Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42910 * 114.00428 * 2 1 4 4 C 1.52999 * 109.47351 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46887 * 65.00219 * 4 3 2 6 6 C 1.46498 * 120.00197 * 84.33826 * 5 4 3 7 7 C 1.50701 * 109.46878 * 94.63135 * 6 5 4 8 8 H 1.08000 * 120.00476 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99814 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00162 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99877 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47104 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47111 * 119.99533 * 11 9 7 14 14 H 1.48494 * 109.47172 * 240.00011 * 11 9 7 15 15 C 1.34780 * 119.99704 * 264.33751 * 5 4 3 16 16 O 1.21699 * 120.00142 * 5.66544 * 15 5 4 17 17 C 1.46589 * 119.99632 * 185.66421 * 15 5 4 18 18 C 1.36648 * 125.45476 * 186.38314 * 17 15 5 19 19 C 1.37473 * 113.29636 * 179.97438 * 18 17 15 20 20 C 1.50701 * 122.44903 * 179.97438 * 19 18 17 21 21 C 1.33816 * 115.09908 * 359.97438 * 19 18 17 22 22 S 1.70617 * 110.95594 * 359.76306 * 21 19 18 23 23 H 1.09007 * 109.47287 * 300.00229 * 1 2 3 24 24 H 1.09007 * 109.47291 * 59.99975 * 1 2 3 25 25 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46775 * 59.99720 * 3 2 1 27 27 H 1.09004 * 109.46608 * 300.00159 * 3 2 1 28 28 H 1.08994 * 109.47179 * 305.00156 * 4 3 2 29 29 H 1.09001 * 109.46512 * 184.99894 * 4 3 2 30 30 H 1.09000 * 109.47379 * 214.62767 * 6 5 4 31 31 H 1.08996 * 109.47239 * 334.62962 * 6 5 4 32 32 H 0.97001 * 119.99904 * 180.02562 * 10 9 7 33 33 H 1.08003 * 123.35386 * 359.97438 * 18 17 15 34 34 H 1.08996 * 109.47412 * 89.99544 * 20 19 18 35 35 H 1.09001 * 109.46610 * 209.99575 * 20 19 18 36 36 H 1.08999 * 109.46671 * 329.99411 * 20 19 18 37 37 H 1.08005 * 124.52013 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1688 1.3859 -2.4482 7 6 5.6160 1.7937 -2.5506 8 1 6.3221 1.4723 -1.7992 9 6 6.0387 2.5770 -3.6036 10 7 5.1791 2.9680 -4.5189 11 14 7.8326 3.0819 -3.7309 12 1 8.5886 2.5161 -2.5847 13 1 8.4025 2.5679 -5.0023 14 1 7.9330 4.5632 -3.7065 15 6 4.2057 -0.7633 -1.3007 16 8 3.9482 -1.4618 -0.3380 17 6 4.7650 -1.3654 -2.5146 18 6 4.9265 -2.7046 -2.7331 19 6 5.4754 -2.9930 -3.9600 20 6 5.7438 -4.4046 -4.4141 21 6 5.7540 -1.9285 -4.7216 22 16 5.3278 -0.4806 -3.9259 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8426 29 1 3.9784 2.1766 0.0902 30 1 3.8898 0.8118 -3.3318 31 1 3.5442 2.2767 -2.3816 32 1 5.4765 3.5187 -5.2599 33 1 4.6504 -3.4612 -2.0135 34 1 4.8674 -4.7921 -4.9335 35 1 6.5994 -4.4125 -5.0894 36 1 5.9589 -5.0302 -3.5478 37 1 6.1866 -1.9793 -5.7099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393453703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -66.079992 kcal Electronic energy + Delta-G solvation = -20704.266343 eV Core-core repulsion = 17572.934804 eV Total energy + Delta-G solvation = -3131.331539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76705 -38.95657 -38.40355 -36.71926 -34.67601 -32.28907 -30.88348 -29.01409 -28.35963 -27.22871 -25.46143 -25.00781 -23.06391 -20.49816 -19.70779 -18.78633 -18.44264 -17.56315 -17.26957 -16.66887 -16.53876 -16.27061 -16.00872 -15.47163 -15.07784 -14.55547 -14.36012 -14.23585 -13.85290 -13.67087 -13.49841 -13.14207 -13.06583 -12.88664 -12.73418 -12.62509 -12.59195 -12.46857 -12.10512 -11.93894 -11.71429 -10.94346 -10.77136 -10.54445 -10.49901 -9.68920 -9.31669 -8.96474 -8.23189 -6.28980 -0.12548 1.05236 1.39216 1.47743 1.55550 1.60487 1.62820 2.27152 2.39950 2.48106 2.97228 3.09700 3.86932 4.16027 4.24961 4.27209 4.41141 4.46626 4.52672 4.54617 4.60804 4.63718 4.78812 4.82267 4.82517 4.91337 4.93694 5.12878 5.13552 5.19730 5.62428 5.66574 5.76913 5.82045 5.92362 6.34111 6.51457 6.76435 7.27277 7.39732 8.80227 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.008855 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.985237 B = 3161.307812 C = 4987.591839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.234 3.766 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.051 3.949 10 N -0.894 5.894 11 Si 0.934 3.066 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.275 1.275 15 C 0.585 3.415 16 O -0.579 6.579 17 C -0.316 4.316 18 C -0.081 4.081 19 C -0.140 4.140 20 C -0.085 4.085 21 C -0.330 4.330 22 S 0.360 5.640 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.273 0.727 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 -3.904 0.944 5.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.327 5.327 6 C 0.112 3.888 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.154 4.154 10 N -0.531 5.531 11 Si 0.759 3.241 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.200 1.200 15 C 0.375 3.625 16 O -0.462 6.462 17 C -0.437 4.437 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.468 4.468 22 S 0.639 5.361 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.210 -2.779 0.797 4.320 hybrid contribution 0.587 -0.789 0.149 0.995 sum -2.622 -3.568 0.946 4.528 Atomic orbital electron populations 1.22860 0.80266 1.03116 1.00652 1.88067 1.20853 1.28385 1.95474 1.23015 0.93618 0.84858 1.01287 1.21572 0.93133 0.99496 0.86383 1.47936 1.65152 1.06652 1.12914 1.19451 0.96889 0.90632 0.81858 1.21509 0.94284 1.32236 1.09835 0.92547 1.25357 1.00685 0.94623 0.94734 1.69970 1.35637 1.34953 1.12554 0.85849 0.81197 0.78488 0.78560 1.19683 1.19799 1.19993 1.17212 0.77056 0.82169 0.86074 1.90667 1.55272 1.62005 1.38270 1.24840 1.17055 0.99230 1.02603 1.20540 0.99570 0.93931 0.97574 1.18811 1.04446 0.98027 0.93968 1.20488 1.02187 0.90156 1.01563 1.26806 1.09879 1.03504 1.06605 1.86236 1.49381 0.98647 1.01856 0.92339 0.93985 0.89599 0.89746 0.93388 0.90726 0.87445 0.94635 0.94134 0.91699 0.84435 0.90825 0.90831 0.91272 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.92 9.94 -148.73 -1.48 -16.40 16 3 C 0.05 1.59 6.28 71.98 0.45 2.04 16 4 C 0.12 4.31 5.81 86.38 0.50 4.81 16 5 N -0.60 -26.28 2.42 -830.99 -2.02 -28.30 16 6 C 0.23 10.80 4.74 85.63 0.41 11.20 16 7 C -0.54 -25.73 6.61 25.60 0.17 -25.56 16 8 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.05 2.41 4.86 84.66 0.41 2.83 16 10 N -0.89 -43.86 13.29 21.45 0.28 -43.57 16 11 Si 0.93 38.52 29.54 68.60 2.03 40.54 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 15 C 0.59 27.79 7.38 86.42 0.64 28.42 16 16 O -0.58 -29.49 15.90 -4.09 -0.07 -29.56 16 17 C -0.32 -14.11 6.20 24.08 0.15 -13.97 16 18 C -0.08 -3.22 9.80 21.72 0.21 -3.00 16 19 C -0.14 -4.87 5.78 -21.05 -0.12 -4.99 16 20 C -0.09 -2.17 10.13 71.24 0.72 -1.45 16 21 C -0.33 -11.85 10.67 66.81 0.71 -11.14 16 22 S 0.36 15.24 15.55 -56.49 -0.88 14.36 16 23 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.07 2.88 7.34 -2.39 -0.02 2.86 16 29 H 0.11 3.54 8.11 -2.39 -0.02 3.52 16 30 H 0.04 1.75 4.91 -19.13 -0.09 1.66 16 31 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 32 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 33 H 0.14 5.28 8.06 -2.91 -0.02 5.25 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 36 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 37 H 0.17 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -59.66 322.96 4.35 -55.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.98 Total: 16.46 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.50 Total: -8.85 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.73 Total: -71.87 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.54 Total: -45.95 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 16 Polarization: 15.24 SS G_CDS: -0.88 Total: 14.36 kcal Total: -59.66 4.35 -55.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393453703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.767 kcal (2) G-P(sol) polarization free energy of solvation -59.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds