Wall clock time and date at job start Tue Mar 31 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39795 * 126.51952 * 2 1 4 4 C 1.35486 * 107.84635 * 179.75872 * 3 2 1 5 5 N 1.34962 * 108.98391 * 0.38697 * 4 3 2 6 6 C 1.46499 * 125.63608 * 179.86527 * 5 4 3 7 7 C 1.37697 * 108.72852 * 359.60790 * 5 4 3 8 8 C 1.46489 * 126.26636 * 180.21349 * 7 5 4 9 9 O 1.21616 * 120.00582 * 179.97438 * 8 7 5 10 10 O 1.34900 * 119.99809 * 0.02562 * 8 7 5 11 11 C 1.45200 * 116.99990 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47085 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47108 * 179.97438 * 12 11 10 14 14 S 1.81005 * 109.47224 * 180.02562 * 13 12 11 15 15 C 1.76197 * 100.00223 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00043 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00029 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99940 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47508 * 89.99876 * 19 17 15 21 21 H 1.48498 * 109.46988 * 210.00022 * 19 17 15 22 22 H 1.48507 * 109.47139 * 329.99548 * 19 17 15 23 23 H 1.08994 * 109.47411 * 270.00363 * 1 2 3 24 24 H 1.09001 * 109.46585 * 30.00966 * 1 2 3 25 25 H 1.09004 * 109.47256 * 150.00262 * 1 2 3 26 26 H 1.08005 * 126.07738 * 359.95837 * 3 2 1 27 27 H 1.08000 * 125.51092 * 180.26611 * 4 3 2 28 28 H 1.09002 * 109.47391 * 269.69740 * 6 5 4 29 29 H 1.09001 * 109.46813 * 149.69796 * 6 5 4 30 30 H 1.09004 * 109.47041 * 29.69923 * 6 5 4 31 31 H 1.08997 * 109.47057 * 300.00188 * 11 10 8 32 32 H 1.08995 * 109.46984 * 59.99960 * 11 10 8 33 33 H 1.09001 * 109.47317 * 300.00597 * 12 11 10 34 34 H 1.09010 * 109.46574 * 59.99981 * 12 11 10 35 35 H 1.08998 * 109.47445 * 299.99959 * 13 12 11 36 36 H 1.08996 * 109.47475 * 60.00460 * 13 12 11 37 37 H 0.96995 * 119.99995 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6224 0.6897 0.0054 5 7 3.6298 -0.6599 0.0002 6 6 4.8250 -1.5070 0.0008 7 6 2.3281 -1.1091 0.0002 8 6 1.8943 -2.5083 -0.0003 9 8 0.7083 -2.7773 0.0002 10 8 2.8105 -3.4985 -0.0001 11 6 2.3085 -4.8610 0.0000 12 6 3.4858 -5.8382 -0.0005 13 6 2.9569 -7.2738 0.0003 14 16 4.3497 -8.4299 0.0004 15 6 3.4769 -9.9605 0.0005 16 1 2.3969 -9.9663 0.0009 17 6 4.1773 -11.1588 0.0012 18 7 3.5252 -12.3022 0.0018 19 14 6.0452 -11.1488 0.0027 20 1 6.5392 -11.1460 1.4031 21 1 6.5472 -12.3587 -0.6968 22 1 6.5343 -9.9337 -0.6972 23 1 -0.3634 0.0001 1.0276 24 1 -0.3632 0.8899 -0.5140 25 1 -0.3634 -0.8900 -0.5138 26 1 2.0158 2.1541 -0.0006 27 1 4.4982 1.3217 0.0109 28 1 5.1217 -1.7175 -1.0268 29 1 4.6067 -2.4430 0.5150 30 1 5.6360 -0.9907 0.5145 31 1 1.7008 -5.0242 0.8899 32 1 1.7008 -5.0243 -0.8899 33 1 4.0933 -5.6748 -0.8907 34 1 4.0939 -5.6748 0.8893 35 1 2.3498 -7.4369 0.8907 36 1 2.3486 -7.4374 -0.8893 37 1 4.0147 -13.1396 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805533892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:13 Heat of formation + Delta-G solvation = -56.235009 kcal Electronic energy + Delta-G solvation = -19096.632570 eV Core-core repulsion = 15965.727942 eV Total energy + Delta-G solvation = -3130.904628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76795 -39.94386 -36.76637 -34.01416 -33.52155 -32.48589 -30.63769 -28.75778 -26.70202 -25.70682 -25.40313 -23.07068 -21.49360 -20.71130 -19.51669 -17.93016 -17.43948 -16.84416 -16.78404 -15.66747 -15.61260 -15.03824 -14.58734 -14.47149 -13.93463 -13.73074 -13.47905 -13.17029 -12.94126 -12.81451 -12.74652 -12.52810 -12.23827 -12.19620 -11.88645 -11.55320 -11.26131 -11.12797 -11.01749 -10.67071 -10.40945 -10.27195 -9.85881 -9.05621 -8.85573 -8.65697 -8.51141 -7.01982 -6.32765 -4.06493 1.04031 2.37493 2.40522 2.58090 2.95184 2.99352 3.26064 3.40375 3.52508 4.26591 4.46052 4.50938 4.67561 4.75115 4.93314 4.99308 5.00278 5.05051 5.06200 5.10886 5.33446 5.36776 5.48151 5.62744 5.63676 5.64990 5.74001 5.89394 5.96446 6.12089 6.27900 6.34498 6.45453 6.51626 6.71305 6.89557 7.68162 7.90896 8.40432 9.12422 10.76693 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.038443 B = 0.002837 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.171668 B = 9867.499488 C =10559.317503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.067 4.067 3 C -0.217 4.217 4 C 0.032 3.968 5 N -0.417 5.417 6 C 0.063 3.937 7 C -0.051 4.051 8 C 0.535 3.465 9 O -0.499 6.499 10 O -0.361 6.361 11 C 0.073 3.927 12 C -0.100 4.100 13 C -0.084 4.084 14 S -0.207 6.207 15 C -0.505 4.505 16 H 0.089 0.911 17 C 0.092 3.908 18 N -0.880 5.880 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.238 1.238 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 26.930 -0.020 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.241 4.241 4 C -0.105 4.105 5 N -0.091 5.091 6 C -0.078 4.078 7 C -0.161 4.161 8 C 0.381 3.619 9 O -0.387 6.387 10 O -0.279 6.279 11 C -0.001 4.001 12 C -0.139 4.139 13 C -0.233 4.233 14 S 0.021 5.979 15 C -0.652 4.652 16 H 0.107 0.893 17 C -0.116 4.116 18 N -0.516 5.516 19 Si 0.687 3.313 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.162 1.162 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.163 0.837 27 H 0.188 0.812 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.364 26.476 -0.026 26.581 hybrid contribution -0.503 -0.657 0.027 0.828 sum 1.861 25.819 0.001 25.886 Atomic orbital electron populations 1.20383 0.89053 1.03076 1.02434 1.19989 0.95870 0.90494 1.01163 1.20767 0.91606 0.98717 1.12966 1.21954 0.99679 0.82785 1.06085 1.43902 1.05853 1.06451 1.52902 1.22365 0.84970 0.96121 1.04365 1.19265 0.83972 0.90405 1.22412 1.19739 0.84268 0.84486 0.73429 1.90873 1.17411 1.83793 1.46614 1.86547 1.39798 1.17142 1.84381 1.23237 0.97641 0.76257 1.03014 1.21329 0.96627 0.91709 1.04197 1.22943 1.01260 0.94751 1.04318 1.84134 1.13191 1.03034 1.97568 1.22114 0.95854 0.88565 1.58683 0.89273 1.24796 0.99166 0.94383 0.93303 1.69933 1.36332 0.97374 1.48011 0.86670 0.85166 0.79771 0.79725 1.19328 1.20024 1.16179 0.91264 0.91657 0.90225 0.83662 0.81151 0.90121 0.87882 0.89487 0.90862 0.90861 0.90334 0.90381 0.90960 0.90914 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.83 36.00 0.35 -0.58 16 2 C -0.07 -0.76 6.22 -104.13 -0.65 -1.40 16 3 C -0.22 -1.92 10.76 -39.98 -0.43 -2.35 16 4 C 0.03 0.25 11.34 -17.16 -0.19 0.06 16 5 N -0.42 -4.05 3.15 -120.40 -0.38 -4.43 16 6 C 0.06 0.45 10.56 59.85 0.63 1.09 16 7 C -0.05 -0.63 6.89 -81.99 -0.56 -1.20 16 8 C 0.54 7.54 7.92 34.05 0.27 7.81 16 9 O -0.50 -8.03 14.61 -19.35 -0.28 -8.31 16 10 O -0.36 -4.79 7.65 -41.04 -0.31 -5.10 16 11 C 0.07 1.00 5.48 37.16 0.20 1.21 16 12 C -0.10 -1.47 5.60 -26.74 -0.15 -1.62 16 13 C -0.08 -1.58 5.67 37.15 0.21 -1.37 16 14 S -0.21 -4.92 19.41 -107.50 -2.09 -7.00 16 15 C -0.50 -14.47 10.04 30.94 0.31 -14.16 16 16 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 17 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 18 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 19 Si 0.86 21.20 27.74 -169.99 -4.72 16.48 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 26 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.88 6.15 -51.93 -0.32 0.56 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 36 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -32.87 329.79 -7.44 -40.31 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.31 Total: -1.22 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.10 Total: -9.95 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.40 Total: -30.18 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.60 Total: -13.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.48 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.09 Total: -7.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.87 -7.44 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805533892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.922 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds