Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 C 1.50706 * 109.46929 * 239.99591 * 2 1 3 5 5 H 1.07994 * 119.99922 * 239.99989 * 4 2 1 6 6 C 1.37875 * 119.99576 * 60.00020 * 4 2 1 7 7 N 1.31513 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47142 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46957 * 120.00309 * 8 6 4 11 11 H 1.48495 * 109.47229 * 240.00260 * 8 6 4 12 12 C 1.53008 * 109.47039 * 120.00157 * 2 1 3 13 13 N 1.46501 * 109.46803 * 299.99474 * 12 2 1 14 14 S 1.65601 * 119.99590 * 164.99984 * 13 12 2 15 15 O 1.42098 * 106.40290 * 311.46059 * 14 13 12 16 16 O 1.42107 * 106.39817 * 178.54092 * 14 13 12 17 17 C 1.76199 * 107.21620 * 65.00305 * 14 13 12 18 18 C 1.38237 * 119.99920 * 90.00183 * 17 14 13 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00031 * 269.97364 * 17 14 13 23 23 H 1.09005 * 109.46913 * 300.00239 * 1 2 3 24 24 H 1.08997 * 109.46834 * 60.00105 * 1 2 3 25 25 H 1.08999 * 109.47434 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46789 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47104 * 299.99729 * 3 2 1 28 28 H 1.08997 * 109.47022 * 60.00029 * 3 2 1 29 29 H 0.97004 * 119.99890 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46753 * 179.97438 * 12 2 1 31 31 H 1.08994 * 109.47121 * 59.99731 * 12 2 1 32 32 H 0.97000 * 120.00223 * 345.00906 * 13 12 2 33 33 H 1.08005 * 120.00088 * 359.96860 * 18 17 14 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99990 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2866 -3.6038 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1861 -4.8161 12 6 2.0400 -0.7213 1.2493 13 7 1.5518 -0.0306 2.4454 14 16 1.6257 -0.7781 3.9213 15 8 1.0839 -2.0792 3.7397 16 8 1.1156 0.1511 4.8677 17 6 3.3302 -0.9987 4.3094 18 6 4.0140 -0.0170 5.0019 19 6 5.3514 -0.1898 5.3059 20 6 6.0047 -1.3447 4.9183 21 6 5.3222 -2.3243 4.2215 22 6 3.9835 -2.1536 3.9218 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7088 1.1612 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -1.7489 1.2493 32 1 1.1851 0.8645 2.3729 33 1 3.5036 0.8854 5.3047 34 1 5.8858 0.5773 5.8466 35 1 7.0495 -1.4799 5.1562 36 1 5.8337 -3.2247 3.9149 37 1 3.4493 -2.9206 3.3807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316075318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -75.181759 kcal Electronic energy + Delta-G solvation = -20586.933048 eV Core-core repulsion = 17455.206827 eV Total energy + Delta-G solvation = -3131.726221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00066 -38.67037 -38.23680 -36.95444 -34.92566 -32.35979 -32.20966 -31.97435 -27.50918 -27.38450 -26.24113 -24.18576 -23.67838 -20.77453 -20.47640 -19.15367 -18.62400 -17.63363 -17.15109 -16.97217 -16.58066 -15.97095 -15.56561 -15.34467 -15.07068 -14.87199 -14.46302 -14.05160 -13.96041 -13.39679 -13.29503 -13.25051 -13.20177 -13.13420 -12.90965 -12.73929 -12.46390 -12.25984 -12.19467 -12.06905 -11.74655 -11.44579 -11.10156 -10.64716 -10.42644 -10.36186 -10.20881 -10.00250 -7.97081 -6.13191 -0.59845 -0.14602 0.33853 1.44427 1.48883 1.57321 2.05940 2.49081 2.54332 2.82316 3.26857 3.33981 3.88100 3.97985 4.12718 4.25213 4.41899 4.46383 4.57956 4.73192 4.77331 4.82148 4.98817 5.10081 5.12226 5.14074 5.25834 5.27444 5.29878 5.40187 5.53571 5.72214 5.72711 5.90624 6.10451 6.20207 6.29730 6.48345 6.93789 7.54640 9.02024 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.005217 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.866939 B = 5365.397155 C = 5989.435095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.053 3.947 3 C -0.124 4.124 4 C -0.523 4.523 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.284 1.284 12 C 0.140 3.860 13 N -1.106 6.106 14 S 2.706 3.294 15 O -0.992 6.992 16 O -0.989 6.989 17 C -0.682 4.682 18 C -0.037 4.037 19 C -0.144 4.144 20 C -0.062 4.062 21 C -0.145 4.145 22 C -0.041 4.041 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.019 0.981 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.258 0.742 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.420 0.580 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 -1.904 13.783 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 C -0.181 4.181 4 C -0.561 4.561 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.772 3.228 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.210 1.210 12 C 0.014 3.986 13 N -0.868 5.868 14 S 2.799 3.201 15 O -0.982 6.982 16 O -0.979 6.979 17 C -0.772 4.772 18 C -0.057 4.057 19 C -0.162 4.162 20 C -0.080 4.080 21 C -0.164 4.164 22 C -0.061 4.061 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.257 0.743 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.372 -2.232 14.164 17.130 hybrid contribution 0.467 0.040 -1.306 1.388 sum 9.839 -2.191 12.858 16.338 Atomic orbital electron populations 1.21719 0.98077 0.98631 0.99977 1.18320 0.92678 0.93165 0.90751 1.21688 0.98356 0.98010 1.00092 1.21382 1.31365 1.12145 0.91249 0.92675 1.25510 0.95268 0.95597 1.01178 1.69952 1.37351 1.23609 1.23327 0.85706 0.77980 0.78820 0.80269 1.19336 1.21318 1.21005 1.21358 0.97719 0.95352 0.84166 1.55311 1.78455 1.30573 1.22456 1.01110 0.74444 0.72585 0.71937 1.93525 1.77448 1.41173 1.86029 1.93520 1.79367 1.64082 1.60947 1.30661 1.25878 1.04610 1.16044 1.21202 0.95622 0.96706 0.92143 1.21700 0.94001 0.99377 1.01160 1.21956 1.01448 0.92110 0.92493 1.21677 0.93762 1.01326 0.99612 1.21190 0.96024 0.94535 0.94322 0.95091 0.92205 0.96219 0.95375 0.92329 0.94739 0.93289 0.92000 0.92150 0.74278 0.83742 0.82116 0.81721 0.82572 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.08 71.98 0.58 -5.27 16 2 C 0.05 2.39 0.51 -52.92 -0.03 2.36 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.52 -26.60 8.01 25.60 0.21 -26.39 16 5 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 6 C 0.02 1.23 5.15 84.65 0.44 1.67 16 7 N -0.90 -48.42 9.35 21.45 0.20 -48.22 16 8 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.14 5.35 5.05 86.38 0.44 5.79 16 13 N -1.11 -36.84 5.33 -187.48 -1.00 -37.84 16 14 S 2.71 86.97 5.74 -56.49 -0.32 86.65 16 15 O -0.99 -37.53 16.75 -128.00 -2.14 -39.67 16 16 O -0.99 -34.46 17.28 -128.00 -2.21 -36.67 16 17 C -0.68 -18.64 5.95 22.27 0.13 -18.51 16 18 C -0.04 -0.87 9.52 22.27 0.21 -0.66 16 19 C -0.14 -2.53 10.05 22.27 0.22 -2.30 16 20 C -0.06 -0.98 10.05 22.27 0.22 -0.76 16 21 C -0.15 -2.78 10.05 22.27 0.22 -2.55 16 22 C -0.04 -1.04 9.52 22.27 0.21 -0.83 16 23 H 0.03 1.26 7.20 -2.38 -0.02 1.24 16 24 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 27 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 28 H 0.03 1.29 6.60 -2.39 -0.02 1.27 16 29 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.38 7.75 -2.39 -0.02 2.36 16 32 H 0.42 13.27 6.47 -96.74 -0.63 12.64 16 33 H 0.14 3.06 7.62 -2.91 -0.02 3.04 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.14 3.45 7.62 -2.91 -0.02 3.43 16 Total: -1.00 -64.64 315.38 0.44 -64.21 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.45 Total: 20.06 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.44 Total: -52.29 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -0.80 Total: -86.06 kcal Atomic # 8 Polarization: -71.99 SS G_CDS: -4.36 Total: -76.34 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 86.97 SS G_CDS: -0.32 Total: 86.65 kcal Total: -64.64 0.44 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316075318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.973 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds