Wall clock time and date at job start Tue Mar 31 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 N 1.28626 * 124.70610 * 59.99799 * 5 2 1 7 7 C 1.33603 * 115.76720 * 179.97438 * 6 5 2 8 8 C 1.47112 * 123.15186 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00027 * 180.02562 * 8 7 6 10 10 O 1.34797 * 120.00163 * 0.02562 * 8 7 6 11 11 C 1.45200 * 116.99918 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47251 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47361 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00195 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99898 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47049 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99873 * 17 15 13 20 20 H 1.48493 * 109.47012 * 239.99904 * 17 15 13 21 21 C 1.35287 * 113.69111 * 0.02562 * 7 6 5 22 22 S 1.70769 * 124.71166 * 239.69908 * 5 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 32 32 H 1.08996 * 109.47353 * 300.00041 * 11 10 8 33 33 H 1.09004 * 109.47175 * 60.00403 * 11 10 8 34 34 H 1.09005 * 109.47165 * 300.00432 * 12 11 10 35 35 H 1.09005 * 109.47015 * 59.99690 * 12 11 10 36 36 H 0.97005 * 119.99764 * 180.02562 * 16 15 13 37 37 H 1.08003 * 125.58746 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.7781 -0.3508 -2.4389 7 6 2.3164 -1.1111 -3.3966 8 6 2.1301 -0.8486 -4.8320 9 8 2.6464 -1.5786 -5.6554 10 8 1.3868 0.2016 -5.2342 11 6 1.2466 0.4001 -6.6658 12 6 0.3751 1.6302 -6.9271 13 6 0.2300 1.8367 -8.4128 14 1 0.7109 1.1581 -9.1018 15 6 -0.5167 2.8919 -8.8925 16 7 -1.1019 3.7184 -8.0535 17 14 -0.6971 3.1474 -10.7342 18 1 0.0530 2.0887 -11.4566 19 1 -2.1333 3.0779 -11.1052 20 1 -0.1540 4.4788 -11.1047 21 6 3.0479 -2.1457 -2.9224 22 16 3.0243 -2.1004 -1.2138 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 3.1300 -0.7207 1.2495 31 1 1.6766 -0.2073 2.1393 32 1 2.2305 0.5505 -7.1099 33 1 0.7777 -0.4779 -7.1101 34 1 -0.6089 1.4794 -6.4830 35 1 0.8435 2.5084 -6.4826 36 1 -1.6275 4.4606 -8.3911 37 1 3.5655 -2.8777 -3.5247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726683832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:35 Heat of formation + Delta-G solvation = -66.752653 kcal Electronic energy + Delta-G solvation = -19453.098239 eV Core-core repulsion = 16321.737531 eV Total energy + Delta-G solvation = -3131.360707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60087 -39.26576 -36.92250 -36.00562 -33.29966 -30.50839 -30.08592 -27.73056 -27.45003 -26.50250 -24.86125 -23.29397 -20.90359 -20.03403 -19.59947 -18.49817 -16.67656 -16.38164 -16.07154 -15.91379 -15.39336 -15.03251 -14.49026 -14.42470 -13.95461 -13.66474 -13.08161 -12.84497 -12.61115 -12.41156 -12.34349 -11.99907 -11.90771 -11.79010 -11.30906 -11.20917 -11.20175 -11.00183 -10.74174 -10.71941 -10.39349 -9.83849 -9.77438 -9.62014 -9.61288 -9.25052 -9.08202 -8.41279 -6.06940 -4.11217 0.33127 1.02759 1.40690 1.85153 3.16998 3.28539 3.29713 3.36994 3.42216 3.77463 4.40497 4.46167 4.60705 4.68692 4.95199 5.05311 5.20796 5.24208 5.29470 5.33855 5.52865 5.57605 5.62167 5.69883 5.75160 5.86563 6.10014 6.11564 6.12058 6.15917 6.66868 6.90417 7.35987 7.60966 7.67678 7.90276 8.19132 8.28578 8.94551 9.52803 11.04585 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.003447 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.913904 B = 8121.335272 C = 9033.576500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 C -0.137 4.137 4 C -0.155 4.155 5 C 0.037 3.963 6 N -0.415 5.415 7 C 0.038 3.962 8 C 0.536 3.464 9 O -0.510 6.510 10 O -0.332 6.332 11 C 0.073 3.927 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.231 4.231 22 S 0.206 5.794 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 -10.616 21.570 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 C -0.196 4.196 4 C -0.213 4.213 5 C -0.244 4.244 6 N -0.128 5.128 7 C -0.096 4.096 8 C 0.377 3.623 9 O -0.400 6.400 10 O -0.247 6.247 11 C 0.001 3.999 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.373 4.373 22 S 0.465 5.535 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.657 -10.790 21.927 25.610 hybrid contribution -0.199 0.271 -2.264 2.289 sum 7.458 -10.518 19.663 23.513 Atomic orbital electron populations 1.21875 0.91919 1.02457 1.03339 1.19258 0.96932 0.95314 0.87686 1.21877 1.01080 0.93299 1.03342 1.22045 1.01595 1.00691 0.96927 1.27335 1.01509 0.98711 0.96823 1.66910 1.20185 1.27383 0.98314 1.19525 1.02125 0.95085 0.92868 1.19845 0.76292 0.79399 0.86723 1.90840 1.47444 1.48021 1.53733 1.86719 1.62899 1.44149 1.30918 1.23735 1.01288 1.01582 0.73334 1.19168 0.94667 0.90349 0.97005 1.21017 1.32154 1.12335 0.90842 0.92203 1.24988 0.95284 0.95636 0.98280 1.69994 1.32775 1.15791 1.34180 0.86418 0.77904 0.78135 0.84863 1.19602 1.20841 1.20847 1.26680 1.05700 1.04108 1.00785 1.82725 1.45157 1.26241 0.99327 0.92506 0.90859 0.91491 0.91488 0.92511 0.90860 0.91803 0.91816 0.90462 0.92174 0.92180 0.95259 0.95260 0.92792 0.79207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.45 37.16 0.31 -0.94 16 2 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 3 C -0.14 -1.25 8.45 37.16 0.31 -0.94 16 4 C -0.15 -0.93 7.53 37.16 0.28 -0.65 16 5 C 0.04 0.43 5.74 -13.62 -0.08 0.36 16 6 N -0.41 -6.54 10.57 -8.53 -0.09 -6.63 16 7 C 0.04 0.62 6.71 -84.55 -0.57 0.05 16 8 C 0.54 10.71 7.94 34.33 0.27 10.99 16 9 O -0.51 -10.74 16.50 -19.31 -0.32 -11.06 16 10 O -0.33 -7.45 10.16 -40.76 -0.41 -7.86 16 11 C 0.07 1.73 5.42 37.16 0.20 1.93 16 12 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 13 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.23 -2.90 10.62 29.68 0.32 -2.58 16 22 S 0.21 1.89 21.28 -107.50 -2.29 -0.40 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.35 7.92 -51.93 -0.41 -0.07 16 30 H 0.06 0.35 7.91 -51.93 -0.41 -0.07 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.19 2.07 8.03 -52.48 -0.42 1.65 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -33.03 333.87 -7.46 -40.50 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -5.43 Total: -5.08 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 0.34 Total: -5.11 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.65 Total: -32.76 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.73 Total: -18.92 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.29 Total: -0.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.03 -7.46 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726683832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds