Wall clock time and date at job start Tue Mar 31 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38185 * 120.84076 * 2 1 4 4 C 1.38722 * 119.29299 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.48709 * 180.02562 * 4 3 2 6 6 N 1.32187 * 121.02363 * 0.02562 * 4 3 2 7 7 C 1.31648 * 121.85305 * 359.97261 * 6 4 3 8 8 C 1.39613 * 120.58251 * 0.03005 * 7 6 4 9 9 C 1.47600 * 120.53459 * 179.70283 * 8 7 6 10 10 O 1.21479 * 120.00140 * 173.92433 * 9 8 7 11 11 O 1.34727 * 119.99629 * 353.92055 * 9 8 7 12 12 C 1.45206 * 116.99868 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 O 1.42906 * 109.46978 * 64.99792 * 13 12 11 15 15 C 1.42899 * 114.00119 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47090 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00206 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99567 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00369 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99763 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47066 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47324 * 119.99676 * 20 18 16 23 23 H 1.48498 * 109.47101 * 239.99639 * 20 18 16 24 24 H 1.08999 * 109.46757 * 263.63724 * 1 2 3 25 25 H 1.09008 * 109.46933 * 23.63409 * 1 2 3 26 26 H 1.08995 * 109.47126 * 143.63275 * 1 2 3 27 27 H 1.07995 * 120.35426 * 0.02562 * 3 2 1 28 28 H 1.07990 * 119.71093 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46492 * 300.00042 * 12 11 9 30 30 H 1.08997 * 109.47207 * 59.99239 * 12 11 9 31 31 H 1.08992 * 109.47524 * 184.99581 * 13 12 11 32 32 H 1.08998 * 109.47448 * 305.00123 * 13 12 11 33 33 H 1.08997 * 109.46769 * 300.00099 * 15 14 13 34 34 H 1.08999 * 109.47193 * 59.99550 * 15 14 13 35 35 H 0.96996 * 120.00139 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6022 1.1490 -0.0005 5 9 4.2987 2.3066 0.0000 6 7 4.2526 -0.0018 -0.0016 7 6 3.6210 -1.1569 -0.0016 8 6 2.2256 -1.2034 -0.0011 9 6 1.5185 -2.4990 -0.0077 10 8 0.3093 -2.5317 0.1040 11 8 2.2143 -3.6454 -0.1378 12 6 1.4533 -4.8821 -0.1366 13 6 2.4070 -6.0680 -0.2937 14 8 3.2602 -6.1479 0.8499 15 6 4.1952 -7.2275 0.8033 16 6 5.0380 -7.2165 2.0525 17 1 4.8761 -6.4604 2.8064 18 6 6.0165 -8.1711 2.2324 19 7 6.2140 -9.0915 1.3141 20 14 7.0608 -8.1578 3.7812 21 1 6.6424 -7.0289 4.6506 22 1 6.8802 -9.4384 4.5109 23 1 8.4902 -7.9952 3.4131 24 1 -0.3633 -0.1139 1.0213 25 1 -0.3633 0.9415 -0.4120 26 1 -0.3633 -0.8275 -0.6093 27 1 1.6951 2.1328 0.0004 28 1 4.1871 -2.0765 -0.0020 29 1 0.9108 -4.9738 0.8043 30 1 0.7450 -4.8736 -0.9650 31 1 1.8305 -6.9888 -0.3819 32 1 3.0125 -5.9312 -1.1897 33 1 3.6560 -8.1725 0.7376 34 1 4.8376 -7.1144 -0.0700 35 1 6.9026 -9.7629 1.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870003571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:23 Heat of formation + Delta-G solvation = -140.859039 kcal Electronic energy + Delta-G solvation = -21178.239440 eV Core-core repulsion = 17477.452063 eV Total energy + Delta-G solvation = -3700.787378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.42349 -41.10101 -39.68759 -37.19231 -36.21761 -34.27680 -32.80972 -31.84838 -30.06079 -28.48426 -26.96741 -25.07564 -23.25402 -22.44803 -22.10805 -21.26851 -18.48435 -17.90919 -17.53707 -16.83809 -16.68783 -16.37943 -16.36030 -15.42838 -15.02064 -14.71822 -14.44024 -14.19198 -14.08597 -13.98372 -13.43702 -13.07173 -12.95536 -12.93238 -12.69912 -12.55375 -11.99647 -11.49043 -10.96175 -10.89905 -10.78334 -10.58471 -10.45879 -10.10025 -10.08040 -9.95692 -9.48270 -9.14279 -8.91736 -8.24891 -6.14152 -4.15899 0.05131 0.65681 2.25605 2.51915 3.11802 3.25067 3.28332 3.35091 3.41481 3.99159 4.20515 4.28205 4.30588 4.55753 4.68001 4.86989 5.04624 5.12146 5.22048 5.22848 5.32822 5.35768 5.38735 5.64947 5.79170 5.82376 5.90716 6.03543 6.13216 6.44500 7.01670 7.18522 7.36426 7.63929 7.76137 8.09547 8.48212 8.96860 9.49250 10.97406 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.003534 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.066765 B = 7920.933592 C = 9113.462253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.050 3.950 3 C -0.214 4.214 4 C 0.341 3.659 5 F -0.106 7.106 6 N -0.523 5.523 7 C 0.210 3.790 8 C -0.195 4.195 9 C 0.516 3.484 10 O -0.505 6.505 11 O -0.335 6.335 12 C 0.077 3.923 13 C 0.060 3.940 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 18.400 -5.635 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.043 3.957 3 C -0.235 4.235 4 C 0.189 3.811 5 F -0.085 7.085 6 N -0.238 5.238 7 C 0.052 3.948 8 C -0.199 4.199 9 C 0.361 3.639 10 O -0.395 6.395 11 O -0.251 6.251 12 C 0.004 3.996 13 C -0.017 4.017 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.108 0.892 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.174 0.826 28 H 0.207 0.793 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.026 0.974 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.670 18.397 -5.487 21.964 hybrid contribution -0.069 -0.162 0.523 0.552 sum -10.739 18.235 -4.965 21.737 Atomic orbital electron populations 1.21186 0.88110 1.04184 1.04737 1.20333 0.97887 0.90044 0.87473 1.21653 0.92432 1.00331 1.09056 1.18492 0.86848 0.81983 0.93790 1.91655 1.80184 1.44074 1.92579 1.67194 1.41676 0.97680 1.17245 1.23203 0.90425 0.95133 0.86062 1.20106 0.95166 0.91684 1.12937 1.20602 0.85527 0.84581 0.73212 1.90781 1.14767 1.87819 1.46144 1.86629 1.41338 1.14704 1.82399 1.23289 0.93708 0.79607 1.03034 1.22337 0.93325 0.94303 0.91772 1.87918 1.50091 1.54208 1.38892 1.20248 0.86334 0.83624 0.97775 1.21082 1.16612 1.13580 1.04066 0.91433 1.24944 0.97142 0.95037 0.97323 1.69963 1.33408 1.16218 1.34169 0.86283 0.79774 0.78058 0.82415 1.19449 1.20838 1.20780 0.89168 0.91067 0.87983 0.82595 0.79252 0.90193 0.90161 0.91758 0.93062 0.97599 0.97426 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.85 36.01 0.32 -0.70 16 2 C 0.05 0.49 5.95 -103.92 -0.62 -0.13 16 3 C -0.21 -1.87 9.75 -39.42 -0.38 -2.25 16 4 C 0.34 3.79 8.41 -17.22 -0.14 3.64 16 5 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 6 N -0.52 -6.79 10.36 -13.20 -0.14 -6.92 16 7 C 0.21 2.57 10.79 -17.12 -0.18 2.39 16 8 C -0.20 -2.32 5.89 -104.84 -0.62 -2.93 16 9 C 0.52 7.02 7.84 34.55 0.27 7.29 16 10 O -0.50 -7.17 13.29 -19.25 -0.26 -7.43 16 11 O -0.34 -5.06 9.48 -43.35 -0.41 -5.47 16 12 C 0.08 1.11 5.85 37.16 0.22 1.33 16 13 C 0.06 1.03 6.33 37.16 0.24 1.27 16 14 O -0.39 -9.09 10.30 -38.80 -0.40 -9.49 16 15 C 0.19 5.18 5.69 36.01 0.20 5.39 16 16 C -0.52 -14.97 9.43 -34.44 -0.32 -15.29 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.39 8.06 -51.92 -0.42 -0.03 16 26 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 27 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.19 2.25 7.63 -52.49 -0.40 1.85 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -32.29 317.91 -5.84 -38.13 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -4.05 Total: -4.86 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.12 Total: 1.51 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.60 Total: -32.72 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.07 Total: -22.40 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.29 -5.84 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870003571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.730 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds