Wall clock time and date at job start Tue Mar 31 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34902 * 116.99847 * 2 1 4 4 O 1.21627 * 119.99917 * 359.97438 * 3 2 1 5 5 C 1.46389 * 119.99773 * 179.97438 * 3 2 1 6 6 C 1.36759 * 125.46488 * 180.30220 * 5 3 2 7 7 C 1.37408 * 113.29035 * 180.17802 * 6 5 3 8 8 C 1.50699 * 122.44392 * 179.82118 * 7 6 5 9 9 N 1.46906 * 109.47140 * 259.71136 * 8 7 6 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47149 * 35.00177 * 10 9 8 12 12 C 1.52995 * 109.47098 * 274.99671 * 10 9 8 13 13 C 1.50703 * 109.46870 * 154.99992 * 10 9 8 14 14 H 1.07997 * 119.99979 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00027 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00202 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.46924 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46578 * 120.00311 * 17 15 13 20 20 H 1.48494 * 109.47426 * 240.00185 * 17 15 13 21 21 C 1.33864 * 115.10990 * 359.55460 * 7 6 5 22 22 C 1.50693 * 124.51736 * 180.24859 * 21 7 6 23 23 S 1.70618 * 110.96377 * 0.24208 * 21 7 6 24 24 H 1.08995 * 109.47098 * 60.00610 * 1 2 3 25 25 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47353 * 300.00252 * 1 2 3 27 27 H 1.07998 * 123.34998 * 359.97438 * 6 5 3 28 28 H 1.09000 * 109.47247 * 139.71157 * 8 7 6 29 29 H 1.09001 * 109.47358 * 19.70583 * 8 7 6 30 30 H 1.00902 * 110.99923 * 303.95945 * 9 8 7 31 31 H 1.09000 * 109.47371 * 60.00269 * 12 10 9 32 32 H 1.09002 * 109.47594 * 180.02562 * 12 10 9 33 33 H 1.09002 * 109.47229 * 300.00584 * 12 10 9 34 34 H 0.97003 * 119.99990 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.47398 * 89.99406 * 22 21 7 36 36 H 1.08998 * 109.47079 * 209.99273 * 22 21 7 37 37 H 1.08998 * 109.47432 * 329.99680 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 -0.0005 5 6 3.5263 1.2786 0.0006 6 6 4.2604 2.4324 0.0065 7 6 5.6169 2.2134 0.0016 8 6 6.6178 3.3400 0.0027 9 7 7.1239 3.5467 -1.3608 10 6 8.1047 4.6396 -1.3982 11 1 8.6862 4.6376 -0.4763 12 6 7.3737 5.9764 -1.5373 13 6 9.0271 4.4467 -2.5742 14 1 8.8979 3.5970 -3.2282 15 6 10.0360 5.3550 -2.8154 16 7 10.1937 6.3894 -2.0187 17 14 11.1798 5.1155 -4.2727 18 1 10.7944 3.8838 -5.0071 19 1 11.0759 6.2859 -5.1809 20 1 12.5778 4.9870 -3.7889 21 6 5.9844 0.9262 0.0015 22 6 7.4128 0.4460 0.0020 23 16 4.6200 -0.0982 0.0008 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.8180 3.4176 0.0110 28 1 7.4471 3.0885 0.6639 29 1 6.1369 4.2529 0.3540 30 1 7.5170 2.6955 -1.7335 31 1 6.7066 6.1160 -0.6867 32 1 8.1015 6.7874 -1.5655 33 1 6.7922 5.9783 -2.4592 34 1 10.9037 7.0282 -2.1881 35 1 7.7569 0.3300 1.0298 36 1 7.4738 -0.5133 -0.5119 37 1 8.0411 1.1738 -0.5114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:07 Heat of formation + Delta-G solvation = -59.176512 kcal Electronic energy + Delta-G solvation = -19514.923896 eV Core-core repulsion = 16383.891715 eV Total energy + Delta-G solvation = -3131.032181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39380 -38.70466 -36.51342 -35.46096 -32.71489 -31.90686 -29.33842 -28.48437 -26.80541 -25.33844 -24.30197 -23.56873 -20.88672 -19.79299 -18.76082 -18.36877 -16.79873 -16.49847 -16.47210 -16.09215 -14.97089 -14.49396 -14.32078 -14.11531 -13.49759 -13.43250 -13.31303 -13.21198 -12.61761 -12.34724 -12.20508 -11.92747 -11.77920 -11.65421 -11.28774 -10.99863 -10.99176 -10.77179 -10.73317 -10.61228 -10.28480 -10.14332 -9.97596 -8.86177 -8.65651 -8.52410 -8.35657 -7.30632 -6.05426 -4.12113 0.38702 1.45631 1.90074 2.21886 2.52879 2.95358 3.26743 3.35025 3.38906 4.38223 4.74080 4.83791 4.88878 4.96785 5.15412 5.23060 5.26034 5.29306 5.48729 5.54213 5.65696 5.78822 5.90833 6.06189 6.14054 6.16024 6.39329 6.60419 6.87001 7.12650 7.20956 7.47125 7.59042 7.75316 7.86723 8.25079 8.34802 8.62245 8.98290 9.54152 11.00824 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.003548 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.635606 B = 7890.458824 C = 8328.312388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.359 6.359 3 C 0.544 3.456 4 O -0.502 6.502 5 C -0.282 4.282 6 C -0.007 4.007 7 C -0.111 4.111 8 C 0.116 3.884 9 N -0.682 5.682 10 C 0.211 3.789 11 H 0.002 0.998 12 C -0.125 4.125 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.285 1.285 21 C -0.180 4.180 22 C -0.091 4.091 23 S 0.221 5.779 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.155 0.845 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.330 0.670 31 H 0.005 0.995 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 -14.539 6.422 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.388 3.612 4 O -0.392 6.392 5 C -0.399 4.399 6 C -0.042 4.042 7 C -0.123 4.123 8 C -0.015 4.015 9 N -0.314 5.314 10 C 0.104 3.896 11 H 0.020 0.980 12 C -0.184 4.184 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.300 4.300 22 C -0.149 4.149 23 S 0.491 5.509 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.172 0.828 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.024 0.976 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.505 -15.286 6.256 21.335 hybrid contribution 1.358 1.254 -0.403 1.892 sum -12.147 -14.032 5.852 19.460 Atomic orbital electron populations 1.23267 0.75819 1.03689 1.02737 1.86581 1.23686 1.32450 1.84873 1.19666 0.87178 0.81578 0.72735 1.90891 1.65989 1.35832 1.46463 1.23230 0.93456 0.98765 1.24483 1.20678 0.92118 0.98372 0.93012 1.18806 0.94436 0.94635 1.04428 1.20592 0.94082 0.94109 0.92739 1.60816 1.42864 1.10537 1.17179 1.19136 0.87268 0.87161 0.96028 0.98036 1.21723 0.98783 1.00724 0.97145 1.21284 1.12858 1.09804 1.11754 0.92182 1.24917 0.97439 0.95069 0.96549 1.69907 1.32279 1.12992 1.37597 0.86472 0.80396 0.78204 0.82518 1.19741 1.20957 1.21099 1.24290 1.01757 0.97622 1.06346 1.20481 0.89215 1.02072 1.03151 1.82917 0.92700 1.06899 1.68391 0.91729 0.87978 0.91794 0.82786 0.94933 0.90669 0.85208 0.97640 0.90068 0.94912 0.92948 0.90302 0.90956 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.28 10.42 -41.05 -0.43 -4.71 16 3 C 0.54 7.82 7.92 34.01 0.27 8.08 16 4 O -0.50 -8.33 16.64 -19.36 -0.32 -8.66 16 5 C -0.28 -4.00 6.45 -36.84 -0.24 -4.23 16 6 C -0.01 -0.11 9.76 -40.42 -0.39 -0.51 16 7 C -0.11 -1.70 5.29 -106.46 -0.56 -2.26 16 8 C 0.12 2.04 5.04 -4.97 -0.03 2.02 16 9 N -0.68 -14.24 6.29 -109.22 -0.69 -14.93 16 10 C 0.21 5.24 2.60 -68.87 -0.18 5.06 16 11 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 12 C -0.13 -3.11 9.19 37.15 0.34 -2.77 16 13 C -0.52 -13.98 8.59 -34.44 -0.30 -14.27 16 14 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C -0.18 -2.39 6.28 -35.85 -0.23 -2.62 16 22 C -0.09 -1.04 9.77 36.00 0.35 -0.69 16 23 S 0.22 2.61 22.87 -107.50 -2.46 0.16 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.03 0.56 7.64 -51.93 -0.40 0.17 16 29 H 0.07 1.34 7.37 -51.93 -0.38 0.96 16 30 H 0.33 6.68 6.87 -39.29 -0.27 6.41 16 31 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 32 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.17 6.14 -51.93 -0.32 0.85 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -30.24 327.34 -8.31 -38.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.97 Total: 2.35 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 0.01 Total: -9.20 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.41 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.75 Total: -13.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.46 Total: 0.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.24 -8.31 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.623 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds