Wall clock time and date at job start Tue Mar 31 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38671 * 120.78989 * 2 1 4 4 C 1.38177 * 119.16295 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.61675 * 180.02562 * 4 3 2 6 6 N 1.31889 * 120.76466 * 0.02562 * 4 3 2 7 7 C 1.31847 * 121.72783 * 359.97438 * 6 4 3 8 8 S 1.76195 * 119.62127 * 180.02562 * 7 6 4 9 9 O 1.42100 * 104.27498 * 333.92315 * 8 7 6 10 10 O 1.42103 * 104.27888 * 206.07088 * 8 7 6 11 11 C 1.81399 * 104.45175 * 89.99595 * 8 7 6 12 12 C 1.52999 * 109.46810 * 180.02562 * 11 8 7 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47240 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00243 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46921 * 60.00420 * 18 16 14 20 20 H 1.48506 * 109.46938 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47056 * 300.00305 * 18 16 14 22 22 C 1.38233 * 120.75871 * 0.27100 * 7 6 4 23 23 H 1.09003 * 109.46829 * 89.99510 * 1 2 3 24 24 H 1.08997 * 109.47078 * 209.99996 * 1 2 3 25 25 H 1.09003 * 109.47050 * 330.00120 * 1 2 3 26 26 H 1.08005 * 120.41515 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.46618 * 270.01839 * 5 4 3 28 28 H 1.08997 * 109.47277 * 30.01884 * 5 4 3 29 29 H 1.09003 * 109.46995 * 150.02305 * 5 4 3 30 30 H 1.09000 * 109.47070 * 300.00246 * 11 8 7 31 31 H 1.09001 * 109.46593 * 60.00243 * 11 8 7 32 32 H 1.09000 * 109.47486 * 299.99969 * 12 11 8 33 33 H 1.09001 * 109.47362 * 60.00691 * 12 11 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 35 35 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 36 36 H 0.96992 * 120.00032 * 179.97438 * 17 16 14 37 37 H 1.08009 * 120.41452 * 179.71071 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 6 4.3798 2.4405 0.0000 6 7 4.2403 0.0000 -0.0016 7 6 3.5984 -1.1516 -0.0016 8 16 4.5123 -2.6580 -0.0023 9 8 5.7514 -2.3159 -0.6080 10 8 3.6363 -3.5992 -0.6074 11 6 4.7479 -3.0454 1.7541 12 6 5.5390 -4.3482 1.8873 13 6 5.7372 -4.6753 3.3688 14 6 6.5170 -5.9582 3.5000 15 1 6.8394 -6.4871 2.6153 16 6 6.8197 -6.4561 4.7495 17 7 6.4275 -5.8118 5.8270 18 14 7.7857 -8.0467 4.9123 19 1 9.1096 -7.8909 4.2578 20 1 7.9781 -8.3641 6.3502 21 1 7.0370 -9.1496 4.2583 22 6 2.2166 -1.1908 -0.0062 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6967 2.1378 0.0004 27 1 4.5676 2.7519 -1.0275 28 1 3.8077 3.2123 0.5149 29 1 5.3296 2.2890 0.5131 30 1 5.2979 -2.2360 2.2341 31 1 3.7761 -3.1593 2.2345 32 1 4.9894 -5.1578 1.4072 33 1 6.5108 -4.2339 1.4070 34 1 6.2866 -3.8658 3.8493 35 1 4.7653 -4.7898 3.8488 36 1 6.6402 -6.1623 6.7060 37 1 1.6965 -2.1374 -0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615777672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:29 Heat of formation + Delta-G solvation = -58.761684 kcal Electronic energy + Delta-G solvation = -19535.894136 eV Core-core repulsion = 16404.879943 eV Total energy + Delta-G solvation = -3131.014193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59880 -36.90279 -35.74053 -34.68485 -34.50067 -33.12805 -32.18827 -28.45090 -27.89669 -27.76517 -24.35067 -23.52345 -21.59289 -20.54440 -18.83942 -17.48749 -17.02774 -16.60851 -16.26890 -15.68185 -15.53348 -14.91254 -14.47369 -14.27757 -14.21630 -13.69390 -13.21807 -12.96760 -12.73389 -12.68808 -12.55462 -12.29664 -12.23801 -11.92486 -11.81770 -11.75866 -11.30757 -11.12826 -10.88499 -10.86817 -10.41595 -9.94265 -9.91645 -9.77991 -9.50284 -9.34557 -9.11620 -8.39188 -6.04417 -4.07607 0.11753 0.46480 0.87172 2.92649 3.17039 3.33735 3.37466 3.40778 3.81650 4.01925 4.20044 4.43742 4.48147 4.62800 4.63337 4.78149 5.00844 5.12548 5.13680 5.19956 5.21839 5.31546 5.32199 5.33162 5.46378 5.64082 5.76132 5.83459 5.86083 6.26029 6.27594 6.43593 6.86100 7.46214 7.57678 7.67397 7.93377 8.33344 8.98340 9.57042 11.06777 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003511 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.818602 B = 7972.397044 C = 8000.226294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 C -0.129 4.129 4 C 0.110 3.890 5 C -0.104 4.104 6 N -0.398 5.398 7 C -0.414 4.414 8 S 2.487 3.513 9 O -0.920 6.920 10 O -0.937 6.937 11 C -0.578 4.578 12 C -0.107 4.107 13 C 0.031 3.969 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.098 4.098 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 16.242 -10.547 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.031 4.031 5 C -0.162 4.162 6 N -0.109 5.109 7 C -0.632 4.632 8 S 2.666 3.334 9 O -0.917 6.917 10 O -0.933 6.933 11 C -0.711 4.711 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.119 4.119 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.159 0.841 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.782 15.841 -11.133 22.161 hybrid contribution -0.881 -0.173 0.801 1.203 sum -11.663 15.668 -10.332 22.097 Atomic orbital electron populations 1.20870 0.89372 1.03882 1.03296 1.20466 0.97293 0.92826 0.95847 1.22121 0.94914 0.98960 0.98838 1.21631 0.91507 0.94555 0.95374 1.20743 1.00629 0.91310 1.03472 1.67663 1.39367 0.96776 1.07060 1.33571 1.04063 1.16142 1.09414 1.06302 0.74513 0.73082 0.79528 1.93558 1.42010 1.82184 1.73931 1.93567 1.66529 1.58738 1.74505 1.30235 1.11011 1.09979 1.19890 1.21593 0.98135 0.90532 1.04420 1.19078 0.97505 0.96910 0.87291 1.21210 1.35136 1.07741 0.92406 0.92317 1.25015 0.95960 0.97484 0.95875 1.69949 1.46389 1.39350 0.97770 0.86606 0.80592 0.83615 0.76925 1.20083 1.21277 1.20114 1.21948 0.93725 1.00253 0.95956 0.90143 0.90359 0.90707 0.84130 0.90088 0.90493 0.89772 0.84668 0.85071 0.91246 0.91140 0.95947 0.96008 0.92841 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.06 36.01 0.36 -0.38 16 2 C -0.06 -0.55 5.92 -104.32 -0.62 -1.17 16 3 C -0.13 -1.21 9.45 -39.44 -0.37 -1.58 16 4 C 0.11 1.29 6.78 -82.59 -0.56 0.73 16 5 C -0.10 -0.85 10.17 36.01 0.37 -0.49 16 6 N -0.40 -5.93 9.96 -8.68 -0.09 -6.02 16 7 C -0.41 -6.03 6.53 -17.55 -0.11 -6.14 16 8 S 2.49 39.88 5.22 -107.50 -0.56 39.32 16 9 O -0.92 -17.64 17.73 -57.54 -1.02 -18.66 16 10 O -0.94 -16.31 17.10 -57.54 -0.98 -17.30 16 11 C -0.58 -9.17 5.98 37.16 0.22 -8.95 16 12 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 13 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 14 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.10 -1.19 9.22 -39.44 -0.36 -1.56 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 25 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 26 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.14 1.99 8.14 -51.92 -0.42 1.57 16 31 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.16 1.62 7.56 -52.48 -0.40 1.22 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -35.84 332.19 -9.12 -44.96 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.43 Total: -3.29 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: -1.76 Total: -34.74 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.65 Total: -31.82 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -2.00 Total: -35.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.56 Total: 39.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.84 -9.12 -44.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615777672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.804 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds