907 15 C -0.002 4.002 16 N -0.894 5.894 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.143 3.857 22 C -0.138 4.138 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.128 0.872 32 H 0.263 0.737 33 H 0.109 0.891 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 1.833 -13.349 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.179 4.179 3 C -0.008 4.008 4 C -0.159 4.159 5 C -0.082 4.082 6 C -0.167 4.167 7 C -0.063 4.063 8 C -0.773 4.773 9 S 2.769 3.231 10 O -0.990 6.990 11 O -0.985 6.985 12 N -0.700 5.700 13 C -0.459 4.459 14 H 0.111 0.889 15 C -0.203 4.203 16 N -0.537 5.537 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.202 1.202 21 C 0.018 3.982 22 C -0.197 4.197 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.139 0.861 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.658 1.174 -13.124 13.193 hybrid contribution 0.985 0.345 0.502 1.158 sum 0.327 1.519 -12.622 12.717 Atomic orbital electron populations 1.22080 0.93413 1.03692 1.03626 1.21343 0.97794 0.92581 1.06221 1.19768 0.93299 0.95404 0.92353 1.21538 1.00389 0.96471 0.97485 1.21868 0.93619 0.93609 0.99126 1.21629 1.01141 1.01802 0.92110 1.21130 0.92721 0.92136 1.00330 1.30988 1.18622 1.07564 1.20170 1.02065 0.73173 0.73999 0.73909 1.93396 1.74770 1.43698 1.87130 1.93456 1.30086 1.87377 1.87580 1.52950 1.30090 1.43261 1.43671 1.19414 0.95557 1.20054 1.10923 0.88949 1.25682 1.01623 0.96902 0.96069 1.70274 1.33441 1.29219 1.20720 0.85225 0.79061 0.78378 0.77417 1.19664 1.20637 1.20184 1.21286 0.92661 0.90140 0.94091 1.22162 0.97788 0.99157 1.00610 0.89820 0.90172 0.93356 0.86135 0.90768 0.81843 0.81125 0.82560 0.85417 0.92628 0.87375 0.94481 0.92607 0.96858 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 9.83 71.98 0.71 -4.42 16 2 C -0.14 -4.50 5.48 29.85 0.16 -4.34 16 3 C -0.01 -0.22 5.13 -19.86 -0.10 -0.33 16 4 C -0.14 -3.52 9.67 22.27 0.22 -3.31 16 5 C -0.06 -1.44 10.05 22.27 0.22 -1.21 16 6 C -0.15 -4.00 10.05 22.27 0.22 -3.77 16 7 C -0.04 -1.59 9.57 22.27 0.21 -1.38 16 8 C -0.69 -27.49 5.83 22.27 0.13 -27.36 16 9 S 2.67 127.84 4.50 -56.49 -0.25 127.58 16 10 O -1.00 -52.12 14.44 -128.00 -1.85 -53.97 16 11 O -0.99 -49.22 14.65 -128.00 -1.88 -51.10 16 12 N -0.87 -43.66 2.10 -343.45 -0.72 -44.38 16 13 C -0.33 -17.64 9.51 84.03 0.80 -16.84 16 14 H 0.09 5.06 7.19 -2.91 -0.02 5.04 16 15 C 0.00 -0.11 5.31 84.86 0.45 0.34 16 16 N -0.89 -45.57 7.37 21.65 0.16 -45.41 16 17 Si 0.97 41.54 29.56 68.60 2.03 43.57 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 C 0.14 6.81 4.42 86.38 0.38 7.19 16 22 C -0.14 -6.53 9.54 71.98 0.69 -5.85 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.78 5.51 -2.39 -0.01 1.76 16 26 H 0.12 2.79 8.02 -2.39 -0.02 2.77 16 27 H 0.07 2.82 5.42 -2.39 -0.01 2.81 16 28 H 0.16 2.76 8.05 -2.91 -0.02 2.74 16 29 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.13 4.79 6.56 -2.91 -0.02 4.77 16 32 H 0.26 12.75 8.31 -92.70 -0.77 11.98 16 33 H 0.11 5.29 5.81 -2.39 -0.01 5.28 16 34 H 0.04 1.60 7.78 -2.38 -0.02 1.59 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.01 0.60 7.84 -2.39 -0.02 0.58 16 37 H 0.07 3.75 6.08 -2.38 -0.01 3.74 16 Total: -1.00 -65.55 305.45 2.65 -62.90 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.07 Total: 22.08 kcal Atomic # 6 Polarization: -65.37 SS G_CDS: 4.09 Total: -61.27 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -0.56 Total: -89.79 kcal Atomic # 8 Polarization: -101.34 SS G_CDS: -3.72 Total: -105.06 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 127.84 SS G_CDS: -0.25 Total: 127.58 kcal Total: -65.55 2.65 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274996065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.776 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds