Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47384 * 64.99906 * 4 3 2 6 6 C 1.36880 * 120.00472 * 270.00416 * 5 4 3 7 7 H 1.08002 * 120.00358 * 130.27510 * 6 5 4 8 8 C 1.39008 * 119.99986 * 310.27276 * 6 5 4 9 9 N 1.31404 * 119.99684 * 353.54749 * 8 6 5 10 10 Si 1.86799 * 120.00296 * 173.55173 * 8 6 5 11 11 H 1.48500 * 109.47053 * 89.99566 * 10 8 6 12 12 H 1.48500 * 109.46921 * 209.99992 * 10 8 6 13 13 H 1.48499 * 109.46982 * 329.99967 * 10 8 6 14 14 C 1.34784 * 119.99611 * 89.99760 * 5 4 3 15 15 O 1.21736 * 119.99973 * 3.87124 * 14 5 4 16 16 C 1.46459 * 119.99832 * 183.86798 * 14 5 4 17 17 C 1.36766 * 125.46009 * 173.59028 * 16 14 5 18 18 C 1.37449 * 113.27519 * 179.73401 * 17 16 14 19 19 C 1.50702 * 122.44290 * 180.22029 * 18 17 16 20 20 C 1.33848 * 115.10894 * 0.24328 * 18 17 16 21 21 C 1.50702 * 124.51442 * 179.97438 * 20 18 17 22 22 S 1.70608 * 110.97113 * 0.02562 * 20 18 17 23 23 H 1.09002 * 109.46824 * 299.99660 * 1 2 3 24 24 H 1.09003 * 109.47315 * 59.99512 * 1 2 3 25 25 H 1.09005 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46535 * 60.00746 * 3 2 1 27 27 H 1.08994 * 109.47036 * 300.00379 * 3 2 1 28 28 H 1.09009 * 109.46909 * 305.00148 * 4 3 2 29 29 H 1.08994 * 109.47024 * 185.00703 * 4 3 2 30 30 H 0.97001 * 119.99903 * 185.00489 * 9 8 6 31 31 H 1.07998 * 123.36434 * 0.02562 * 17 16 14 32 32 H 1.09006 * 109.47022 * 90.02785 * 19 18 17 33 33 H 1.09003 * 109.47195 * 210.02544 * 19 18 17 34 34 H 1.09000 * 109.47124 * 330.02521 * 19 18 17 35 35 H 1.09007 * 109.46610 * 89.99915 * 21 20 18 36 36 H 1.08998 * 109.47399 * 210.00233 * 21 20 18 37 37 H 1.08999 * 109.47118 * 330.00754 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3369 7 1 3.6447 -1.3288 -2.1607 8 6 4.8014 -1.4932 -0.3621 9 7 5.4575 -0.8378 0.5689 10 14 4.8158 -3.3611 -0.3756 11 1 5.9590 -3.8414 -1.1926 12 1 4.9542 -3.8651 1.0144 13 1 3.5454 -3.8616 -0.9595 14 6 4.2615 1.3338 -2.3218 15 8 4.2220 2.5468 -2.2267 16 6 4.6196 0.7105 -3.5978 17 6 4.8085 1.3732 -4.7792 18 6 5.1440 0.5416 -5.8208 19 6 5.4038 1.0549 -7.2137 20 6 5.2227 -0.7574 -5.5078 21 6 5.5729 -1.8512 -6.4836 22 16 4.8724 -1.0101 -3.8573 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 6.0079 -1.3205 1.2053 31 1 4.7089 2.4437 -4.8822 32 1 6.4618 1.2938 -7.3215 33 1 5.1282 0.2901 -7.9400 34 1 4.8092 1.9518 -7.3872 35 1 6.6528 -1.9995 -6.4907 36 1 5.0810 -2.7765 -6.1841 37 1 5.2385 -1.5684 -7.4817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317178952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = -54.653967 kcal Electronic energy + Delta-G solvation = -20681.708122 eV Core-core repulsion = 17550.872053 eV Total energy + Delta-G solvation = -3130.836069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.78181 -37.60971 -36.84478 -34.72943 -31.78280 -31.56343 -29.48922 -28.91411 -26.00050 -25.31330 -24.74325 -22.92674 -21.29940 -19.41368 -18.17226 -17.17456 -16.47813 -15.68024 -15.59338 -15.02087 -14.60784 -14.34299 -14.26125 -14.02980 -13.60418 -13.21978 -12.92329 -12.53367 -12.42586 -12.05605 -11.95941 -11.73938 -11.31676 -11.29778 -11.20592 -11.18185 -10.98463 -10.86139 -10.82411 -10.42160 -10.20608 -9.71526 -9.05879 -8.97585 -8.64633 -7.78587 -7.47478 -7.37193 -6.50360 -4.32335 1.50743 2.58360 3.00809 3.13496 3.16564 3.20159 3.21333 3.99125 4.38270 4.48916 4.70717 4.95492 5.42182 5.59048 5.63780 5.65603 5.71790 5.78734 5.88751 5.95017 5.98623 6.00600 6.05089 6.12399 6.22371 6.27002 6.30259 6.44835 6.65920 6.84351 7.13438 7.15739 7.27940 7.32697 7.79672 7.96924 8.19173 8.91197 9.37151 9.80880 10.51107 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.007529 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.073067 B = 3718.293995 C = 4646.351987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.427 5.427 6 C -0.323 4.323 7 H 0.095 0.905 8 C 0.066 3.934 9 N -0.850 5.850 10 Si 0.906 3.094 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.260 1.260 14 C 0.542 3.458 15 O -0.599 6.599 16 C -0.218 4.218 17 C -0.097 4.097 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.295 4.295 21 C -0.072 4.072 22 S 0.285 5.715 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.275 0.725 31 H 0.135 0.865 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -2.597 -6.034 7.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.144 5.144 6 C -0.457 4.457 7 H 0.111 0.889 8 C -0.144 4.144 9 N -0.484 5.484 10 Si 0.731 3.269 11 H -0.194 1.194 12 H -0.203 1.203 13 H -0.184 1.184 14 C 0.332 3.668 15 O -0.487 6.487 16 C -0.339 4.339 17 C -0.131 4.131 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.413 4.413 21 C -0.131 4.131 22 S 0.561 5.439 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.028 -3.534 -4.871 6.737 hybrid contribution -0.119 0.688 -0.846 1.097 sum -3.147 -2.845 -5.717 7.119 Atomic orbital electron populations 1.22651 0.83410 1.01773 0.98831 1.88143 1.17371 1.27595 1.95031 1.23045 0.96419 0.84430 0.98665 1.21469 0.89239 0.99242 0.90545 1.43072 1.56300 1.05976 1.09046 1.19131 1.34517 0.81424 1.10600 0.88864 1.25530 0.93583 1.00357 0.94913 1.69742 1.25720 1.36975 1.15934 0.86211 0.79715 0.82559 0.78424 1.19381 1.20263 1.18432 1.17380 0.79788 0.86036 0.83636 1.90644 1.59074 1.13780 1.85166 1.24541 1.13551 0.97603 0.98184 1.20298 1.01948 1.00148 0.90665 1.18371 1.06875 0.92407 0.96631 1.20418 1.00960 1.00350 0.92902 1.25319 1.10601 0.98495 1.06901 1.20176 1.00953 0.95216 0.96713 1.84418 1.60025 1.04408 0.95088 0.95155 0.95006 0.90378 0.94080 0.94249 0.87165 0.90703 0.91404 0.84758 0.92323 0.92390 0.92407 0.91816 0.92138 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.60 10.18 -35.23 -0.36 -7.96 16 3 C 0.05 1.07 6.28 37.16 0.23 1.30 16 4 C 0.12 2.80 5.43 -4.05 -0.02 2.78 16 5 N -0.43 -10.82 2.42 -116.37 -0.28 -11.11 16 6 C -0.32 -8.00 6.36 -15.01 -0.10 -8.10 16 7 H 0.09 2.28 5.30 -31.22 -0.17 2.11 16 8 C 0.07 1.62 5.21 -17.45 -0.09 1.53 16 9 N -0.85 -21.73 11.49 55.50 0.64 -21.10 16 10 Si 0.91 18.94 29.56 -169.99 -5.03 13.92 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.54 14.04 7.59 -12.95 -0.10 13.94 16 15 O -0.60 -16.52 16.41 5.16 0.08 -16.44 16 16 C -0.22 -5.05 6.30 -36.81 -0.23 -5.28 16 17 C -0.10 -2.03 9.81 -40.40 -0.40 -2.43 16 18 C -0.13 -2.37 5.78 -106.45 -0.62 -2.99 16 19 C -0.09 -1.24 9.84 36.01 0.35 -0.88 16 20 C -0.30 -5.28 6.28 -35.85 -0.22 -5.50 16 21 C -0.07 -1.01 9.98 36.01 0.36 -0.65 16 22 S 0.29 5.84 18.29 -107.50 -1.97 3.87 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.11 2.74 5.90 -51.92 -0.31 2.44 16 29 H 0.07 1.78 7.37 -51.93 -0.38 1.40 16 30 H 0.28 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.13 2.73 8.06 -52.49 -0.42 2.30 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 34 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -29.12 320.85 -6.69 -35.81 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.90 Total: 2.84 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 0.28 Total: -4.68 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.36 Total: -32.20 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.27 Total: -24.39 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.97 Total: 3.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.12 -6.69 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317178952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.847 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds