Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21718 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.46546 * 119.99894 * 180.02562 * 15 14 13 18 18 C 1.36745 * 125.42363 * 180.02562 * 17 15 14 19 19 C 1.37726 * 113.25305 * 180.02562 * 18 17 15 20 20 O 1.36215 * 122.49792 * 179.97438 * 19 18 17 21 21 C 1.34082 * 115.00112 * 359.97438 * 19 18 17 22 22 S 1.70601 * 110.97404 * 359.72457 * 21 19 18 23 23 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 24 24 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 25 25 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 28 28 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 29 29 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 31 31 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 34 34 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 35 35 H 1.07996 * 123.36943 * 0.03936 * 18 17 15 36 36 H 0.96701 * 114.00156 * 89.99465 * 20 19 18 37 37 H 1.08002 * 124.50722 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5764 -1.4807 3.7814 17 6 1.3877 0.1995 4.8661 18 6 1.6487 -0.1696 6.1566 19 6 1.0621 0.6580 7.0881 20 8 1.1989 0.4633 8.4293 21 6 0.3463 1.6697 6.5763 22 16 0.3787 1.6392 4.8709 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 -0.7209 -1.2493 30 1 1.6767 -1.7489 -1.2491 31 1 2.8610 -1.8832 -4.7335 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2494 34 1 0.9936 0.7580 2.3564 35 1 2.2543 -1.0244 6.4190 36 1 1.9594 0.9174 8.8172 37 1 -0.1767 2.4086 7.1654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807846847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -62.944915 kcal Electronic energy + Delta-G solvation = -19602.439941 eV Core-core repulsion = 16471.244349 eV Total energy + Delta-G solvation = -3131.195592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95759 -39.15242 -37.16920 -35.34351 -33.71388 -32.14998 -29.83366 -27.22371 -26.58685 -26.55484 -24.72765 -22.91388 -21.30965 -19.99773 -18.96754 -18.03179 -17.53276 -16.48837 -16.16774 -15.81716 -15.35062 -15.04498 -14.53264 -13.86851 -13.80025 -13.71728 -13.38993 -13.10740 -12.80178 -12.62308 -12.13903 -12.08448 -11.57103 -11.20223 -11.09989 -11.04285 -10.87579 -10.66979 -10.45087 -10.28562 -10.08877 -9.92092 -9.23552 -9.23087 -8.95916 -8.86488 -8.68454 -8.37779 -6.01825 -4.03256 0.19663 1.12193 1.50810 1.95481 3.16433 3.20939 3.29707 3.36991 3.38654 4.06920 4.43588 4.61737 4.85487 5.02642 5.33707 5.38702 5.49817 5.57200 5.69349 5.77702 5.88257 6.11760 6.16847 6.23053 6.33837 6.44702 6.59112 6.68058 7.01230 7.03548 7.07835 7.21298 7.55725 7.61838 7.73338 7.96554 8.21370 8.38371 9.01414 9.59998 11.09633 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.042979 B = 0.003248 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.322331 B = 8619.225196 C = 9071.624509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.582 3.418 16 O -0.530 6.530 17 C -0.246 4.246 18 C -0.084 4.084 19 C 0.080 3.920 20 O -0.483 6.483 21 C -0.275 4.275 22 S 0.237 5.763 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.160 0.840 36 H 0.389 0.611 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 8.723 19.927 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.367 3.633 16 O -0.408 6.408 17 C -0.367 4.367 18 C -0.117 4.117 19 C 0.023 3.977 20 O -0.292 6.292 21 C -0.413 4.413 22 S 0.503 5.497 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.177 0.823 36 H 0.244 0.756 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.689 8.468 18.652 21.014 hybrid contribution 0.429 0.228 0.433 0.651 sum -4.260 8.695 19.085 21.401 Atomic orbital electron populations 1.21780 0.95191 1.01316 1.00283 1.20934 0.95570 0.95923 0.94980 1.21777 1.00663 0.95832 1.00275 1.19087 0.96405 0.95252 0.89356 1.21175 1.31257 1.12096 0.90485 0.92226 1.25015 0.95317 0.95052 0.99097 1.69964 1.36924 1.22980 1.23481 0.86644 0.79182 0.79413 0.83050 1.20772 1.21338 1.19929 1.21736 0.99188 0.96155 0.82388 1.46099 1.52943 1.31789 1.05725 1.16909 0.80566 0.83832 0.82040 1.90845 1.37968 1.25623 1.86381 1.24604 1.10256 1.03885 0.97968 1.20903 0.99559 1.00917 0.90361 1.17020 1.00869 0.95153 0.84689 1.84951 1.52418 1.74900 1.16924 1.25496 1.09481 1.05206 1.01127 1.83113 1.45122 1.22198 0.99282 0.95356 0.91232 0.93206 0.93215 0.91241 0.95364 0.96262 0.96249 0.93012 0.91343 0.91337 0.76856 0.82256 0.75617 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.36 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 14 N -0.71 -10.54 4.95 -61.65 -0.31 -10.85 16 15 C 0.58 9.04 7.78 -12.91 -0.10 8.94 16 16 O -0.53 -10.13 16.84 5.17 0.09 -10.04 16 17 C -0.25 -3.05 6.45 -36.77 -0.24 -3.29 16 18 C -0.08 -0.98 10.00 -40.31 -0.40 -1.38 16 19 C 0.08 0.80 6.68 -41.23 -0.28 0.52 16 20 O -0.48 -4.18 13.62 -20.43 -0.28 -4.46 16 21 C -0.27 -2.35 10.89 29.27 0.32 -2.03 16 22 S 0.24 2.13 22.15 -107.50 -2.38 -0.25 16 23 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 24 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.40 5.00 5.27 -40.82 -0.22 4.78 16 35 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.39 1.44 9.07 45.56 0.41 1.85 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -31.92 322.10 -7.00 -38.91 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.02 Total: 3.00 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.67 Total: -11.68 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.43 Total: -36.27 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.19 Total: -14.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.38 Total: -0.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.92 -7.00 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807846847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.030 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds