Wall clock time and date at job start Tue Mar 31 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99722 * 2 1 4 4 N 1.46503 * 109.47185 * 124.99793 * 3 2 1 5 5 C 1.46498 * 119.99917 * 274.73442 * 4 3 2 6 6 C 1.50706 * 109.46932 * 270.00068 * 5 4 3 7 7 H 1.07997 * 120.00231 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99819 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00266 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00188 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47299 * 90.00006 * 10 8 6 12 12 H 1.48496 * 109.47367 * 210.00089 * 10 8 6 13 13 H 1.48503 * 109.46674 * 330.00098 * 10 8 6 14 14 C 1.34773 * 119.99856 * 94.73432 * 4 3 2 15 15 O 1.21718 * 120.00321 * 354.95631 * 14 4 3 16 16 C 1.46509 * 119.99649 * 175.23730 * 14 4 3 17 17 C 1.33616 * 119.61845 * 88.88008 * 16 14 4 18 18 C 1.50700 * 116.99571 * 1.35185 * 17 16 14 19 19 O 1.33557 * 126.01490 * 181.04535 * 17 16 14 20 20 C 1.42315 * 121.48607 * 339.04153 * 19 17 16 21 21 C 1.53751 * 109.04859 * 56.15361 * 20 19 17 22 22 S 1.76550 * 119.61042 * 269.15190 * 16 14 4 23 23 H 1.07998 * 120.00086 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99674 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00414 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47147 * 4.99399 * 3 2 1 27 27 H 1.08997 * 109.46993 * 244.99694 * 3 2 1 28 28 H 1.09002 * 109.47465 * 29.99535 * 5 4 3 29 29 H 1.08997 * 109.47750 * 150.00254 * 5 4 3 30 30 H 0.97004 * 119.99761 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47790 * 84.87667 * 18 17 16 32 32 H 1.09001 * 109.46907 * 204.87619 * 18 17 16 33 33 H 1.09003 * 109.47033 * 324.87221 * 18 17 16 34 34 H 1.09005 * 109.54430 * 296.27562 * 20 19 17 35 35 H 1.09007 * 109.53742 * 176.02667 * 20 19 17 36 36 H 1.09004 * 109.90312 * 175.25732 * 21 20 19 37 37 H 1.09006 * 109.90104 * 54.12514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.5298 1.7678 2.4510 6 6 2.7205 3.2568 2.5840 7 1 3.1452 3.8219 1.7675 8 6 2.3528 3.8976 3.7480 9 7 1.8360 3.2094 4.7426 10 14 2.5898 5.7432 3.9133 11 1 1.3706 6.4436 3.4357 12 1 2.8314 6.0857 5.3378 13 1 3.7559 6.1674 3.0975 14 6 4.2763 0.9559 0.9584 15 8 4.6397 0.5072 -0.1131 16 6 5.2317 1.0813 2.0621 17 6 5.3787 0.0727 2.9260 18 6 4.5537 -1.1642 2.6804 19 8 6.1936 0.0575 3.9841 20 6 7.3126 0.9323 4.0731 21 6 6.8275 2.3840 3.9271 22 16 6.1700 2.5663 2.2390 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5399 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4027 -0.9313 28 1 1.4730 1.5255 2.5629 29 1 3.1034 1.2576 3.2247 30 1 1.5776 3.6603 5.5617 31 1 5.0688 -1.8092 1.9685 32 1 4.4127 -1.6994 3.6194 33 1 3.5827 -0.8789 2.2755 34 1 8.0197 0.7021 3.2761 35 1 7.7982 0.8057 5.0407 36 1 7.6608 3.0705 4.0769 37 1 6.0422 2.5878 4.6551 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293728185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:36 Heat of formation + Delta-G solvation = -29.454055 kcal Electronic energy + Delta-G solvation = -21122.196923 eV Core-core repulsion = 17992.453604 eV Total energy + Delta-G solvation = -3129.743319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87713 -38.82398 -35.44300 -33.71589 -32.92981 -32.00620 -31.00852 -27.79410 -27.39354 -25.49353 -24.05553 -22.89741 -20.77908 -19.60373 -18.51793 -17.46530 -16.78259 -16.36969 -16.06113 -15.58393 -15.25853 -14.54993 -14.41811 -14.09298 -13.80100 -13.34574 -12.88022 -12.87714 -12.53666 -12.29235 -12.06669 -11.90674 -11.70524 -11.46313 -11.38764 -11.04018 -10.94021 -10.81466 -10.71732 -10.20540 -9.72695 -9.70438 -9.39433 -9.06443 -8.79687 -8.47054 -7.75102 -6.73456 -6.08822 -4.11888 1.74629 2.19848 2.58159 2.76261 3.26354 3.26785 3.33719 3.39624 3.56319 4.13325 4.42234 4.63694 5.08625 5.18826 5.25127 5.28380 5.36219 5.44584 5.56021 5.60086 5.76781 5.80684 5.90086 5.98683 6.04441 6.18880 6.33998 6.39411 6.74431 6.92431 7.06578 7.25101 7.56192 7.71980 7.85945 8.15117 8.28693 8.84194 8.99040 9.52677 10.98788 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.010618 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.608238 B = 2636.471337 C = 4321.121458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.142 3.858 4 N -0.580 5.580 5 C 0.239 3.761 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.896 5.896 10 Si 0.889 3.111 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.270 1.270 14 C 0.591 3.409 15 O -0.564 6.564 16 C -0.238 4.238 17 C 0.114 3.886 18 C -0.106 4.106 19 O -0.308 6.308 20 C 0.064 3.936 21 C -0.156 4.156 22 S -0.075 6.075 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -5.607 -1.264 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.310 5.310 5 C 0.119 3.881 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.536 5.536 10 Si 0.716 3.284 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.194 1.194 14 C 0.377 3.623 15 O -0.445 6.445 16 C -0.354 4.354 17 C 0.056 3.944 18 C -0.164 4.164 19 O -0.221 6.221 20 C -0.014 4.014 21 C -0.304 4.304 22 S 0.166 5.834 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.152 -4.911 -2.231 8.182 hybrid contribution -0.186 0.448 1.215 1.309 sum 5.967 -4.463 -1.016 7.520 Atomic orbital electron populations 1.23775 0.95759 1.01594 1.01623 1.23353 0.96062 0.99195 0.98942 1.20472 0.92273 0.94929 0.90380 1.48210 1.07833 1.62444 1.12493 1.19453 0.95782 0.95533 0.77298 1.21405 1.41064 0.92313 1.00743 0.91956 1.24847 0.95096 0.98159 0.95565 1.69939 1.42725 1.35710 1.05187 0.86624 0.78803 0.85697 0.77228 1.20710 1.21315 1.19449 1.17116 0.81811 0.77201 0.86128 1.90725 1.79218 1.47377 1.27199 1.22367 1.09659 0.98053 1.05339 1.20225 0.92081 0.94936 0.87170 1.20923 0.98937 0.93651 1.02882 1.85052 1.38034 1.59420 1.39579 1.23059 0.86376 0.87883 1.04036 1.24426 1.05488 1.00627 0.99898 1.85503 1.57172 1.25531 1.15220 0.88405 0.88868 0.87802 0.89752 0.89953 0.94619 0.94413 0.92839 0.90108 0.90327 0.89674 0.90868 0.86465 0.86218 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.32 29.01 0.42 -2.32 16 2 C -0.16 -2.57 9.84 -36.02 -0.35 -2.93 16 3 C 0.14 2.69 5.86 -5.19 -0.03 2.66 16 4 N -0.58 -12.59 2.18 -178.04 -0.39 -12.98 16 5 C 0.24 5.79 4.77 -5.19 -0.02 5.76 16 6 C -0.52 -13.54 9.38 -34.44 -0.32 -13.87 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -24.96 13.29 55.43 0.74 -24.23 16 10 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.59 13.09 5.14 -12.93 -0.07 13.02 16 15 O -0.56 -13.32 16.67 5.17 0.09 -13.24 16 16 C -0.24 -4.96 4.39 -37.87 -0.17 -5.12 16 17 C 0.11 2.14 5.92 -35.93 -0.21 1.93 16 18 C -0.11 -1.73 9.39 36.01 0.34 -1.39 16 19 O -0.31 -5.17 9.88 -12.81 -0.13 -5.30 16 20 C 0.06 0.84 6.92 37.55 0.26 1.10 16 21 C -0.16 -2.35 6.78 37.55 0.25 -2.10 16 22 S -0.07 -1.47 22.32 -107.50 -2.40 -3.87 16 23 H 0.10 1.38 7.84 -52.49 -0.41 0.96 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.08 1.57 7.76 -51.93 -0.40 1.17 16 27 H 0.08 1.56 7.35 -51.93 -0.38 1.18 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 0.97 6.32 -51.93 -0.33 0.64 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.52 6.41 -51.93 -0.33 1.18 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -30.81 328.19 -7.38 -38.18 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.20 Total: 2.17 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.01 Total: -1.61 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.35 Total: -37.21 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.40 Total: -3.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.81 -7.38 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293728185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.728 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds