Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 C 1.50706 * 109.46929 * 239.99591 * 2 1 3 5 5 H 1.07994 * 119.99922 * 239.99989 * 4 2 1 6 6 C 1.37875 * 119.99576 * 60.00020 * 4 2 1 7 7 N 1.31513 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47142 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46957 * 120.00309 * 8 6 4 11 11 H 1.48495 * 109.47229 * 240.00260 * 8 6 4 12 12 C 1.53008 * 109.47039 * 120.00157 * 2 1 3 13 13 N 1.46501 * 109.46803 * 299.99474 * 12 2 1 14 14 S 1.65601 * 119.99590 * 164.99984 * 13 12 2 15 15 O 1.42098 * 106.40290 * 311.46059 * 14 13 12 16 16 O 1.42107 * 106.39817 * 178.54092 * 14 13 12 17 17 C 1.76199 * 107.21620 * 65.00305 * 14 13 12 18 18 C 1.38237 * 119.99920 * 90.00183 * 17 14 13 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00031 * 269.97364 * 17 14 13 23 23 H 1.09005 * 109.46913 * 300.00239 * 1 2 3 24 24 H 1.08997 * 109.46834 * 60.00105 * 1 2 3 25 25 H 1.08999 * 109.47434 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46789 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47104 * 299.99729 * 3 2 1 28 28 H 1.08997 * 109.47022 * 60.00029 * 3 2 1 29 29 H 0.97004 * 119.99890 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46753 * 179.97438 * 12 2 1 31 31 H 1.08994 * 109.47121 * 59.99731 * 12 2 1 32 32 H 0.97000 * 120.00223 * 345.00906 * 13 12 2 33 33 H 1.08005 * 120.00088 * 359.96860 * 18 17 14 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99990 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6038 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1861 -4.8161 12 6 2.0400 -0.7213 1.2493 13 7 1.5518 -0.0306 2.4454 14 16 1.6257 -0.7781 3.9213 15 8 1.0839 -2.0792 3.7397 16 8 1.1156 0.1511 4.8677 17 6 3.3302 -0.9987 4.3094 18 6 4.0140 -0.0170 5.0019 19 6 5.3514 -0.1898 5.3059 20 6 6.0047 -1.3447 4.9183 21 6 5.3222 -2.3243 4.2215 22 6 3.9835 -2.1536 3.9218 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7088 1.1612 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -1.7489 1.2493 32 1 1.1851 0.8645 2.3729 33 1 3.5036 0.8854 5.3047 34 1 5.8858 0.5773 5.8466 35 1 7.0495 -1.4799 5.1562 36 1 5.8337 -3.2247 3.9149 37 1 3.4493 -2.9206 3.3807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316075318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -55.688257 kcal Electronic energy + Delta-G solvation = -20586.087747 eV Core-core repulsion = 17455.206827 eV Total energy + Delta-G solvation = -3130.880919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.13002 -37.09935 -36.75152 -35.57981 -33.21833 -31.34986 -31.11011 -30.53150 -25.68906 -25.53989 -24.51794 -23.25039 -22.80386 -19.33111 -18.90048 -18.00267 -17.27019 -16.07276 -15.83868 -15.71559 -15.03313 -14.68291 -14.57438 -13.96389 -13.60915 -13.50053 -13.17958 -12.96318 -12.32081 -12.22200 -11.87266 -11.82679 -11.72131 -11.48436 -11.35213 -11.12185 -10.95491 -10.67911 -10.63362 -10.39383 -10.17469 -9.65739 -9.48758 -9.33262 -9.13163 -8.83574 -8.76115 -8.37486 -6.01649 -4.12397 0.59242 0.86014 1.20784 3.24755 3.26228 3.35168 3.38316 3.55662 4.02511 4.38358 4.47350 4.77147 4.84231 4.86698 5.21106 5.25024 5.38696 5.58564 5.79081 5.82197 6.02364 6.11067 6.19228 6.22982 6.45442 6.49946 6.73608 6.77074 6.91813 7.01234 7.07127 7.35579 7.52733 7.59885 7.70451 8.04172 8.15697 8.39682 8.88080 9.53409 10.99529 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.005217 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.866939 B = 5365.397155 C = 5989.435095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.128 3.872 13 N -1.105 6.105 14 S 2.691 3.309 15 O -0.960 6.960 16 O -0.972 6.972 17 C -0.671 4.671 18 C -0.020 4.020 19 C -0.145 4.145 20 C -0.070 4.070 21 C -0.142 4.142 22 C -0.018 4.018 23 H 0.010 0.990 24 H 0.084 0.916 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.009 0.991 29 H 0.259 0.741 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.417 0.583 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.809 -1.731 12.654 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.003 3.997 13 N -0.869 5.869 14 S 2.780 3.220 15 O -0.950 6.950 16 O -0.962 6.962 17 C -0.757 4.757 18 C -0.039 4.039 19 C -0.164 4.164 20 C -0.088 4.088 21 C -0.161 4.161 22 C -0.037 4.037 23 H 0.029 0.971 24 H 0.102 0.898 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.254 0.746 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.115 -2.065 13.041 14.999 hybrid contribution 1.099 -0.009 -1.034 1.509 sum 8.215 -2.074 12.007 14.695 Atomic orbital electron populations 1.21820 0.97553 0.99366 1.00248 1.18272 0.93020 0.92610 0.89984 1.21833 0.98421 0.98472 1.00229 1.21043 1.31521 1.12091 0.89969 0.92398 1.24885 0.94877 0.94916 0.98839 1.69823 1.36605 1.22721 1.23098 0.86540 0.78637 0.79680 0.83122 1.19824 1.21051 1.21136 1.21670 0.97218 0.96069 0.84779 1.55442 1.78032 1.30657 1.22736 1.01880 0.73727 0.73720 0.72697 1.93572 1.75762 1.39904 1.85775 1.93550 1.78164 1.63701 1.60834 1.31156 1.27653 1.03098 1.13771 1.20941 0.94340 0.96749 0.91915 1.21275 0.94881 0.98351 1.01846 1.21455 0.99777 0.93176 0.94374 1.21308 0.94708 0.99980 1.00093 1.21027 0.94632 0.94701 0.93359 0.97087 0.89759 0.95322 0.95478 0.89594 0.97248 0.93056 0.93118 0.91435 0.74600 0.84351 0.85246 0.85470 0.85101 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 2 C 0.06 1.43 0.51 -155.65 -0.08 1.35 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.40 9.35 55.43 0.52 -22.88 16 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.47 5.05 -4.04 -0.02 2.45 16 13 N -1.11 -18.68 5.33 -10.61 -0.06 -18.74 16 14 S 2.69 43.41 5.74 -107.50 -0.62 42.79 16 15 O -0.96 -17.92 16.75 -57.17 -0.96 -18.88 16 16 O -0.97 -17.07 17.28 -57.17 -0.99 -18.06 16 17 C -0.67 -9.51 5.95 -39.58 -0.24 -9.75 16 18 C -0.02 -0.26 9.52 -39.58 -0.38 -0.63 16 19 C -0.14 -1.53 10.05 -39.58 -0.40 -1.93 16 20 C -0.07 -0.69 10.05 -39.58 -0.40 -1.09 16 21 C -0.14 -1.57 10.05 -39.58 -0.40 -1.97 16 22 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 23 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 32 H 0.42 6.75 6.47 -34.47 -0.22 6.53 16 33 H 0.14 1.57 7.62 -52.48 -0.40 1.17 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -30.27 315.38 -9.27 -39.54 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.85 Total: 5.24 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -2.05 Total: -29.08 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.46 Total: -41.62 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.95 Total: -36.94 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 43.41 SS G_CDS: -0.62 Total: 42.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.27 -9.27 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316075318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.146 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds