Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 C 1.53001 * 109.47258 * 239.99320 * 2 1 3 5 5 C 1.50699 * 109.46871 * 60.00703 * 4 2 1 6 6 H 1.08000 * 120.00019 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00237 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47596 * 89.99602 * 9 7 5 11 11 H 1.48501 * 109.47210 * 209.99543 * 9 7 5 12 12 H 1.48504 * 109.47136 * 329.99362 * 9 7 5 13 13 C 1.53004 * 109.46686 * 119.99875 * 2 1 3 14 14 O 1.45209 * 109.46716 * 299.99761 * 13 2 1 15 15 C 1.34233 * 116.99482 * 180.02562 * 14 13 2 16 16 O 1.20828 * 120.00205 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99707 * 180.02562 * 15 14 13 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 15 14 19 19 C 1.33635 * 122.75319 * 124.73143 * 18 17 15 20 20 S 1.76192 * 107.92524 * 179.97438 * 19 18 17 21 21 C 1.70976 * 90.28427 * 0.27803 * 20 19 18 22 22 N 1.29027 * 110.16712 * 359.83656 * 21 20 19 23 23 H 1.09001 * 109.47178 * 300.00894 * 1 2 3 24 24 H 1.09001 * 109.46184 * 60.00263 * 1 2 3 25 25 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46777 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46710 * 299.99581 * 3 2 1 28 28 H 1.08998 * 109.47052 * 59.99744 * 3 2 1 29 29 H 1.08999 * 109.47182 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47308 * 300.00520 * 4 2 1 31 31 H 0.97000 * 119.99805 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46873 * 179.97438 * 13 2 1 33 33 H 1.09002 * 109.47275 * 59.99850 * 13 2 1 34 34 H 1.08997 * 109.47434 * 59.99737 * 17 15 14 35 35 H 1.08998 * 109.47220 * 299.99764 * 17 15 14 36 36 H 1.08001 * 126.03202 * 0.03585 * 19 18 17 37 37 H 1.08001 * 124.91761 * 179.84059 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5379 -0.0110 -2.4797 6 1 0.9167 0.8669 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5518 -3.8524 9 14 1.2475 0.3977 -5.2571 10 1 2.2254 1.4392 -5.6620 11 1 1.0822 -0.5818 -6.3610 12 1 -0.0607 1.0352 -4.9611 13 6 2.0399 -0.7213 1.2493 14 8 1.5559 -0.0366 2.4348 15 6 1.9169 -0.5464 3.6230 16 8 2.6146 -1.5317 3.6708 17 6 1.4520 0.1103 4.8972 18 6 1.9918 -0.6509 6.0805 19 6 2.7137 -0.0717 7.0445 20 16 3.1375 -1.3107 8.2233 21 6 2.3088 -2.4861 7.2986 22 7 1.7960 -1.9436 6.2462 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 -0.7218 -1.2489 30 1 1.6767 -1.7491 -1.2491 31 1 2.8609 -1.8833 -4.7334 32 1 3.1299 -0.7217 1.2491 33 1 1.6766 -1.7489 1.2494 34 1 0.3625 0.1089 4.9301 35 1 1.8151 1.1374 4.9300 36 1 2.9880 0.9718 7.0928 37 1 2.2263 -3.5312 7.5579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853122704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -77.897258 kcal Electronic energy + Delta-G solvation = -19630.292849 eV Core-core repulsion = 16498.448875 eV Total energy + Delta-G solvation = -3131.843974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70294 -40.53502 -38.65800 -36.81923 -34.41840 -33.34195 -29.88006 -29.11132 -27.94610 -27.73251 -25.94461 -24.98552 -22.42058 -20.48820 -19.92886 -19.07171 -18.62630 -18.31689 -17.60145 -16.95853 -16.62414 -16.48759 -15.57221 -15.27939 -14.95749 -14.80225 -14.37129 -14.18217 -14.09451 -13.97030 -13.61000 -13.29774 -12.92615 -12.74425 -12.64624 -12.39287 -12.31491 -12.23931 -11.96583 -11.82233 -11.57823 -11.35477 -11.02786 -10.89815 -10.56616 -10.53057 -10.38070 -9.79942 -8.15928 -6.24073 -0.21433 0.51269 0.76844 1.26216 1.42483 1.43502 1.51374 1.54719 2.07936 2.44470 3.18599 3.21630 3.78055 3.93006 3.94053 3.99795 4.21070 4.23014 4.43636 4.49695 4.55805 4.59668 4.67948 4.75075 5.03362 5.07362 5.12879 5.14572 5.42819 5.45853 5.48547 5.54042 5.56136 5.74781 5.87137 6.27679 6.79388 6.82469 6.90154 7.43741 8.96957 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.051445 B = 0.002836 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.139349 B = 9870.451747 C =10078.797190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.118 4.118 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.092 3.908 14 O -0.345 6.345 15 C 0.454 3.546 16 O -0.537 6.537 17 C -0.030 4.030 18 C 0.042 3.958 19 C -0.243 4.243 20 S 0.166 5.834 21 C 0.007 3.993 22 N -0.496 5.496 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.070 0.930 29 H -0.012 1.012 30 H -0.014 1.014 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.211 0.789 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 6.194 25.800 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.183 1.183 13 C 0.018 3.982 14 O -0.261 6.261 15 C 0.298 3.702 16 O -0.427 6.427 17 C -0.070 4.070 18 C -0.089 4.089 19 C -0.383 4.383 20 S 0.419 5.581 21 C -0.291 4.291 22 N -0.210 5.210 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.228 0.772 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.408 5.392 26.242 26.827 hybrid contribution -0.082 -0.250 -2.042 2.059 sum -1.490 5.143 24.199 24.784 Atomic orbital electron populations 1.21644 0.93469 1.00739 1.01760 1.20630 0.97153 0.96695 0.91027 1.21640 0.99637 0.94453 1.01831 1.18990 0.94407 0.94244 0.92129 1.21543 1.30622 1.12169 0.90872 0.90850 1.25971 0.95595 0.95837 1.02784 1.70126 1.38755 1.24935 1.24222 0.85490 0.79231 0.78111 0.78506 1.19968 1.21439 1.18315 1.23041 0.97972 0.95157 0.82011 1.86457 1.69581 1.55472 1.14632 1.24259 0.77162 0.82397 0.86383 1.90674 1.36864 1.26887 1.88227 1.20015 1.04723 1.00071 0.82145 1.19872 1.01621 0.89289 0.98167 1.27250 1.05494 1.06706 0.98819 1.83794 1.50265 0.99256 1.24825 1.28799 1.00136 1.06435 0.93691 1.66045 1.23291 1.11402 1.20293 0.91201 0.92472 0.94636 0.94386 0.92493 0.91073 0.99358 0.99524 0.93070 0.92871 0.93259 0.84248 0.82263 0.77195 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.08 71.98 0.58 -3.87 16 2 C -0.05 -2.25 0.61 -52.18 -0.03 -2.28 16 3 C -0.12 -4.34 8.08 71.98 0.58 -3.76 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.19 7.65 25.60 0.20 -28.00 16 6 H 0.07 3.78 5.68 -2.91 -0.02 3.76 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 8 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.09 3.57 4.32 71.98 0.31 3.88 16 14 O -0.35 -11.05 8.88 -51.44 -0.46 -11.50 16 15 C 0.45 13.73 7.92 71.23 0.56 14.29 16 16 O -0.54 -20.81 15.19 21.96 0.33 -20.47 16 17 C -0.03 -0.56 6.31 29.10 0.18 -0.38 16 18 C 0.04 0.90 5.64 41.52 0.23 1.13 16 19 C -0.24 -3.58 11.07 66.77 0.74 -2.84 16 20 S 0.17 2.16 23.22 -56.49 -1.31 0.85 16 21 C 0.01 0.13 12.23 130.65 1.60 1.73 16 22 N -0.50 -12.77 9.68 -191.54 -1.85 -14.62 16 23 H 0.07 2.19 7.68 -2.39 -0.02 2.17 16 24 H 0.06 2.22 6.62 -2.39 -0.02 2.21 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 28 H 0.07 2.16 7.68 -2.39 -0.02 2.14 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 33 H 0.05 2.04 8.13 -2.39 -0.02 2.02 16 34 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.16 1.66 8.03 -2.39 -0.02 1.64 16 36 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.22 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.79 326.23 5.63 -69.17 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.06 Total: 5.70 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.54 Total: -17.72 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.57 Total: -72.07 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.12 Total: -31.98 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.85 kcal Total: -74.79 5.63 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853122704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.730 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds