Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47646 * 2 1 4 4 C 1.50700 * 109.47421 * 184.95259 * 3 2 1 5 5 C 1.38253 * 119.99940 * 264.98887 * 4 3 2 6 6 C 1.38219 * 119.99733 * 179.74422 * 5 4 3 7 7 C 1.38252 * 120.00083 * 0.54738 * 6 5 4 8 8 C 1.38215 * 119.99942 * 359.70318 * 7 6 5 9 9 C 1.38216 * 119.99667 * 85.25833 * 4 3 2 10 10 S 1.76192 * 120.00272 * 0.02562 * 9 4 3 11 11 O 1.42098 * 106.40412 * 279.68068 * 10 9 4 12 12 O 1.42093 * 106.40526 * 52.60193 * 10 9 4 13 13 N 1.65607 * 107.21827 * 166.14292 * 10 9 4 14 14 C 1.46495 * 119.99922 * 275.63650 * 13 10 9 15 15 C 1.36935 * 120.00039 * 95.63857 * 13 10 9 16 16 H 1.08007 * 120.00083 * 21.74770 * 15 13 10 17 17 C 1.38807 * 120.00296 * 201.74985 * 15 13 10 18 18 N 1.31617 * 119.99911 * 11.14064 * 17 15 13 19 19 Si 1.86797 * 120.00371 * 191.14656 * 17 15 13 20 20 H 1.48501 * 109.47235 * 5.00494 * 19 17 15 21 21 H 1.48497 * 109.47257 * 125.00286 * 19 17 15 22 22 H 1.48496 * 109.47218 * 245.00532 * 19 17 15 23 23 H 1.09000 * 109.46625 * 295.19054 * 1 2 3 24 24 H 1.09002 * 109.46839 * 55.18474 * 1 2 3 25 25 H 1.09000 * 109.47461 * 175.18835 * 1 2 3 26 26 H 1.09005 * 109.46678 * 120.00175 * 2 1 3 27 27 H 1.08999 * 109.46950 * 239.99110 * 2 1 3 28 28 H 1.09000 * 109.46755 * 304.95094 * 3 2 1 29 29 H 1.08999 * 109.47385 * 64.95259 * 3 2 1 30 30 H 1.07998 * 120.00410 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.99591 * 180.27926 * 6 5 4 32 32 H 1.08000 * 119.99927 * 179.72916 * 7 6 5 33 33 H 1.07999 * 120.00217 * 180.02562 * 8 7 6 34 34 H 1.09009 * 109.46886 * 93.06500 * 14 13 10 35 35 H 1.08991 * 109.47166 * 213.06287 * 14 13 10 36 36 H 1.09002 * 109.47269 * 333.06543 * 14 13 10 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5421 1.4441 -0.1227 5 6 4.3283 1.5151 1.0124 6 6 5.7059 1.5113 0.9001 7 6 6.2976 1.4480 -0.3477 8 6 5.5116 1.3822 -1.4827 9 6 4.1336 1.3803 -1.3702 10 16 3.1316 1.2977 -2.8171 11 8 2.7218 -0.0569 -2.9446 12 8 2.2169 2.3819 -2.7343 13 7 4.1142 1.6127 -4.1125 14 6 4.3909 2.9975 -4.5022 15 6 4.6680 0.5788 -4.8193 16 1 4.2184 -0.4025 -4.7823 17 6 5.8071 0.7919 -5.5832 18 7 6.4807 1.9160 -5.4609 19 14 6.3841 -0.5165 -6.7850 20 1 5.3957 -1.6242 -6.8230 21 1 6.5135 0.0780 -8.1396 22 1 7.7017 -1.0437 -6.3479 23 1 -0.3632 0.4374 0.9300 24 1 -0.3633 0.5867 -0.8437 25 1 -0.3634 -1.0240 -0.0862 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.6062 1.9811 -0.8423 29 1 1.7511 1.9300 0.9310 30 1 3.8661 1.5697 1.9869 31 1 6.3200 1.5622 1.7871 32 1 7.3740 1.4494 -0.4356 33 1 5.9738 1.3323 -2.4575 34 1 5.3073 3.3350 -4.0181 35 1 4.5097 3.0536 -5.5842 36 1 3.5615 3.6343 -4.1943 37 1 7.2766 2.0652 -5.9950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903102227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = -67.583185 kcal Electronic energy + Delta-G solvation = -21258.358735 eV Core-core repulsion = 18126.962013 eV Total energy + Delta-G solvation = -3131.396722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30254 -37.83959 -37.60642 -36.76627 -35.84458 -33.31256 -32.08268 -31.98197 -28.30583 -27.44655 -25.38966 -24.03633 -23.24909 -21.91533 -20.34360 -19.12954 -18.60337 -18.08115 -16.83503 -16.69764 -16.38713 -16.06579 -15.53368 -15.32575 -15.16376 -14.80870 -14.65666 -14.29198 -13.74089 -13.53200 -13.34833 -13.27571 -13.17689 -12.87879 -12.78080 -12.73366 -12.62889 -12.38052 -12.19561 -12.11430 -11.91162 -11.87395 -11.52667 -11.22244 -11.10002 -10.14081 -9.98180 -9.71554 -8.32437 -5.96531 -0.12880 0.04033 0.39173 1.48155 1.50890 1.63490 2.25008 2.56381 2.63481 2.89224 3.12119 3.64132 3.84084 4.02702 4.04406 4.11316 4.15839 4.34216 4.44808 4.48397 4.57759 4.66098 4.77525 4.88215 4.91020 4.99942 5.02524 5.13807 5.21021 5.23395 5.32123 5.38147 5.41390 5.45629 5.48256 5.61152 6.03321 6.43821 6.82679 7.27434 8.66288 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.007116 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.567339 B = 3933.954957 C = 4558.636724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C -0.131 4.131 4 C -0.014 4.014 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.154 4.154 8 C -0.044 4.044 9 C -0.686 4.686 10 S 2.588 3.412 11 O -1.004 7.004 12 O -1.011 7.011 13 N -0.835 5.835 14 C 0.132 3.868 15 C -0.298 4.298 16 H 0.100 0.900 17 C 0.005 3.995 18 N -0.869 5.869 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.271 1.271 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -0.076 10.281 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.169 4.169 4 C -0.015 4.015 5 C -0.162 4.162 6 C -0.090 4.090 7 C -0.173 4.173 8 C -0.063 4.063 9 C -0.769 4.769 10 S 2.688 3.312 11 O -0.994 6.994 12 O -1.001 7.001 13 N -0.663 5.663 14 C -0.014 4.014 15 C -0.440 4.440 16 H 0.118 0.882 17 C -0.203 4.203 18 N -0.509 5.509 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.196 1.196 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.178 0.822 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.213 -0.086 10.363 10.434 hybrid contribution 1.089 -0.327 -0.479 1.234 sum -0.124 -0.413 9.884 9.893 Atomic orbital electron populations 1.21784 0.93820 1.02571 1.02524 1.21750 0.97835 0.94996 1.03037 1.21370 0.90459 0.99167 1.05870 1.19793 0.96294 0.93301 0.92128 1.21505 0.94272 1.02060 0.98357 1.21764 0.94996 0.94116 0.98097 1.21570 1.00959 1.02101 0.92623 1.21106 0.91904 0.92859 1.00432 1.31611 1.09692 1.15778 1.19837 1.07871 0.77962 0.72578 0.72833 1.93342 1.83009 1.36746 1.86347 1.93322 1.64104 1.55516 1.87148 1.53458 1.67875 1.11427 1.33497 1.21228 0.98334 0.79984 1.01887 1.19915 1.09197 0.92774 1.22107 0.88247 1.26244 0.94331 0.99375 1.00391 1.70151 1.16529 1.24955 1.39225 0.85022 0.78447 0.78150 0.77823 1.19125 1.19440 1.19584 0.90052 0.93994 0.91400 0.89599 0.93401 0.90820 0.86675 0.82208 0.81544 0.83554 0.85918 0.93396 0.91049 0.93369 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.91 71.98 0.71 -3.38 16 2 C -0.14 -4.54 5.91 30.59 0.18 -4.36 16 3 C -0.13 -4.51 4.80 29.84 0.14 -4.36 16 4 C -0.01 -0.52 5.13 -19.87 -0.10 -0.62 16 5 C -0.14 -4.15 9.68 22.27 0.22 -3.93 16 6 C -0.07 -1.93 10.05 22.27 0.22 -1.70 16 7 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 8 C -0.04 -1.83 9.57 22.27 0.21 -1.62 16 9 C -0.69 -30.09 5.83 22.27 0.13 -29.96 16 10 S 2.59 128.45 4.70 -56.49 -0.27 128.18 16 11 O -1.00 -54.07 14.85 -128.00 -1.90 -55.97 16 12 O -1.01 -51.57 14.38 -128.00 -1.84 -53.41 16 13 N -0.83 -42.33 2.36 -364.91 -0.86 -43.19 16 14 C 0.13 6.21 8.93 127.77 1.14 7.35 16 15 C -0.30 -15.55 9.14 84.03 0.77 -14.78 16 16 H 0.10 5.34 7.10 -2.91 -0.02 5.32 16 17 C 0.00 0.23 5.13 84.86 0.44 0.66 16 18 N -0.87 -42.28 10.55 21.65 0.23 -42.06 16 19 Si 0.98 38.82 29.57 68.60 2.03 40.85 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.05 1.94 6.12 -2.39 -0.01 1.92 16 28 H 0.07 2.96 5.26 -2.39 -0.01 2.95 16 29 H 0.11 3.00 8.05 -2.39 -0.02 2.98 16 30 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.12 5.63 7.05 -2.91 -0.02 5.61 16 34 H 0.05 2.24 7.50 -2.38 -0.02 2.22 16 35 H 0.07 3.39 7.06 -2.39 -0.02 3.38 16 36 H 0.05 2.14 7.02 -2.39 -0.02 2.12 16 37 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 Total: -1.00 -63.70 312.05 2.74 -60.96 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.06 Total: 26.11 kcal Atomic # 6 Polarization: -65.76 SS G_CDS: 4.29 Total: -61.47 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -0.63 Total: -85.25 kcal Atomic # 8 Polarization: -105.64 SS G_CDS: -3.74 Total: -109.38 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: 128.45 SS G_CDS: -0.27 Total: 128.18 kcal Total: -63.70 2.74 -60.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903102227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.622 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds