Wall clock time and date at job start Tue Mar 31 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38671 * 120.78989 * 2 1 4 4 C 1.38177 * 119.16295 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.61675 * 180.02562 * 4 3 2 6 6 N 1.31889 * 120.76466 * 0.02562 * 4 3 2 7 7 C 1.31847 * 121.72783 * 359.97438 * 6 4 3 8 8 S 1.76195 * 119.62127 * 180.02562 * 7 6 4 9 9 O 1.42100 * 104.27498 * 333.92315 * 8 7 6 10 10 O 1.42103 * 104.27888 * 206.07088 * 8 7 6 11 11 C 1.81399 * 104.45175 * 89.99595 * 8 7 6 12 12 C 1.52999 * 109.46810 * 180.02562 * 11 8 7 13 13 C 1.53006 * 109.46997 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47240 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00243 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46921 * 60.00420 * 18 16 14 20 20 H 1.48506 * 109.46938 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47056 * 300.00305 * 18 16 14 22 22 C 1.38233 * 120.75871 * 0.27100 * 7 6 4 23 23 H 1.09003 * 109.46829 * 89.99510 * 1 2 3 24 24 H 1.08997 * 109.47078 * 209.99996 * 1 2 3 25 25 H 1.09003 * 109.47050 * 330.00120 * 1 2 3 26 26 H 1.08005 * 120.41515 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.46618 * 270.01839 * 5 4 3 28 28 H 1.08997 * 109.47277 * 30.01884 * 5 4 3 29 29 H 1.09003 * 109.46995 * 150.02305 * 5 4 3 30 30 H 1.09000 * 109.47070 * 300.00246 * 11 8 7 31 31 H 1.09001 * 109.46593 * 60.00243 * 11 8 7 32 32 H 1.09000 * 109.47486 * 299.99969 * 12 11 8 33 33 H 1.09001 * 109.47362 * 60.00691 * 12 11 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 13 12 11 35 35 H 1.08996 * 109.47261 * 59.99820 * 13 12 11 36 36 H 0.96992 * 120.00032 * 179.97438 * 17 16 14 37 37 H 1.08009 * 120.41452 * 179.71071 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 6 4.3798 2.4405 0.0000 6 7 4.2403 0.0000 -0.0016 7 6 3.5984 -1.1516 -0.0016 8 16 4.5123 -2.6580 -0.0023 9 8 5.7514 -2.3159 -0.6080 10 8 3.6363 -3.5992 -0.6074 11 6 4.7479 -3.0454 1.7541 12 6 5.5390 -4.3482 1.8873 13 6 5.7372 -4.6753 3.3688 14 6 6.5170 -5.9582 3.5000 15 1 6.8394 -6.4871 2.6153 16 6 6.8197 -6.4561 4.7495 17 7 6.4275 -5.8118 5.8270 18 14 7.7857 -8.0467 4.9123 19 1 9.1096 -7.8909 4.2578 20 1 7.9781 -8.3641 6.3502 21 1 7.0370 -9.1496 4.2583 22 6 2.2166 -1.1908 -0.0062 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6967 2.1378 0.0004 27 1 4.5676 2.7519 -1.0275 28 1 3.8077 3.2123 0.5149 29 1 5.3296 2.2890 0.5131 30 1 5.2979 -2.2360 2.2341 31 1 3.7761 -3.1593 2.2345 32 1 4.9894 -5.1578 1.4072 33 1 6.5108 -4.2339 1.4070 34 1 6.2866 -3.8658 3.8493 35 1 4.7653 -4.7898 3.8488 36 1 6.6402 -6.1623 6.7060 37 1 1.6965 -2.1374 -0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615777672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:29 Heat of formation + Delta-G solvation = -83.944224 kcal Electronic energy + Delta-G solvation = -19536.986133 eV Core-core repulsion = 16404.879943 eV Total energy + Delta-G solvation = -3132.106190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45150 -38.25805 -37.12048 -36.49470 -35.25285 -34.18271 -33.95564 -29.71500 -29.18218 -28.44335 -25.78762 -24.95831 -22.45263 -22.20976 -20.07518 -18.70414 -18.47590 -17.96701 -17.26370 -17.04895 -16.81448 -16.48379 -15.76037 -15.74645 -15.07306 -14.48583 -14.18961 -14.12824 -13.91285 -13.59546 -13.54939 -13.39516 -13.32791 -13.25324 -13.16131 -13.00666 -12.93594 -12.72891 -12.66883 -12.23953 -12.12305 -11.75437 -11.38713 -11.12322 -10.65627 -10.63504 -10.55801 -10.30925 -8.21399 -6.32498 -1.10688 -0.47851 0.05476 1.41729 1.44507 1.52312 1.73921 2.24735 2.41492 2.79365 2.84812 3.12294 3.43138 3.55578 3.68794 3.81750 3.88126 3.98538 4.04114 4.35942 4.37456 4.51179 4.60386 4.64538 4.73526 4.76560 4.87548 4.88136 5.03085 5.04672 5.14051 5.20961 5.45992 5.54758 5.62673 5.79948 6.20001 6.57890 6.82686 7.36754 8.90038 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003511 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.818602 B = 7972.397044 C = 8000.226294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.056 4.056 3 C -0.116 4.116 4 C 0.094 3.906 5 C -0.104 4.104 6 N -0.439 5.439 7 C -0.434 4.434 8 S 2.509 3.491 9 O -0.960 6.960 10 O -0.955 6.955 11 C -0.576 4.576 12 C -0.108 4.108 13 C 0.031 3.969 14 C -0.553 4.553 15 H 0.062 0.938 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.109 4.109 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.184 0.816 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.002 0.998 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 17.529 -11.000 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.048 4.048 5 C -0.161 4.161 6 N -0.151 5.151 7 C -0.654 4.654 8 S 2.692 3.308 9 O -0.957 6.957 10 O -0.952 6.952 11 C -0.708 4.708 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.591 4.591 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.130 4.130 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.202 0.798 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.173 0.827 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.466 17.077 -11.593 24.113 hybrid contribution -0.451 -0.413 0.931 1.114 sum -12.916 16.664 -10.662 23.627 Atomic orbital electron populations 1.20989 0.86507 1.05294 1.04498 1.20949 0.99250 0.92035 0.94260 1.22615 0.94064 1.00657 0.96156 1.22280 0.93149 0.94473 0.94895 1.20874 1.00229 0.90599 1.04411 1.67579 1.40790 0.97806 1.08907 1.32823 1.04720 1.15112 1.12715 1.05221 0.73658 0.73319 0.78626 1.93499 1.44328 1.83117 1.74732 1.93529 1.66645 1.60246 1.74785 1.30140 1.11766 1.08018 1.20909 1.21409 0.99146 0.93100 1.01019 1.18974 0.96006 0.95461 0.90345 1.21707 1.35575 1.08945 0.92849 0.91943 1.25936 0.96950 1.01106 0.95520 1.70068 1.47560 1.41110 0.98290 0.85521 0.79227 0.79294 0.77165 1.19298 1.20670 1.19089 1.22225 0.92925 1.02025 0.95861 0.88844 0.89917 0.88434 0.79837 0.89079 0.87235 0.91072 0.83788 0.82729 0.90583 0.91278 0.97946 0.97439 0.92633 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.06 71.24 0.72 -0.31 16 2 C -0.06 -0.95 5.92 -19.67 -0.12 -1.07 16 3 C -0.12 -1.78 9.45 22.36 0.21 -1.57 16 4 C 0.09 2.01 6.78 42.54 0.29 2.30 16 5 C -0.10 -1.48 10.17 71.24 0.72 -0.75 16 6 N -0.44 -13.01 9.96 -181.39 -1.81 -14.82 16 7 C -0.43 -12.58 6.53 84.69 0.55 -12.03 16 8 S 2.51 82.43 5.22 -56.49 -0.29 82.13 16 9 O -0.96 -38.30 17.73 -127.65 -2.26 -40.56 16 10 O -0.96 -33.73 17.10 -127.65 -2.18 -35.91 16 11 C -0.58 -18.62 5.98 71.98 0.43 -18.19 16 12 C -0.11 -4.46 5.16 30.60 0.16 -4.30 16 13 C 0.03 1.59 4.97 29.85 0.15 1.74 16 14 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 18 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C -0.11 -2.51 9.22 22.36 0.21 -2.31 16 23 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.08 0.69 8.10 -2.39 -0.02 0.67 16 25 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 26 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 31 H 0.15 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.17 3.28 7.56 -2.91 -0.02 3.26 16 Total: -1.00 -79.17 332.19 0.83 -78.35 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.05 Total: 7.40 kcal Atomic # 6 Polarization: -71.18 SS G_CDS: 4.02 Total: -67.17 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.52 Total: -70.56 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -4.45 Total: -76.47 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 82.43 SS G_CDS: -0.29 Total: 82.13 kcal Total: -79.17 0.83 -78.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615777672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.599 kcal (2) G-P(sol) polarization free energy of solvation -79.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds