Wall clock time and date at job start Tue Mar 31 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47185 * 176.55090 * 3 2 1 5 5 O 1.45198 * 109.47230 * 183.38511 * 4 3 2 6 6 C 1.34868 * 116.99783 * 176.78583 * 5 4 3 7 7 O 1.21593 * 120.00056 * 5.48232 * 6 5 4 8 8 C 1.46717 * 120.00111 * 185.47891 * 6 5 4 9 9 C 1.36208 * 125.45086 * 174.78287 * 8 6 5 10 10 C 1.41663 * 107.74578 * 179.97438 * 9 8 6 11 11 C 1.40039 * 133.34077 * 179.97438 * 10 9 8 12 12 C 1.36563 * 119.83156 * 180.02562 * 11 10 9 13 13 C 1.38864 * 120.60057 * 359.97438 * 12 11 10 14 14 C 1.37836 * 120.63921 * 0.28954 * 13 12 11 15 15 C 1.39094 * 119.81333 * 359.47103 * 14 13 12 16 16 N 1.37823 * 133.15154 * 180.19154 * 15 14 13 17 17 C 1.36875 * 125.61880 * 0.28252 * 16 15 14 18 18 H 1.08001 * 119.99781 * 135.90558 * 17 16 15 19 19 C 1.39021 * 120.00106 * 315.90081 * 17 16 15 20 20 N 1.31348 * 119.99814 * 157.83402 * 19 17 16 21 21 Si 1.86792 * 120.00117 * 337.83438 * 19 17 16 22 22 H 1.48507 * 109.47124 * 95.71658 * 21 19 17 23 23 H 1.48504 * 109.47178 * 215.71218 * 21 19 17 24 24 H 1.48502 * 109.47527 * 335.71620 * 21 19 17 25 25 H 4.44649 * 5.63417 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47247 * 56.55125 * 3 2 1 27 27 H 1.09008 * 109.47322 * 296.54881 * 3 2 1 28 28 H 1.09003 * 109.47025 * 63.38106 * 4 3 2 29 29 H 1.08997 * 109.47198 * 303.38954 * 4 3 2 30 30 H 1.07997 * 126.12770 * 0.04733 * 9 8 6 31 31 H 1.08001 * 120.08274 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.69818 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.67817 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.09653 * 179.65231 * 14 13 12 35 35 H 0.97000 * 119.99868 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4408 -0.0868 5 8 4.6051 1.4374 -0.1675 6 6 5.2127 2.6320 -0.3174 7 8 4.5583 3.6561 -0.2789 8 6 6.6635 2.6960 -0.5268 9 6 7.3745 3.8276 -0.7900 10 6 8.7362 3.4606 -0.9236 11 6 9.9050 4.1843 -1.1906 12 6 11.1046 3.5356 -1.2611 13 6 11.1778 2.1621 -1.0698 14 6 10.0406 1.4273 -0.8111 15 6 8.8080 2.0665 -0.7295 16 7 7.5276 1.6176 -0.4872 17 6 7.1704 0.3182 -0.2477 18 1 6.4755 0.0866 0.5459 19 6 7.7022 -0.7036 -1.0262 20 7 7.7304 -1.9333 -0.5655 21 14 8.3764 -0.3277 -2.7271 22 1 9.8456 -0.1275 -2.6441 23 1 8.0823 -1.4629 -3.6382 24 1 7.7375 0.9061 -3.2514 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0096 -0.5656 -0.8575 27 1 3.0096 -0.4585 0.9194 28 1 2.8421 1.9910 0.8005 29 1 2.7431 1.9191 -0.9752 30 1 6.9724 4.8259 -0.8795 31 1 9.8576 5.2527 -1.3412 32 1 12.0045 4.0958 -1.4676 33 1 12.1344 1.6643 -1.1284 34 1 10.1069 0.3587 -0.6692 35 1 8.1017 -2.6462 -1.1085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729889783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:51 Heat of formation + Delta-G solvation = 29.853151 kcal Electronic energy + Delta-G solvation = -21379.559081 eV Core-core repulsion = 18116.943564 eV Total energy + Delta-G solvation = -3262.615517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84296 -39.44700 -36.40024 -36.11096 -34.31285 -33.60790 -31.42799 -30.32562 -29.31099 -28.44993 -24.98610 -24.56488 -22.79322 -21.19771 -20.68267 -19.36787 -18.43860 -17.95787 -17.17974 -16.25937 -16.05004 -15.69442 -15.21162 -14.56173 -14.27924 -13.92629 -13.73507 -13.64759 -13.28653 -13.04818 -12.88210 -12.40244 -12.15925 -12.12571 -11.77131 -11.43800 -11.05409 -11.02708 -10.55848 -10.41426 -10.35618 -10.30095 -10.07652 -9.98125 -9.94436 -9.48020 -8.76251 -7.46010 -7.06032 -6.98332 -4.58511 1.40753 2.42224 2.58824 2.64404 2.81179 2.97795 3.07963 3.18815 3.25858 3.84730 3.87169 4.06278 4.43854 4.53973 4.73261 5.13453 5.14403 5.40763 5.49857 5.58043 5.67167 5.82621 5.94446 5.97537 6.01584 6.11593 6.18286 6.33882 6.53339 6.69025 6.77167 6.85125 7.13208 7.20242 7.29498 7.52273 7.55347 7.56072 7.80769 8.09577 8.36010 8.64167 8.95987 10.05757 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.005939 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.577380 B = 4713.675590 C = 5864.886001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C -0.013 4.013 4 C 0.072 3.928 5 O -0.327 6.327 6 C 0.546 3.454 7 O -0.523 6.523 8 C -0.014 4.014 9 C -0.154 4.154 10 C -0.126 4.126 11 C -0.076 4.076 12 C -0.157 4.157 13 C -0.132 4.132 14 C -0.095 4.095 15 C 0.057 3.943 16 N -0.256 5.256 17 C -0.340 4.340 18 H 0.130 0.870 19 C 0.086 3.914 20 N -0.816 5.816 21 Si 0.864 3.136 22 H -0.247 1.247 23 H -0.278 1.278 24 H -0.255 1.255 25 H 0.218 0.782 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 3.082 -1.090 4.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.050 4.050 4 C -0.003 4.003 5 O -0.243 6.243 6 C 0.394 3.606 7 O -0.414 6.414 8 C -0.126 4.126 9 C -0.181 4.181 10 C -0.131 4.131 11 C -0.095 4.095 12 C -0.176 4.176 13 C -0.152 4.152 14 C -0.115 4.115 15 C -0.057 4.057 16 N 0.081 4.919 17 C -0.467 4.467 18 H 0.147 0.853 19 C -0.128 4.128 20 N -0.445 5.445 21 Si 0.688 3.312 22 H -0.172 1.172 23 H -0.204 1.204 24 H -0.178 1.178 25 H 0.235 0.765 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.206 2.732 -0.980 4.325 hybrid contribution -0.138 -0.115 -0.793 0.813 sum -3.344 2.617 -1.773 4.602 Atomic orbital electron populations 1.24853 0.95833 1.00204 1.01814 1.22796 0.94068 1.00785 0.99986 1.18513 0.84302 0.96563 1.05609 1.22779 0.78316 0.96609 1.02596 1.86856 1.21350 1.32931 1.83172 1.19966 0.87114 0.81108 0.72433 1.90805 1.65858 1.35542 1.49186 1.19199 0.86623 0.89734 1.17091 1.20398 0.91392 0.96685 1.09587 1.17923 0.93461 0.92572 1.09139 1.20159 0.91060 0.98350 0.99948 1.20370 0.96931 0.94470 1.05821 1.20597 0.96811 0.94061 1.03764 1.20199 0.89997 0.99554 1.01736 1.18412 0.86043 0.92996 1.08251 1.40396 1.02550 1.05945 1.43046 1.19482 1.30435 0.77759 1.19048 0.85309 1.25450 0.94081 0.94561 0.98757 1.69717 1.36791 1.01079 1.36882 0.86986 0.81606 0.79679 0.82972 1.17151 1.20440 1.17826 0.76492 0.87914 0.88056 0.91162 0.91256 0.84251 0.87040 0.87185 0.86881 0.86323 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.41 19.25 29.55 0.57 -1.84 16 2 C -0.18 -2.37 13.34 -37.12 -0.50 -2.87 16 3 C -0.01 -0.19 6.08 -29.52 -0.18 -0.37 16 4 C 0.07 1.16 5.44 37.16 0.20 1.36 16 5 O -0.33 -6.69 8.18 -40.95 -0.33 -7.03 16 6 C 0.55 12.01 7.90 34.15 0.27 12.28 16 7 O -0.52 -11.62 16.65 -19.34 -0.32 -11.94 16 8 C -0.01 -0.32 6.76 -82.28 -0.56 -0.88 16 9 C -0.15 -3.31 10.55 -39.01 -0.41 -3.72 16 10 C -0.13 -2.72 6.16 -106.89 -0.66 -3.38 16 11 C -0.08 -1.39 10.06 -39.51 -0.40 -1.79 16 12 C -0.16 -2.68 9.97 -39.95 -0.40 -3.08 16 13 C -0.13 -2.43 10.02 -39.50 -0.40 -2.82 16 14 C -0.10 -2.06 7.04 -39.41 -0.28 -2.34 16 15 C 0.06 1.34 5.21 -83.83 -0.44 0.90 16 16 N -0.26 -6.28 2.37 -56.10 -0.13 -6.41 16 17 C -0.34 -8.65 8.93 -15.01 -0.13 -8.78 16 18 H 0.13 3.42 7.34 -52.49 -0.39 3.04 16 19 C 0.09 2.16 4.81 -17.47 -0.08 2.07 16 20 N -0.82 -20.63 13.95 55.50 0.77 -19.86 16 21 Si 0.86 19.75 24.72 -169.99 -4.20 15.55 16 22 H -0.25 -5.38 5.87 56.52 0.33 -5.05 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.25 -6.22 7.11 56.52 0.40 -5.81 16 25 H 0.22 1.62 7.80 -54.08 -0.42 1.20 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 2.62 6.18 -52.49 -0.32 2.30 16 35 H 0.29 6.67 8.31 -40.82 -0.34 6.34 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -28.11 311.89 -6.62 -34.73 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.72 Total: 5.52 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.38 Total: -15.25 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.64 Total: -26.27 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.66 Total: -18.97 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.20 Total: 15.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.11 -6.62 -34.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729889783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.585 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds