Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47557 * 2 1 4 4 N 1.35052 * 126.38014 * 265.02988 * 3 2 1 5 5 H 0.97000 * 124.87975 * 359.97438 * 4 3 2 6 6 N 1.28466 * 110.23893 * 179.97438 * 4 3 2 7 7 C 1.31852 * 110.06711 * 359.97438 * 6 4 3 8 8 C 1.47586 * 126.52638 * 179.97438 * 7 6 4 9 9 O 1.21493 * 120.00179 * 180.02562 * 8 7 6 10 10 O 1.34732 * 119.99737 * 359.74272 * 8 7 6 11 11 C 1.45202 * 116.99693 * 180.27280 * 10 8 7 12 12 C 1.53001 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47502 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99764 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00133 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47315 * 60.00502 * 17 15 13 19 19 H 1.48508 * 109.46903 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47336 * 299.99813 * 17 15 13 21 21 C 1.35348 * 126.38217 * 85.31745 * 3 2 1 22 22 N 1.48019 * 127.24498 * 0.02888 * 21 3 2 23 23 O 1.21799 * 120.00194 * 270.15117 * 22 21 3 24 24 O 1.21801 * 120.00074 * 90.15363 * 22 21 3 25 25 H 1.08999 * 109.46774 * 60.00055 * 1 2 3 26 26 H 1.09000 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46706 * 300.00215 * 1 2 3 28 28 H 1.09007 * 109.47157 * 239.99601 * 2 1 3 29 29 H 1.09004 * 109.47197 * 120.00077 * 2 1 3 30 30 H 1.08998 * 109.47630 * 300.00508 * 11 10 8 31 31 H 1.09004 * 109.46770 * 60.00912 * 11 10 8 32 32 H 1.08998 * 109.47123 * 300.00640 * 12 11 10 33 33 H 1.09002 * 109.47078 * 60.00027 * 12 11 10 34 34 H 0.97002 * 119.99980 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3883 2.1445 -1.0832 5 1 2.3597 1.8241 -1.9983 6 7 2.7700 3.3184 -0.7275 7 6 2.6918 3.4418 0.5829 8 6 3.0411 4.6371 1.3751 9 8 2.9232 4.6204 2.5842 10 8 3.4961 5.7449 0.7579 11 6 3.8258 6.8806 1.6004 12 6 4.3209 8.0361 0.7282 13 6 4.6637 9.2145 1.6027 14 1 4.5411 9.1460 2.6735 15 6 5.1338 10.3800 1.0357 16 7 5.2825 10.4635 -0.2683 17 14 5.5580 11.8410 2.1197 18 1 6.6238 11.4533 3.0783 19 1 6.0386 12.9625 1.2730 20 1 4.3495 12.2687 2.8692 21 6 2.2162 2.2073 1.0860 22 7 1.9684 1.8524 2.5015 23 8 0.8743 2.0539 2.9973 24 8 2.8585 1.3588 3.1705 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9387 7.1950 2.1501 31 1 4.6076 6.5957 2.3046 32 1 5.2080 7.7219 0.1783 33 1 3.5389 8.3208 0.0243 34 1 5.6136 11.2834 -0.6672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790074474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -24.023428 kcal Electronic energy + Delta-G solvation = -21691.542574 eV Core-core repulsion = 18015.741531 eV Total energy + Delta-G solvation = -3675.801044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.87255 -41.87472 -39.95955 -36.53317 -36.35727 -35.26481 -33.41946 -33.07251 -30.81041 -30.19184 -26.96661 -25.90307 -24.58157 -24.14857 -21.81413 -21.18380 -20.56903 -19.22314 -18.85720 -18.10340 -17.54863 -17.02768 -16.74469 -16.46993 -15.97495 -15.83779 -15.08610 -14.59420 -14.44573 -13.49482 -13.25196 -13.02484 -12.48322 -12.36580 -12.12992 -11.77646 -11.69638 -11.34962 -11.28500 -11.13794 -11.13352 -10.93985 -10.79733 -10.59967 -10.46399 -10.09241 -9.73910 -9.72012 -9.35068 -8.45768 -6.11888 -4.16730 0.44482 0.74598 0.77803 1.00623 2.01256 2.64908 2.78842 3.30381 3.34009 3.37341 3.57278 3.71158 3.93852 4.36437 4.40331 4.48741 4.54055 4.80565 5.09578 5.13480 5.21011 5.24757 5.54253 5.93124 5.97920 6.00963 6.18803 6.54743 6.66094 6.85433 7.49232 7.53494 7.58029 7.77687 7.94302 8.20061 8.88370 9.47800 10.99559 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003327 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.880055 B = 8413.086681 C = 9028.435240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.070 4.070 3 C 0.096 3.904 4 N -0.359 5.359 5 H 0.463 0.537 6 N -0.192 5.192 7 C 0.068 3.932 8 C 0.538 3.462 9 O -0.491 6.491 10 O -0.332 6.332 11 C 0.073 3.927 12 C 0.026 3.974 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.102 4.102 22 N 0.057 4.943 23 O -0.123 6.123 24 O -0.125 6.125 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 -23.512 -4.472 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.109 4.109 3 C -0.034 4.034 4 N -0.075 5.075 5 H 0.312 0.688 6 N -0.027 5.027 7 C -0.094 4.094 8 C 0.378 3.622 9 O -0.377 6.377 10 O -0.246 6.246 11 C 0.001 3.999 12 C -0.011 4.011 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.195 4.195 22 N 0.591 4.409 23 O -0.348 6.348 24 O -0.349 6.349 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.097 -22.497 -5.942 24.637 hybrid contribution 0.058 0.304 1.057 1.101 sum -8.039 -22.193 -4.885 24.104 Atomic orbital electron populations 1.21852 0.92224 1.03622 1.03608 1.20498 0.97926 0.86667 1.05799 1.20969 1.00311 0.96732 0.85345 1.43326 1.45830 1.08248 1.10065 0.68847 1.74138 1.14937 1.01071 1.12576 1.20803 1.06131 0.92940 0.89545 1.19324 0.75263 0.82545 0.85040 1.90935 1.49834 1.83094 1.13822 1.86666 1.73419 1.21965 1.42573 1.23892 0.99939 0.82119 0.93932 1.19184 0.97432 0.89140 0.95353 1.20923 1.45072 0.97130 0.93492 0.92166 1.24978 0.95208 0.98769 0.95131 1.69964 1.45387 1.27707 1.09760 0.86507 0.78969 0.81501 0.80183 1.20007 1.21112 1.19998 1.20429 1.18376 0.96715 0.83969 1.42096 1.00261 0.98051 1.00505 1.94569 1.11230 1.55898 1.73060 1.94577 1.38482 1.42555 1.59330 0.91790 0.90435 0.91235 0.88352 0.88309 0.91683 0.91681 0.95181 0.95173 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.07 -0.33 6.49 -27.89 -0.18 -0.51 16 3 C 0.10 0.83 6.48 -82.21 -0.53 0.29 16 4 N -0.36 -2.77 6.83 33.50 0.23 -2.54 16 5 H 0.46 1.27 8.96 -190.44 -1.71 -0.43 16 6 N -0.19 -2.50 12.24 33.41 0.41 -2.09 16 7 C 0.07 1.07 7.17 -82.79 -0.59 0.48 16 8 C 0.54 10.51 7.97 34.54 0.28 10.79 16 9 O -0.49 -10.58 16.26 -19.26 -0.31 -10.89 16 10 O -0.33 -7.01 10.23 -40.58 -0.42 -7.42 16 11 C 0.07 1.66 5.41 37.16 0.20 1.86 16 12 C 0.03 0.69 5.35 -27.89 -0.15 0.54 16 13 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.10 -1.39 6.75 -79.72 -0.54 -1.93 16 22 N 0.06 0.88 3.94 34.07 0.13 1.01 16 23 O -0.12 -1.95 19.25 -29.46 -0.57 -2.51 16 24 O -0.13 -2.01 19.25 -29.46 -0.57 -2.58 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -34.86 320.51 -7.16 -42.02 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -5.05 Total: -8.19 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.56 Total: -2.42 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 1.51 Total: -29.34 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.86 Total: -23.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.86 -7.16 -42.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790074474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.996 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds