Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47646 * 2 1 4 4 C 1.50700 * 109.47421 * 184.95259 * 3 2 1 5 5 C 1.38253 * 119.99940 * 264.98887 * 4 3 2 6 6 C 1.38219 * 119.99733 * 179.74422 * 5 4 3 7 7 C 1.38252 * 120.00083 * 0.54738 * 6 5 4 8 8 C 1.38215 * 119.99942 * 359.70318 * 7 6 5 9 9 C 1.38216 * 119.99667 * 85.25833 * 4 3 2 10 10 S 1.76192 * 120.00272 * 0.02562 * 9 4 3 11 11 O 1.42098 * 106.40412 * 279.68068 * 10 9 4 12 12 O 1.42093 * 106.40526 * 52.60193 * 10 9 4 13 13 N 1.65607 * 107.21827 * 166.14292 * 10 9 4 14 14 C 1.46495 * 119.99922 * 275.63650 * 13 10 9 15 15 C 1.36935 * 120.00039 * 95.63857 * 13 10 9 16 16 H 1.08007 * 120.00083 * 21.74770 * 15 13 10 17 17 C 1.38807 * 120.00296 * 201.74985 * 15 13 10 18 18 N 1.31617 * 119.99911 * 11.14064 * 17 15 13 19 19 Si 1.86797 * 120.00371 * 191.14656 * 17 15 13 20 20 H 1.48501 * 109.47235 * 5.00494 * 19 17 15 21 21 H 1.48497 * 109.47257 * 125.00286 * 19 17 15 22 22 H 1.48496 * 109.47218 * 245.00532 * 19 17 15 23 23 H 1.09000 * 109.46625 * 295.19054 * 1 2 3 24 24 H 1.09002 * 109.46839 * 55.18474 * 1 2 3 25 25 H 1.09000 * 109.47461 * 175.18835 * 1 2 3 26 26 H 1.09005 * 109.46678 * 120.00175 * 2 1 3 27 27 H 1.08999 * 109.46950 * 239.99110 * 2 1 3 28 28 H 1.09000 * 109.46755 * 304.95094 * 3 2 1 29 29 H 1.08999 * 109.47385 * 64.95259 * 3 2 1 30 30 H 1.07998 * 120.00410 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.99591 * 180.27926 * 6 5 4 32 32 H 1.08000 * 119.99927 * 179.72916 * 7 6 5 33 33 H 1.07999 * 120.00217 * 180.02562 * 8 7 6 34 34 H 1.09009 * 109.46886 * 93.06500 * 14 13 10 35 35 H 1.08991 * 109.47166 * 213.06287 * 14 13 10 36 36 H 1.09002 * 109.47269 * 333.06543 * 14 13 10 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5421 1.4441 -0.1227 5 6 4.3283 1.5151 1.0124 6 6 5.7059 1.5113 0.9001 7 6 6.2976 1.4480 -0.3477 8 6 5.5116 1.3822 -1.4827 9 6 4.1336 1.3803 -1.3702 10 16 3.1316 1.2977 -2.8171 11 8 2.7218 -0.0569 -2.9446 12 8 2.2169 2.3819 -2.7343 13 7 4.1142 1.6127 -4.1125 14 6 4.3909 2.9975 -4.5022 15 6 4.6680 0.5788 -4.8193 16 1 4.2184 -0.4025 -4.7823 17 6 5.8071 0.7919 -5.5832 18 7 6.4807 1.9160 -5.4609 19 14 6.3841 -0.5165 -6.7850 20 1 5.3957 -1.6242 -6.8230 21 1 6.5135 0.0780 -8.1396 22 1 7.7017 -1.0437 -6.3479 23 1 -0.3632 0.4374 0.9300 24 1 -0.3633 0.5867 -0.8437 25 1 -0.3634 -1.0240 -0.0862 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.6062 1.9811 -0.8423 29 1 1.7511 1.9300 0.9310 30 1 3.8661 1.5697 1.9869 31 1 6.3200 1.5622 1.7871 32 1 7.3740 1.4494 -0.4356 33 1 5.9738 1.3323 -2.4575 34 1 5.3073 3.3350 -4.0181 35 1 4.5097 3.0536 -5.5842 36 1 3.5615 3.6343 -4.1943 37 1 7.2766 2.0652 -5.9950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903102227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -51.595865 kcal Electronic energy + Delta-G solvation = -21257.665473 eV Core-core repulsion = 18126.962013 eV Total energy + Delta-G solvation = -3130.703460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.88934 -35.90935 -35.76343 -35.05611 -34.21073 -31.49549 -30.73231 -30.54819 -26.46025 -26.12893 -23.53580 -22.56476 -21.91148 -20.52229 -18.51839 -17.39105 -16.80135 -16.32436 -15.30493 -15.20253 -14.56488 -14.40797 -14.10193 -13.95134 -13.46641 -13.35940 -13.16477 -12.58819 -12.19816 -12.06379 -11.91453 -11.71888 -11.40374 -11.34203 -11.12953 -11.04512 -10.87512 -10.85248 -10.59153 -10.50785 -10.37839 -10.12020 -10.01482 -9.57625 -9.30703 -8.67851 -8.30647 -8.15083 -6.54359 -4.07275 1.48945 1.72372 1.80797 3.09557 3.16605 3.23769 3.95984 4.04882 4.36823 4.71986 4.92252 5.02022 5.17275 5.33992 5.37165 5.42002 5.57748 5.70746 5.83282 5.89384 6.00943 6.07627 6.14577 6.26319 6.31804 6.36541 6.46533 6.53026 6.67335 6.74951 6.84336 6.84788 6.89975 7.08558 7.27706 7.42402 7.43672 8.28868 8.66085 9.11602 10.42819 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.007116 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.567339 B = 3933.954957 C = 4558.636724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C -0.128 4.128 4 C 0.003 3.997 5 C -0.149 4.149 6 C -0.089 4.089 7 C -0.151 4.151 8 C -0.022 4.022 9 C -0.657 4.657 10 S 2.562 3.438 11 O -0.979 6.979 12 O -0.996 6.996 13 N -0.818 5.818 14 C 0.123 3.877 15 C -0.259 4.259 16 H 0.116 0.884 17 C 0.032 3.968 18 N -0.848 5.848 19 Si 0.925 3.075 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -0.008 7.319 7.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.165 4.165 4 C 0.002 3.998 5 C -0.168 4.168 6 C -0.107 4.107 7 C -0.170 4.170 8 C -0.040 4.040 9 C -0.735 4.735 10 S 2.658 3.342 11 O -0.968 6.968 12 O -0.986 6.986 13 N -0.645 5.645 14 C -0.024 4.024 15 C -0.404 4.404 16 H 0.133 0.867 17 C -0.178 4.178 18 N -0.488 5.488 19 Si 0.751 3.249 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.935 -0.019 7.486 7.732 hybrid contribution 1.348 -0.392 0.203 1.418 sum -0.587 -0.411 7.689 7.722 Atomic orbital electron populations 1.21762 0.95571 1.01748 1.01645 1.21734 0.96167 0.95684 1.03804 1.21302 0.91328 0.98676 1.05225 1.19458 0.95130 0.93151 0.92071 1.21019 0.93903 1.04115 0.97750 1.21192 0.94749 0.97459 0.97323 1.21233 0.99771 1.03053 0.92909 1.21169 0.91933 0.90989 0.99925 1.32215 1.09533 1.11654 1.20074 1.09774 0.78735 0.73432 0.72227 1.93370 1.82457 1.35528 1.85493 1.93338 1.63477 1.55219 1.86519 1.53713 1.67543 1.11132 1.32065 1.21327 0.98322 0.80316 1.02394 1.19996 1.07822 0.93161 1.19381 0.86653 1.25652 0.94816 0.97629 0.99730 1.70103 1.16197 1.23940 1.38566 0.85854 0.79033 0.80491 0.79518 1.18629 1.20293 1.20316 0.93076 0.92290 0.92556 0.92016 0.89517 0.87917 0.90417 0.86409 0.86463 0.86130 0.83545 0.93054 0.90371 0.94010 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.32 5.91 -26.74 -0.16 -2.48 16 3 C -0.13 -2.30 4.80 -27.89 -0.13 -2.43 16 4 C 0.00 0.06 5.13 -104.62 -0.54 -0.48 16 5 C -0.15 -2.49 9.68 -39.58 -0.38 -2.88 16 6 C -0.09 -1.41 10.05 -39.58 -0.40 -1.81 16 7 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 8 C -0.02 -0.44 9.57 -39.58 -0.38 -0.82 16 9 C -0.66 -14.26 5.83 -39.58 -0.23 -14.50 16 10 S 2.56 60.87 4.70 -107.50 -0.51 60.36 16 11 O -0.98 -24.98 14.85 -57.18 -0.85 -25.83 16 12 O -1.00 -24.47 14.38 -57.18 -0.82 -25.29 16 13 N -0.82 -19.69 2.36 -66.69 -0.16 -19.85 16 14 C 0.12 2.76 8.93 59.84 0.53 3.29 16 15 C -0.26 -6.41 9.14 -15.06 -0.14 -6.54 16 16 H 0.12 2.89 7.10 -52.48 -0.37 2.52 16 17 C 0.03 0.76 5.13 -17.43 -0.09 0.67 16 18 N -0.85 -20.05 10.55 55.49 0.59 -19.47 16 19 Si 0.93 18.55 29.57 -169.99 -5.03 13.52 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.09 1.72 6.12 -51.93 -0.32 1.41 16 28 H 0.10 2.06 5.26 -51.93 -0.27 1.78 16 29 H 0.08 1.15 8.05 -51.93 -0.42 0.74 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.15 3.20 7.05 -52.49 -0.37 2.83 16 34 H 0.05 1.14 7.50 -51.92 -0.39 0.75 16 35 H 0.08 1.77 7.06 -51.93 -0.37 1.40 16 36 H 0.04 0.88 7.02 -51.93 -0.36 0.52 16 37 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -28.05 312.05 -8.98 -37.03 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.97 Total: 7.63 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: -1.94 Total: -32.81 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.43 Total: -39.32 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.67 Total: -51.12 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 60.87 SS G_CDS: -0.51 Total: 60.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.05 -8.98 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903102227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.566 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds