Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47133 * 2 1 4 4 C 1.33853 * 124.51126 * 89.99752 * 3 2 1 5 5 C 1.37444 * 115.10601 * 179.97438 * 4 3 2 6 6 C 1.36765 * 113.27692 * 359.97438 * 5 4 3 7 7 C 1.46456 * 125.45822 * 179.97438 * 6 5 4 8 8 O 1.21739 * 120.00381 * 3.50542 * 7 6 5 9 9 N 1.34775 * 119.99749 * 183.50892 * 7 6 5 10 10 C 1.36892 * 120.00253 * 5.66217 * 9 7 6 11 11 H 1.08000 * 119.99890 * 47.49439 * 10 9 7 12 12 C 1.39004 * 119.99767 * 227.49736 * 10 9 7 13 13 N 1.31397 * 120.00297 * 359.97349 * 12 10 9 14 14 Si 1.86807 * 119.99829 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46804 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46697 * 120.00132 * 14 12 10 17 17 H 1.48503 * 109.46925 * 240.00087 * 14 12 10 18 18 C 1.46507 * 119.99929 * 185.66323 * 9 7 6 19 19 C 1.52999 * 109.46715 * 265.21387 * 18 9 7 20 20 O 1.42900 * 109.47320 * 65.00268 * 19 18 9 21 21 C 1.42903 * 113.99836 * 179.97438 * 20 19 18 22 22 S 1.70607 * 124.51686 * 270.31308 * 3 2 1 23 23 H 1.09009 * 109.46869 * 60.00306 * 1 2 3 24 24 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47314 * 300.00316 * 1 2 3 26 26 H 1.09000 * 109.47073 * 240.00422 * 2 1 3 27 27 H 1.08999 * 109.47052 * 120.00230 * 2 1 3 28 28 H 1.08003 * 122.44326 * 359.97438 * 4 3 2 29 29 H 1.07996 * 123.35538 * 180.02562 * 5 4 3 30 30 H 0.96997 * 120.00176 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.47330 * 25.21299 * 18 9 7 32 32 H 1.09001 * 109.46785 * 145.21524 * 18 9 7 33 33 H 1.09003 * 109.46667 * 185.00392 * 19 18 9 34 34 H 1.09002 * 109.47189 * 304.99658 * 19 18 9 35 35 H 1.08997 * 109.47208 * 60.00023 * 21 20 19 36 36 H 1.08995 * 109.46756 * 179.97438 * 21 20 19 37 37 H 1.08997 * 109.46979 * 299.99641 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2851 2.1359 1.1030 5 6 2.7376 3.4141 0.8784 6 6 2.8479 3.7229 -0.4494 7 6 3.3021 5.0067 -0.9882 8 8 3.6799 5.8842 -0.2337 9 7 3.3018 5.2168 -2.3195 10 6 2.7698 4.2769 -3.1607 11 1 1.8021 3.8474 -2.9475 12 6 3.4752 3.8753 -4.2891 13 7 4.6524 4.3982 -4.5487 14 14 2.7496 2.5922 -5.4366 15 1 1.4227 2.1646 -4.9250 16 1 2.5923 3.1742 -6.7937 17 1 3.6567 1.4183 -5.5034 18 6 3.8708 6.4511 -2.8665 19 6 2.7571 7.4808 -3.0673 20 8 2.2115 7.8461 -1.7981 21 6 1.1583 8.8089 -1.8737 22 16 2.3474 2.3349 -1.4057 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.1438 1.7374 2.0968 29 1 2.9825 4.1052 1.6713 30 1 5.1448 4.1177 -5.3359 31 1 4.6119 6.8481 -2.1728 32 1 4.3464 6.2387 -3.8240 33 1 3.1645 8.3658 -3.5561 34 1 1.9726 7.0506 -3.6900 35 1 0.3405 8.4068 -2.4716 36 1 0.7979 9.0327 -0.8696 37 1 1.5329 9.7215 -2.3374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317116871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = -55.921287 kcal Electronic energy + Delta-G solvation = -20635.205109 eV Core-core repulsion = 17504.314085 eV Total energy + Delta-G solvation = -3130.891024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.65612 -37.26848 -36.67643 -34.76001 -33.16369 -31.77557 -29.64865 -27.66064 -25.78603 -25.23261 -24.29763 -22.13390 -21.54320 -19.87122 -18.60405 -17.16119 -16.42186 -15.75043 -15.36140 -15.10690 -14.69035 -14.40316 -14.34748 -13.88282 -13.72474 -13.34413 -13.15462 -12.52003 -12.26542 -11.99973 -11.77351 -11.52550 -11.36675 -11.28967 -11.24489 -11.01911 -11.00191 -10.71452 -10.69496 -10.39854 -10.20557 -9.81522 -9.07730 -8.97437 -8.52980 -7.77428 -7.61546 -7.42269 -6.54618 -4.43312 1.53743 2.58355 2.94886 3.09177 3.11497 3.13394 3.30118 3.90491 4.43345 4.56543 4.76427 4.93430 5.18227 5.31651 5.55138 5.68928 5.75858 5.84069 5.97592 5.99940 6.03519 6.07297 6.12790 6.18150 6.29981 6.34361 6.39952 6.43502 6.81246 6.88679 7.04614 7.15549 7.26989 7.35689 7.86215 7.92203 8.22446 8.85337 9.41741 9.88746 10.39807 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.007977 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.409976 B = 3509.213728 C = 4805.047429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C -0.287 4.287 4 C -0.156 4.156 5 C -0.102 4.102 6 C -0.217 4.217 7 C 0.549 3.451 8 O -0.577 6.577 9 N -0.439 5.439 10 C -0.332 4.332 11 H 0.098 0.902 12 C 0.060 3.940 13 N -0.850 5.850 14 Si 0.903 3.097 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.271 1.271 18 C 0.113 3.887 19 C 0.050 3.950 20 O -0.370 6.370 21 C 0.032 3.968 22 S 0.279 5.721 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.135 0.865 30 H 0.276 0.724 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 -3.592 0.886 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.406 4.406 4 C -0.187 4.187 5 C -0.135 4.135 6 C -0.339 4.339 7 C 0.338 3.662 8 O -0.462 6.462 9 N -0.158 5.158 10 C -0.467 4.467 11 H 0.114 0.886 12 C -0.149 4.149 13 N -0.485 5.485 14 Si 0.727 3.273 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.196 1.196 18 C -0.011 4.011 19 C -0.028 4.028 20 O -0.288 6.288 21 C -0.065 4.065 22 S 0.554 5.446 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.561 -3.598 -0.231 6.628 hybrid contribution -0.337 -0.138 0.750 0.834 sum -5.899 -3.736 0.519 7.002 Atomic orbital electron populations 1.21775 0.95128 1.01039 1.02367 1.19926 0.95537 0.90998 1.02001 1.25438 1.08689 1.02480 1.03947 1.19607 1.06313 0.94459 0.98291 1.20464 1.01520 0.96275 0.95274 1.24736 1.12030 1.00126 0.96978 1.17297 0.80610 0.85171 0.83169 1.90676 1.52481 1.44624 1.58376 1.43068 1.53160 1.16106 1.03472 1.19426 1.03134 1.18118 1.06004 0.88565 1.25645 0.94372 0.96610 0.98298 1.69598 1.11729 1.40128 1.27022 0.86185 0.80229 0.80789 0.80062 1.18010 1.19982 1.19608 1.21732 0.93508 0.82991 1.02868 1.23110 0.97453 0.96896 0.85296 1.88165 1.51237 1.60077 1.29330 1.22618 0.90661 0.91659 1.01556 1.84372 1.56885 1.00411 1.02931 0.92446 0.92834 0.92630 0.91534 0.91480 0.86495 0.84689 0.91277 0.91829 0.85353 0.94384 0.93395 0.94990 0.90629 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.44 16 2 C -0.05 -0.64 6.36 -27.88 -0.18 -0.82 16 3 C -0.29 -5.10 5.53 -35.85 -0.20 -5.30 16 4 C -0.16 -2.84 9.99 -41.41 -0.41 -3.26 16 5 C -0.10 -2.15 10.02 -40.40 -0.40 -2.56 16 6 C -0.22 -5.08 6.30 -36.81 -0.23 -5.31 16 7 C 0.55 14.40 7.35 -12.95 -0.10 14.30 16 8 O -0.58 -16.36 15.81 3.50 0.06 -16.30 16 9 N -0.44 -11.11 2.45 -116.37 -0.29 -11.40 16 10 C -0.33 -8.03 6.55 -15.01 -0.10 -8.13 16 11 H 0.10 2.29 5.84 -39.32 -0.23 2.06 16 12 C 0.06 1.42 5.36 -17.45 -0.09 1.32 16 13 N -0.85 -20.73 10.97 55.50 0.61 -20.12 16 14 Si 0.90 17.95 29.55 -169.99 -5.02 12.93 16 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 16 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 C 0.11 2.67 5.47 -4.04 -0.02 2.65 16 19 C 0.05 1.04 6.26 37.16 0.23 1.28 16 20 O -0.37 -8.16 9.82 -36.88 -0.36 -8.52 16 21 C 0.03 0.53 11.01 101.05 1.11 1.65 16 22 S 0.28 5.68 18.46 -107.50 -1.98 3.70 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 30 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 31 H 0.06 1.59 7.36 -51.93 -0.38 1.20 16 32 H 0.13 3.09 5.40 -51.93 -0.28 2.81 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -28.66 322.94 -7.25 -35.91 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.10 Total: 4.55 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.02 Total: -5.60 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.32 Total: -31.52 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.31 Total: -24.82 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.02 Total: 12.93 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.98 Total: 3.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.66 -7.25 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317116871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.016 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds