Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33644 * 126.03938 * 2 1 4 4 N 1.31771 * 114.50041 * 180.02562 * 3 2 1 5 5 C 1.29028 * 117.12878 * 359.97438 * 4 3 2 6 6 C 1.50701 * 124.91855 * 180.02562 * 5 4 3 7 7 O 1.45205 * 109.47081 * 89.99998 * 6 5 4 8 8 C 1.34223 * 117.00063 * 179.97438 * 7 6 5 9 9 O 1.20828 * 119.99788 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00260 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.46986 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46871 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47268 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46942 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99743 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00053 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99891 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47470 * 89.99890 * 18 16 14 20 20 H 1.48500 * 109.46693 * 210.00070 * 18 16 14 21 21 H 1.48498 * 109.47100 * 329.99301 * 18 16 14 22 22 S 1.70979 * 110.16576 * 359.97438 * 5 4 3 23 23 H 1.09001 * 109.47050 * 90.00187 * 1 2 3 24 24 H 1.08996 * 109.47247 * 210.00530 * 1 2 3 25 25 H 1.09005 * 109.47214 * 330.00706 * 1 2 3 26 26 H 1.08002 * 122.74545 * 359.72316 * 3 2 1 27 27 H 1.08998 * 109.46948 * 209.99747 * 6 5 4 28 28 H 1.09001 * 109.47109 * 330.00084 * 6 5 4 29 29 H 1.09001 * 109.46857 * 300.00682 * 10 8 7 30 30 H 1.09004 * 109.46676 * 60.00543 * 10 8 7 31 31 H 1.09008 * 109.47279 * 299.99608 * 11 10 8 32 32 H 1.08996 * 109.47792 * 60.00210 * 11 10 8 33 33 H 1.08996 * 109.46812 * 299.99681 * 12 11 10 34 34 H 1.08995 * 109.47368 * 59.99822 * 12 11 10 35 35 H 1.09000 * 109.46980 * 300.00138 * 13 12 11 36 36 H 1.09004 * 109.46982 * 59.99970 * 13 12 11 37 37 H 0.97003 * 120.00155 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 8 5.8099 -1.0847 1.3685 8 6 7.0654 -1.5256 1.5444 9 8 7.7599 -1.7692 0.5862 10 6 7.6092 -1.7157 2.9370 11 6 9.0509 -2.2215 2.8569 12 6 9.6028 -2.4151 4.2707 13 6 11.0443 -2.9215 4.1907 14 6 11.5880 -3.1116 5.5833 15 1 10.9676 -2.8926 6.4397 16 6 12.8775 -3.5650 5.7640 17 7 13.3522 -3.7304 6.9792 18 14 13.9508 -3.9431 4.2825 19 1 14.6997 -2.7226 3.8893 20 1 14.9101 -5.0224 4.6289 21 1 13.0957 -4.3850 3.1517 22 16 2.5436 -1.4248 0.0010 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8901 0.5137 26 1 1.9025 2.0875 -0.0044 27 1 5.4014 -1.8846 -0.5142 28 1 5.9906 -0.2050 -0.5144 29 1 7.5872 -0.7643 3.4686 30 1 6.9974 -2.4438 3.4697 31 1 9.0732 -3.1728 2.3252 32 1 9.6625 -1.4932 2.3244 33 1 9.5805 -1.4640 4.8028 34 1 8.9912 -3.1436 4.8029 35 1 11.0662 -3.8727 3.6587 36 1 11.6562 -2.1933 3.6583 37 1 14.2593 -4.0497 7.1063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -65.061209 kcal Electronic energy + Delta-G solvation = -18447.896542 eV Core-core repulsion = 15316.609181 eV Total energy + Delta-G solvation = -3131.287361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69663 -40.02187 -36.91033 -35.12851 -33.46793 -32.64456 -30.67043 -29.78975 -26.57050 -25.74918 -23.97584 -22.54169 -20.56551 -20.09482 -19.94490 -18.62946 -17.72020 -16.71351 -16.60022 -16.51653 -15.45184 -15.09763 -14.99276 -14.23282 -14.12420 -13.87378 -13.52885 -13.35266 -13.10030 -12.80765 -12.53526 -12.42553 -12.20179 -11.78627 -11.66231 -11.17243 -11.00801 -10.81052 -10.61600 -10.59328 -10.08234 -9.88510 -9.68772 -9.67739 -9.56451 -9.29437 -9.14077 -8.50334 -6.01215 -3.98957 0.09560 0.81431 1.25278 2.13749 2.15668 2.77022 3.34566 3.41683 3.46827 3.65586 4.38677 4.44941 4.49044 4.62630 4.68388 4.83589 4.94731 5.01241 5.15251 5.18427 5.21998 5.33379 5.35747 5.62581 5.69265 5.93890 6.03009 6.21312 6.32720 6.60529 6.74336 6.94737 7.25897 7.34896 7.47605 7.65926 7.83382 8.57166 9.03775 9.61803 11.12200 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.050400 B = 0.002247 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.423672 B =12456.728431 C =12662.968799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.218 4.218 3 C 0.031 3.969 4 N -0.449 5.449 5 C 0.030 3.970 6 C 0.145 3.855 7 O -0.355 6.355 8 C 0.464 3.536 9 O -0.503 6.503 10 C -0.110 4.110 11 C -0.111 4.111 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 S 0.155 5.845 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.179 0.821 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.729 6.863 -16.382 32.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.339 4.339 3 C -0.121 4.121 4 N -0.164 5.164 5 C -0.247 4.247 6 C 0.068 3.932 7 O -0.272 6.272 8 C 0.307 3.693 9 O -0.390 6.390 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 S 0.409 5.591 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.196 0.804 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.078 6.045 -16.600 32.331 hybrid contribution 0.369 0.746 -0.801 1.155 sum -26.709 6.791 -17.401 32.592 Atomic orbital electron populations 1.20280 0.86393 1.03791 1.03190 1.26194 1.02002 0.95242 1.10498 1.21740 0.86571 1.00344 1.03433 1.66206 1.18106 1.18611 1.13483 1.26342 0.99782 0.91800 1.06740 1.21137 0.87494 1.02155 0.82443 1.86579 1.32331 1.78126 1.30116 1.24265 0.78613 0.72652 0.93733 1.90682 1.58371 1.46750 1.43198 1.21614 0.98847 1.05061 0.89279 1.21622 0.91531 1.01799 0.99959 1.21477 0.98510 1.00971 0.93045 1.19580 0.92013 0.95894 0.97790 1.21169 0.98655 1.44182 0.91804 0.91042 1.25048 0.97916 0.95026 0.95649 1.69918 1.16663 1.47085 1.20746 0.86770 0.80467 0.78276 0.83751 1.20312 1.21450 1.18937 1.84044 0.97820 1.10545 1.66642 0.90256 0.90808 0.89899 0.80448 0.88808 0.88045 0.87533 0.87565 0.91460 0.91443 0.92550 0.92534 0.96559 0.96996 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.42 36.01 0.38 0.08 16 2 C -0.22 -1.55 6.60 -35.92 -0.24 -1.79 16 3 C 0.03 0.26 11.25 -19.19 -0.22 0.05 16 4 N -0.45 -5.05 10.54 -11.86 -0.13 -5.17 16 5 C 0.03 0.31 7.03 -13.46 -0.09 0.22 16 6 C 0.14 1.55 6.04 36.01 0.22 1.77 16 7 O -0.35 -4.41 10.20 -39.24 -0.40 -4.81 16 8 C 0.46 6.30 7.96 36.01 0.29 6.58 16 9 O -0.50 -8.12 15.73 -18.75 -0.29 -8.41 16 10 C -0.11 -1.39 5.81 -27.88 -0.16 -1.55 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 13 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 14 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 22 S 0.16 1.23 23.18 -107.50 -2.49 -1.26 16 23 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 29 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.11 8.10 -51.92 -0.42 0.69 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -34.04 334.35 -8.22 -42.26 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -5.42 Total: -5.04 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.63 Total: -12.65 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.65 Total: -32.65 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.70 Total: -13.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.04 -8.22 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.797 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds