Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.52999 * 109.46853 * 240.00160 * 2 1 3 5 5 C 1.50701 * 109.47172 * 60.00409 * 4 2 1 6 6 H 1.07995 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31523 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47171 * 89.99636 * 9 7 5 11 11 H 1.48492 * 109.47190 * 209.99867 * 9 7 5 12 12 H 1.48495 * 109.47067 * 330.00151 * 9 7 5 13 13 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 14 14 O 1.45202 * 109.46919 * 300.00395 * 13 2 1 15 15 C 1.34230 * 116.99836 * 180.02562 * 14 13 2 16 16 O 1.20833 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00262 * 180.27336 * 15 14 13 18 18 C 1.50693 * 109.47486 * 179.72204 * 17 15 14 19 19 C 1.33642 * 126.04087 * 89.99652 * 18 17 15 20 20 N 1.31779 * 114.50174 * 179.97438 * 19 18 17 21 21 C 1.29029 * 117.12665 * 0.02562 * 20 19 18 22 22 S 1.70979 * 110.16427 * 359.71885 * 21 20 19 23 23 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 25 25 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 28 28 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 29 29 H 1.09006 * 109.46823 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47249 * 300.00051 * 4 2 1 31 31 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47242 * 179.97438 * 13 2 1 33 33 H 1.09004 * 109.46797 * 59.99640 * 13 2 1 34 34 H 1.09004 * 109.46801 * 299.72165 * 17 15 14 35 35 H 1.09000 * 109.47461 * 59.71633 * 17 15 14 36 36 H 1.07999 * 122.74776 * 0.02562 * 19 18 17 37 37 H 1.07993 * 124.92003 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6281 -1.5503 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 2.2255 1.4413 -5.6613 11 1 1.0838 -0.5804 -6.3615 12 1 -0.0605 1.0354 -4.9614 13 6 2.0400 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9170 -0.5466 3.6228 16 8 2.6142 -1.5324 3.6705 17 6 1.4475 0.1065 4.8971 18 6 1.9823 -0.6583 6.0803 19 6 3.1433 -0.4330 6.7026 20 7 3.3862 -1.2403 7.7154 21 6 2.4948 -2.1344 7.9820 22 16 1.1838 -2.0028 6.8923 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -1.7488 -1.2493 31 1 2.8630 -1.8812 -4.7337 32 1 3.1300 -0.7216 1.2489 33 1 1.6766 -1.7489 1.2491 34 1 1.8107 1.1336 4.9341 35 1 0.3579 0.1053 4.9260 36 1 3.8262 0.3472 6.4006 37 1 2.5647 -2.8581 8.7804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842348596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = -60.064894 kcal Electronic energy + Delta-G solvation = -19569.558910 eV Core-core repulsion = 16438.488205 eV Total energy + Delta-G solvation = -3131.070704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48191 -39.67292 -37.28742 -35.43843 -33.19386 -32.34354 -28.52410 -27.22645 -26.44063 -26.36802 -24.88385 -23.04341 -21.17611 -20.20909 -18.47507 -18.13724 -17.57777 -16.48366 -16.35424 -15.98319 -15.49157 -14.59078 -14.42519 -14.25923 -13.97485 -13.50965 -13.41153 -13.02047 -12.87842 -12.33260 -12.24790 -12.07863 -11.50477 -11.28892 -10.99147 -10.85558 -10.62998 -10.56581 -10.34558 -10.33272 -10.23051 -9.92447 -9.76947 -9.56275 -9.27191 -9.17097 -8.96875 -8.38705 -6.02860 -4.04205 0.39106 1.07966 1.47039 2.27251 2.50859 2.98119 3.30000 3.36921 3.39254 4.04497 4.35215 4.43148 4.71011 4.92986 4.98558 5.12645 5.32716 5.40098 5.46291 5.48180 5.78535 5.85984 6.01185 6.15853 6.34309 6.47631 6.59445 6.67944 6.77328 7.08201 7.08483 7.10825 7.42412 7.58276 7.69888 7.87333 7.95679 8.37176 9.00186 9.59037 11.08803 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.047377 B = 0.002921 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.857235 B = 9582.676271 C = 9672.809962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.080 3.920 14 O -0.349 6.349 15 C 0.454 3.546 16 O -0.503 6.503 17 C -0.036 4.036 18 C -0.210 4.210 19 C 0.050 3.950 20 N -0.471 5.471 21 C 0.017 3.983 22 S 0.139 5.861 23 H 0.039 0.961 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.176 0.824 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 2.614 21.625 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 O -0.265 6.265 15 C 0.296 3.704 16 O -0.391 6.391 17 C -0.076 4.076 18 C -0.332 4.332 19 C -0.102 4.102 20 N -0.184 5.184 21 C -0.280 4.280 22 S 0.392 5.608 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.193 0.807 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.418 1.643 21.714 22.219 hybrid contribution 0.534 0.741 -1.230 1.532 sum -3.885 2.384 20.483 20.984 Atomic orbital electron populations 1.21716 0.94804 1.00930 1.00856 1.20820 0.96168 0.96231 0.92671 1.21717 1.00033 0.95704 1.00855 1.19128 0.96383 0.95292 0.89435 1.21148 1.31256 1.12142 0.90282 0.92058 1.25020 0.95293 0.95068 0.99140 1.69966 1.36933 1.23057 1.23528 0.86611 0.79241 0.79389 0.82877 1.20716 1.21312 1.19854 1.23533 0.98977 0.95926 0.80882 1.86475 1.69345 1.55914 1.14744 1.23322 0.78205 0.82883 0.86019 1.90694 1.35069 1.25300 1.88072 1.19601 1.03292 0.99646 0.85083 1.25329 1.00638 1.03140 1.04065 1.21747 0.95480 1.00337 0.92607 1.66324 1.29884 1.05069 1.17139 1.28391 0.93673 1.01829 1.04080 1.84029 1.23412 1.28628 1.24718 0.94202 0.91529 0.93779 0.93767 0.91542 0.94184 0.96358 0.96357 0.92989 0.91567 0.91599 0.85512 0.86402 0.80692 0.78388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.08 37.16 0.30 -2.02 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.26 16 3 C -0.13 -2.32 8.08 37.16 0.30 -2.02 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.60 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.55 5.46 -17.81 -0.10 1.46 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.08 1.44 4.32 37.15 0.16 1.60 16 14 O -0.35 -5.40 8.88 -39.26 -0.35 -5.75 16 15 C 0.45 6.38 7.95 36.00 0.29 6.67 16 16 O -0.50 -8.77 15.78 -18.76 -0.30 -9.07 16 17 C -0.04 -0.33 6.35 -29.04 -0.18 -0.52 16 18 C -0.21 -2.17 5.09 -35.92 -0.18 -2.35 16 19 C 0.05 0.54 11.25 -19.18 -0.22 0.33 16 20 N -0.47 -5.44 10.54 -15.75 -0.17 -5.61 16 21 C 0.02 0.16 12.23 51.58 0.63 0.79 16 22 S 0.14 1.25 23.22 -107.50 -2.50 -1.24 16 23 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 24 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -32.23 327.49 -7.27 -39.50 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.14 Total: -2.80 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 0.53 Total: -10.44 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.57 Total: -31.28 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.64 Total: -14.82 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.23 -7.27 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842348596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.561 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds