Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47384 * 64.99906 * 4 3 2 6 6 C 1.36880 * 120.00472 * 270.00416 * 5 4 3 7 7 H 1.08002 * 120.00358 * 130.27510 * 6 5 4 8 8 C 1.39008 * 119.99986 * 310.27276 * 6 5 4 9 9 N 1.31404 * 119.99684 * 353.54749 * 8 6 5 10 10 Si 1.86799 * 120.00296 * 173.55173 * 8 6 5 11 11 H 1.48500 * 109.47053 * 89.99566 * 10 8 6 12 12 H 1.48500 * 109.46921 * 209.99992 * 10 8 6 13 13 H 1.48499 * 109.46982 * 329.99967 * 10 8 6 14 14 C 1.34784 * 119.99611 * 89.99760 * 5 4 3 15 15 O 1.21736 * 119.99973 * 3.87124 * 14 5 4 16 16 C 1.46459 * 119.99832 * 183.86798 * 14 5 4 17 17 C 1.36766 * 125.46009 * 173.59028 * 16 14 5 18 18 C 1.37449 * 113.27519 * 179.73401 * 17 16 14 19 19 C 1.50702 * 122.44290 * 180.22029 * 18 17 16 20 20 C 1.33848 * 115.10894 * 0.24328 * 18 17 16 21 21 C 1.50702 * 124.51442 * 179.97438 * 20 18 17 22 22 S 1.70608 * 110.97113 * 0.02562 * 20 18 17 23 23 H 1.09002 * 109.46824 * 299.99660 * 1 2 3 24 24 H 1.09003 * 109.47315 * 59.99512 * 1 2 3 25 25 H 1.09005 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46535 * 60.00746 * 3 2 1 27 27 H 1.08994 * 109.47036 * 300.00379 * 3 2 1 28 28 H 1.09009 * 109.46909 * 305.00148 * 4 3 2 29 29 H 1.08994 * 109.47024 * 185.00703 * 4 3 2 30 30 H 0.97001 * 119.99903 * 185.00489 * 9 8 6 31 31 H 1.07998 * 123.36434 * 0.02562 * 17 16 14 32 32 H 1.09006 * 109.47022 * 90.02785 * 19 18 17 33 33 H 1.09003 * 109.47195 * 210.02544 * 19 18 17 34 34 H 1.09000 * 109.47124 * 330.02521 * 19 18 17 35 35 H 1.09007 * 109.46610 * 89.99915 * 21 20 18 36 36 H 1.08998 * 109.47399 * 210.00233 * 21 20 18 37 37 H 1.08999 * 109.47118 * 330.00754 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3369 7 1 3.6447 -1.3288 -2.1607 8 6 4.8014 -1.4932 -0.3621 9 7 5.4575 -0.8378 0.5689 10 14 4.8158 -3.3611 -0.3756 11 1 5.9590 -3.8414 -1.1926 12 1 4.9542 -3.8651 1.0144 13 1 3.5454 -3.8616 -0.9595 14 6 4.2615 1.3338 -2.3218 15 8 4.2220 2.5468 -2.2267 16 6 4.6196 0.7105 -3.5978 17 6 4.8085 1.3732 -4.7792 18 6 5.1440 0.5416 -5.8208 19 6 5.4038 1.0549 -7.2137 20 6 5.2227 -0.7574 -5.5078 21 6 5.5729 -1.8512 -6.4836 22 16 4.8724 -1.0101 -3.8573 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 6.0079 -1.3205 1.2053 31 1 4.7089 2.4437 -4.8822 32 1 6.4618 1.2938 -7.3215 33 1 5.1282 0.2901 -7.9400 34 1 4.8092 1.9518 -7.3872 35 1 6.6528 -1.9995 -6.4907 36 1 5.0810 -2.7765 -6.1841 37 1 5.2385 -1.5684 -7.4817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317178952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -71.984465 kcal Electronic energy + Delta-G solvation = -20682.459629 eV Core-core repulsion = 17550.872053 eV Total energy + Delta-G solvation = -3131.587576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63768 -39.13462 -38.44301 -36.63043 -33.65800 -33.05318 -31.09437 -30.20438 -27.41517 -27.03673 -26.30240 -24.49900 -22.97341 -21.25313 -19.81248 -18.84377 -18.19848 -17.32531 -17.22009 -16.61389 -16.36789 -15.98002 -15.94640 -15.46850 -15.11120 -14.80547 -14.43076 -13.92129 -13.59930 -13.57770 -13.51565 -13.20833 -12.99431 -12.87076 -12.83277 -12.58866 -12.53397 -12.34150 -12.30300 -12.06649 -11.87557 -11.38721 -10.81120 -10.59689 -10.49609 -9.53737 -9.14127 -9.01192 -8.35352 -6.23961 -0.11907 0.96726 1.39294 1.46360 1.53906 1.60088 1.63986 2.25626 2.52720 2.86202 2.98037 3.14876 4.11266 4.18111 4.22713 4.39285 4.47430 4.49944 4.51727 4.59143 4.59613 4.71226 4.77673 4.78487 4.82833 4.86088 4.95605 5.11575 5.21270 5.26332 5.28703 5.42756 5.65746 5.83364 6.00089 6.30700 6.39373 7.02318 7.45149 7.90005 8.67727 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.007529 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.073067 B = 3718.293995 C = 4646.351987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.065 3.935 4 C 0.116 3.884 5 N -0.433 5.433 6 C -0.333 4.333 7 H 0.098 0.902 8 C 0.028 3.972 9 N -0.885 5.885 10 Si 0.959 3.041 11 H -0.256 1.256 12 H -0.277 1.277 13 H -0.252 1.252 14 C 0.525 3.475 15 O -0.635 6.635 16 C -0.269 4.269 17 C -0.090 4.090 18 C -0.142 4.142 19 C -0.084 4.084 20 C -0.271 4.271 21 C -0.075 4.075 22 S 0.275 5.725 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.277 0.723 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -4.501 -8.272 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.013 4.013 4 C -0.008 4.008 5 N -0.149 5.149 6 C -0.466 4.466 7 H 0.115 0.885 8 C -0.178 4.178 9 N -0.520 5.520 10 Si 0.780 3.220 11 H -0.181 1.181 12 H -0.202 1.202 13 H -0.176 1.176 14 C 0.316 3.684 15 O -0.526 6.526 16 C -0.389 4.389 17 C -0.125 4.125 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.390 4.390 21 C -0.133 4.133 22 S 0.549 5.451 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.297 -5.452 -7.085 9.528 hybrid contribution -0.055 1.307 -0.279 1.338 sum -3.352 -4.144 -7.363 9.090 Atomic orbital electron populations 1.22896 0.80633 1.03429 1.00187 1.88074 1.20438 1.27523 1.95292 1.22805 0.94187 0.84803 0.99467 1.21439 0.91647 0.97929 0.89764 1.43287 1.55943 1.06467 1.09232 1.19352 1.34830 0.81158 1.11248 0.88549 1.26266 0.92994 1.04251 0.94274 1.69848 1.26772 1.38565 1.16782 0.85419 0.80348 0.77634 0.78575 1.18080 1.20159 1.17585 1.17875 0.79681 0.85914 0.84906 1.90581 1.60891 1.15055 1.86027 1.24467 1.17112 0.99540 0.97809 1.20579 1.00537 1.00453 0.90897 1.18730 1.06399 0.92191 0.97998 1.20490 1.01995 1.01358 0.90409 1.25658 1.07994 0.99707 1.05641 1.20381 1.02266 0.94066 0.96634 1.84109 1.60804 1.02817 0.97355 0.92864 0.94488 0.88636 0.91068 0.95409 0.88660 0.92153 0.91276 0.85112 0.91036 0.89937 0.91695 0.90092 0.90896 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 1.99 16 2 O -0.39 -16.51 10.18 -148.98 -1.52 -18.03 16 3 C 0.07 2.72 6.28 71.98 0.45 3.18 16 4 C 0.12 5.73 5.43 86.38 0.47 6.20 16 5 N -0.43 -22.89 2.42 -640.29 -1.55 -24.44 16 6 C -0.33 -16.90 6.36 84.09 0.53 -16.37 16 7 H 0.10 4.76 5.30 -16.43 -0.09 4.68 16 8 C 0.03 1.41 5.21 84.94 0.44 1.85 16 9 N -0.88 -46.56 11.49 21.68 0.25 -46.31 16 10 Si 0.96 38.39 29.56 68.60 2.03 40.41 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 12 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 13 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 14 C 0.52 28.48 7.59 86.38 0.66 29.13 16 15 O -0.63 -36.95 16.41 -4.46 -0.07 -37.03 16 16 C -0.27 -12.76 6.30 24.07 0.15 -12.61 16 17 C -0.09 -3.75 9.81 21.74 0.21 -3.54 16 18 C -0.14 -4.83 5.78 -21.05 -0.12 -4.95 16 19 C -0.08 -2.05 9.84 71.24 0.70 -1.35 16 20 C -0.27 -8.93 6.28 24.69 0.15 -8.78 16 21 C -0.08 -1.74 9.98 71.24 0.71 -1.03 16 22 S 0.28 11.06 18.29 -56.49 -1.03 10.03 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 4.98 5.90 -2.38 -0.01 4.97 16 29 H 0.06 3.07 7.37 -2.39 -0.02 3.05 16 30 H 0.28 13.67 8.32 -92.71 -0.77 12.90 16 31 H 0.13 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.62 6.54 -2.39 -0.02 1.61 16 34 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.67 6.57 -2.39 -0.02 1.65 16 Total: -1.00 -65.52 320.85 4.72 -60.79 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.00 Total: 20.84 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 5.61 Total: -6.27 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.30 Total: -70.75 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.59 Total: -55.06 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 11.06 SS G_CDS: -1.03 Total: 10.03 kcal Total: -65.52 4.72 -60.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317178952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.190 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds