Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33623 * 116.99327 * 2 1 4 4 C 1.46498 * 119.61569 * 1.34822 * 3 2 1 5 5 O 1.21719 * 120.00296 * 330.05444 * 4 3 2 6 6 N 1.34776 * 119.99903 * 149.77233 * 4 3 2 7 7 C 1.46501 * 120.00174 * 174.99515 * 6 4 3 8 8 C 1.53003 * 109.47267 * 185.05090 * 7 6 4 9 9 C 1.50692 * 115.55088 * 55.31723 * 8 7 6 10 10 H 1.07999 * 120.00259 * 273.85965 * 9 8 7 11 11 C 1.37880 * 119.99985 * 93.85596 * 9 8 7 12 12 N 1.31513 * 120.00216 * 4.66676 * 11 9 8 13 13 Si 1.86803 * 119.99789 * 184.66278 * 11 9 8 14 14 H 1.48500 * 109.46747 * 90.00618 * 13 11 9 15 15 H 1.48503 * 109.47058 * 209.99905 * 13 11 9 16 16 H 1.48494 * 109.47625 * 330.00624 * 13 11 9 17 17 C 1.52995 * 117.49520 * 269.64310 * 8 7 6 18 18 C 1.53005 * 117.49538 * 200.98563 * 8 7 6 19 19 S 1.76547 * 120.76939 * 181.62766 * 3 2 1 20 20 C 1.82251 * 101.50948 * 345.54727 * 19 3 2 21 21 C 1.53755 * 107.10449 * 44.01905 * 20 19 3 22 22 O 1.33565 * 116.99982 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46911 * 84.29748 * 1 2 3 24 24 H 1.09009 * 109.46931 * 204.29454 * 1 2 3 25 25 H 1.08997 * 109.47554 * 324.29546 * 1 2 3 26 26 H 0.97002 * 120.00553 * 355.00347 * 6 4 3 27 27 H 1.09005 * 109.47401 * 305.05083 * 7 6 4 28 28 H 1.08997 * 109.46989 * 65.04939 * 7 6 4 29 29 H 0.96991 * 120.00034 * 185.00062 * 12 11 9 30 30 H 1.08997 * 117.50340 * 0.02562 * 17 8 7 31 31 H 1.09007 * 117.49574 * 145.01982 * 17 8 7 32 32 H 1.08996 * 117.49847 * 214.97383 * 18 8 7 33 33 H 1.08999 * 117.50221 * 359.97438 * 18 8 7 34 34 H 1.09000 * 110.11486 * 284.54585 * 20 19 3 35 35 H 1.09006 * 109.82401 * 163.32812 * 20 19 3 36 36 H 1.08994 * 109.54491 * 174.65636 * 21 20 19 37 37 H 1.08997 * 109.54629 * 54.38821 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1135 1.1907 0.0000 4 6 1.3076 2.4137 0.0300 5 8 0.1992 2.4247 -0.4730 6 7 1.7911 3.5250 0.6195 7 6 1.0338 4.7774 0.5543 8 6 1.8545 5.9032 1.1868 9 6 3.2318 6.1064 0.6103 10 1 4.0643 5.5288 0.9841 11 6 3.4293 7.0296 -0.3946 12 7 2.4361 7.7974 -0.7867 13 14 5.1075 7.1897 -1.1992 14 1 5.1869 6.2734 -2.3651 15 1 5.3064 8.5890 -1.6550 16 1 6.1633 6.8341 -0.2173 17 6 1.6713 6.1552 2.6847 18 6 1.0992 7.1445 1.6663 19 16 3.8746 1.3072 -0.0431 20 6 4.3622 -0.4000 0.3684 21 6 3.4567 -1.3379 -0.4467 22 8 2.1134 -1.1901 -0.0005 23 1 -0.3633 0.1021 -1.0226 24 1 -0.3633 -0.9367 0.4228 25 1 -0.3634 0.8345 0.5997 26 1 2.6406 3.4958 1.0868 27 1 0.8241 5.0216 -0.4871 28 1 0.0953 4.6631 1.0967 29 1 2.5540 8.3953 -1.5412 30 1 0.9666 5.5187 3.2197 31 1 2.5472 6.4682 3.2532 32 1 1.5988 8.1079 1.5652 33 1 0.0177 7.1592 1.5308 34 1 4.2229 -0.5831 1.4339 35 1 5.4052 -0.5623 0.0964 36 1 3.7771 -2.3697 -0.3031 37 1 3.5204 -1.0787 -1.5035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807460121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -31.275147 kcal Electronic energy + Delta-G solvation = -20346.877209 eV Core-core repulsion = 17217.054921 eV Total energy + Delta-G solvation = -3129.822287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24775 -38.92840 -36.69402 -33.49874 -33.12036 -31.88820 -31.45805 -28.21326 -26.12842 -25.21071 -24.38254 -21.35114 -20.93493 -19.71792 -19.21197 -17.90417 -17.30601 -16.33189 -16.06083 -15.47661 -15.02549 -14.90185 -14.58431 -14.09030 -13.92712 -13.59876 -13.23977 -12.84065 -12.70111 -12.53502 -12.20618 -12.07650 -11.70697 -11.43958 -11.30156 -10.97642 -10.85453 -10.50550 -10.16504 -10.13143 -9.64361 -9.49308 -9.27243 -9.06624 -8.39392 -8.26849 -8.02192 -7.29070 -6.04259 -4.13215 1.28693 1.62623 2.32478 2.82810 3.29807 3.36762 3.38728 3.56913 3.94197 4.21013 4.39902 4.65210 4.79220 5.02440 5.21551 5.22077 5.31201 5.35006 5.45944 5.61164 5.71959 5.80443 6.08138 6.28896 6.37211 6.50907 6.54878 6.76004 6.86649 7.17587 7.25562 7.29436 7.41385 7.66098 7.84450 8.30546 8.37606 8.83924 8.88432 9.53720 11.02654 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.005584 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.962076 B = 5013.204276 C = 5895.354250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.156 3.844 3 C -0.288 4.288 4 C 0.576 3.424 5 O -0.552 6.552 6 N -0.688 5.688 7 C 0.164 3.836 8 C 0.016 3.984 9 C -0.494 4.494 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.876 5.876 13 Si 0.887 3.113 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.214 4.214 18 C -0.133 4.133 19 S -0.091 6.091 20 C -0.157 4.157 21 C 0.058 3.942 22 O -0.308 6.308 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.405 0.595 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -16.788 2.406 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 C -0.404 4.404 4 C 0.362 3.638 5 O -0.434 6.434 6 N -0.337 5.337 7 C 0.041 3.959 8 C 0.015 3.985 9 C -0.532 4.532 10 H 0.078 0.922 11 C -0.130 4.130 12 N -0.513 5.513 13 Si 0.714 3.286 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.251 4.251 18 C -0.171 4.171 19 S 0.148 5.852 20 C -0.306 4.306 21 C -0.019 4.019 22 O -0.219 6.219 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.241 0.759 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.606 -15.727 1.794 15.910 hybrid contribution 0.907 -0.690 -0.174 1.153 sum 2.513 -16.417 1.620 16.687 Atomic orbital electron populations 1.21140 0.86380 1.03356 1.04993 1.20779 0.94872 0.82965 0.91732 1.22828 0.97227 0.96773 1.23602 1.16973 0.85304 0.82505 0.79042 1.90760 1.20121 1.84269 1.48283 1.45835 1.25070 1.09140 1.53624 1.21028 0.92061 0.81802 1.01054 1.19068 0.96117 0.93164 0.90106 1.20325 0.91661 1.21074 1.20094 0.92198 1.24960 0.96648 0.94442 0.96905 1.70008 1.31657 1.23801 1.25799 0.86675 0.84686 0.77246 0.79985 1.20539 1.21276 1.19766 1.23102 1.02194 1.05587 0.94265 1.22432 0.96775 0.95998 1.01916 1.86251 0.98453 1.12323 1.88211 1.24494 1.04514 0.96907 1.04643 1.23168 0.79253 1.01208 0.98237 1.85132 1.28774 1.28764 1.79273 0.88893 0.91720 0.88066 0.75917 0.91560 0.94238 0.92961 0.91867 0.90405 0.88831 0.91998 0.88042 0.85685 0.85987 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 8.50 36.01 0.31 -1.06 16 2 C 0.16 2.26 6.68 -35.92 -0.24 2.02 16 3 C -0.29 -4.81 6.07 -37.87 -0.23 -5.04 16 4 C 0.58 11.49 6.93 -12.93 -0.09 11.40 16 5 O -0.55 -11.97 13.74 5.17 0.07 -11.89 16 6 N -0.69 -14.31 5.25 -61.67 -0.32 -14.63 16 7 C 0.16 3.75 5.57 -4.04 -0.02 3.73 16 8 C 0.02 0.39 1.74 -155.66 -0.27 0.12 16 9 C -0.49 -12.99 8.31 -34.44 -0.29 -13.28 16 10 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 11 C 0.07 2.00 5.41 -17.82 -0.10 1.90 16 12 N -0.88 -24.56 11.87 55.43 0.66 -23.90 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.21 -4.61 9.93 -26.70 -0.27 -4.87 16 18 C -0.13 -3.12 8.88 -26.69 -0.24 -3.36 16 19 S -0.09 -1.37 21.48 -107.50 -2.31 -3.67 16 20 C -0.16 -1.51 6.80 37.55 0.26 -1.25 16 21 C 0.06 0.52 6.92 37.55 0.26 0.78 16 22 O -0.31 -3.73 9.88 -12.83 -0.13 -3.86 16 23 H 0.09 1.28 7.97 -51.93 -0.41 0.87 16 24 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.10 1.56 5.99 -51.93 -0.31 1.24 16 26 H 0.41 8.18 7.40 -40.82 -0.30 7.88 16 27 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.09 2.38 7.60 -51.93 -0.39 1.99 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -29.98 321.27 -8.32 -38.30 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.19 Total: 7.70 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.92 Total: -8.91 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.33 Total: -38.53 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.06 Total: -15.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.31 Total: -3.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.98 -8.32 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807460121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.028 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds