Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 C 1.50696 * 109.47097 * 185.26028 * 3 2 1 5 5 C 1.38259 * 120.00361 * 270.12761 * 4 3 2 6 6 C 1.38212 * 119.99760 * 179.74293 * 5 4 3 7 7 C 1.38248 * 120.00173 * 0.55551 * 6 5 4 8 8 C 1.38218 * 120.00229 * 359.70169 * 7 6 5 9 9 C 1.38214 * 119.99411 * 90.40430 * 4 3 2 10 10 S 1.76191 * 120.00495 * 359.97438 * 9 4 3 11 11 O 1.42100 * 106.40656 * 177.58800 * 10 9 4 12 12 O 1.42103 * 106.40366 * 310.51020 * 10 9 4 13 13 N 1.65603 * 107.21910 * 64.04853 * 10 9 4 14 14 C 1.46503 * 119.99967 * 64.90298 * 13 10 9 15 15 C 1.50697 * 109.46946 * 163.38619 * 14 13 10 16 16 H 1.07997 * 120.00156 * 4.96181 * 15 14 13 17 17 C 1.37876 * 119.99887 * 184.96023 * 15 14 13 18 18 N 1.31514 * 119.99755 * 5.05321 * 17 15 14 19 19 Si 1.86802 * 120.00285 * 185.04888 * 17 15 14 20 20 H 1.48507 * 109.46807 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47014 * 119.99818 * 19 17 15 22 22 H 1.48498 * 109.47108 * 240.00346 * 19 17 15 23 23 H 1.09004 * 109.47141 * 175.03207 * 1 2 3 24 24 H 1.08995 * 109.47231 * 295.02991 * 1 2 3 25 25 H 1.08995 * 109.47043 * 55.03346 * 1 2 3 26 26 H 1.09005 * 109.46702 * 120.00226 * 2 1 3 27 27 H 1.09003 * 109.47322 * 239.99761 * 2 1 3 28 28 H 1.09002 * 109.46752 * 305.26558 * 3 2 1 29 29 H 1.09003 * 109.47082 * 65.26224 * 3 2 1 30 30 H 1.07997 * 119.99770 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.99771 * 180.27322 * 6 5 4 32 32 H 1.08007 * 120.00100 * 179.72264 * 7 6 5 33 33 H 1.08000 * 120.00197 * 180.02562 * 8 7 6 34 34 H 0.96996 * 119.99837 * 244.90924 * 13 10 9 35 35 H 1.08998 * 109.46937 * 283.38453 * 14 13 10 36 36 H 1.08995 * 109.46941 * 43.38100 * 14 13 10 37 37 H 0.97005 * 119.99786 * 184.99957 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5413 1.4445 -0.1303 5 6 4.3336 1.4061 1.0022 6 6 5.7105 1.4025 0.8824 7 6 6.2956 1.4489 -0.3693 8 6 5.5037 1.4926 -1.5013 9 6 4.1262 1.4904 -1.3817 10 16 3.1167 1.5460 -2.8246 11 8 4.0030 1.6434 -3.9311 12 8 2.1594 0.5051 -2.6850 13 7 2.2707 2.9688 -2.7765 14 6 2.9816 4.2469 -2.8618 15 6 2.0054 5.3427 -3.2042 16 1 0.9493 5.1254 -3.2655 17 6 2.4606 6.6228 -3.4393 18 7 3.7526 6.8672 -3.4628 19 14 1.2422 8.0098 -3.7244 20 1 -0.1416 7.4764 -3.6484 21 1 1.4287 9.0539 -2.6851 22 1 1.4710 8.6014 -5.0671 23 1 -0.3633 -1.0238 -0.0890 24 1 -0.3633 0.4348 0.9311 25 1 -0.3633 0.5889 -0.8421 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.6017 1.9828 -0.8391 29 1 1.7557 1.9284 0.9334 30 1 3.8765 1.3743 1.9801 31 1 6.3294 1.3681 1.7668 32 1 7.3717 1.4507 -0.4627 33 1 5.9608 1.5285 -2.4791 34 1 1.3045 2.9559 -2.6918 35 1 3.4518 4.4657 -1.9031 36 1 3.7463 4.1863 -3.6361 37 1 4.0722 7.7784 -3.5557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915052921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -65.516623 kcal Electronic energy + Delta-G solvation = -20758.071953 eV Core-core repulsion = 17626.764844 eV Total energy + Delta-G solvation = -3131.307109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35147 -36.84941 -35.32196 -35.02181 -34.46821 -32.16877 -31.13886 -30.98288 -26.80068 -26.35462 -23.09292 -22.57465 -22.17472 -20.81796 -18.98629 -17.60327 -17.22038 -16.19578 -15.81178 -15.60574 -15.00915 -14.60345 -14.40407 -14.16057 -13.73262 -13.61035 -13.33990 -12.68389 -12.52351 -12.24646 -12.07522 -11.97198 -11.80628 -11.76000 -11.51052 -11.38023 -11.03104 -10.98324 -10.88695 -10.72718 -10.37613 -10.28257 -10.12466 -9.47747 -9.21257 -8.82310 -8.69061 -8.24175 -6.18122 -4.22730 0.87820 1.12397 1.41240 3.23973 3.31900 3.35142 3.50978 3.77939 4.26394 4.34675 4.65009 4.80117 4.91823 5.10550 5.14737 5.18120 5.24703 5.34825 5.54304 5.56725 5.68299 5.83570 5.92678 5.97881 6.03053 6.20140 6.25192 6.33910 6.41950 6.44180 6.51859 6.64942 6.96818 7.27615 7.34270 7.79371 7.80059 8.16541 8.81670 9.42022 10.92210 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.006026 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.187035 B = 4645.786522 C = 5120.726535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.108 4.108 4 C 0.025 3.975 5 C -0.144 4.144 6 C -0.069 4.069 7 C -0.149 4.149 8 C -0.017 4.017 9 C -0.667 4.667 10 S 2.687 3.313 11 O -0.966 6.966 12 O -0.971 6.971 13 N -1.103 6.103 14 C 0.246 3.754 15 C -0.528 4.528 16 H 0.066 0.934 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.409 0.591 35 H 0.017 0.983 36 H 0.043 0.957 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -11.305 9.563 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.145 4.145 4 C 0.024 3.976 5 C -0.163 4.163 6 C -0.087 4.087 7 C -0.168 4.168 8 C -0.036 4.036 9 C -0.752 4.752 10 S 2.776 3.224 11 O -0.956 6.956 12 O -0.961 6.961 13 N -0.866 5.866 14 C 0.123 3.877 15 C -0.567 4.567 16 H 0.085 0.915 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.244 0.756 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.772 -11.792 8.811 14.741 hybrid contribution -0.450 1.290 0.729 1.549 sum 0.322 -10.501 9.540 14.192 Atomic orbital electron populations 1.21708 0.95551 1.01618 1.01530 1.21642 0.96221 0.94909 1.03285 1.21070 0.90038 0.99158 1.04267 1.19533 0.95742 0.90656 0.91654 1.21095 0.93791 1.03202 0.98172 1.21362 0.94948 0.94801 0.97589 1.21227 1.00100 1.02859 0.92586 1.21001 0.91616 0.90974 1.00025 1.31007 1.08692 1.17398 1.18140 1.01954 0.73568 0.73045 0.73831 1.93545 1.66931 1.86538 1.48594 1.93526 1.60495 1.55105 1.87002 1.55495 1.18269 1.22327 1.90475 1.19086 0.93120 0.78489 0.96990 1.21242 0.93642 0.93293 1.48561 0.91548 1.24969 0.95418 0.99018 0.94749 1.69963 1.12656 1.20726 1.49377 0.86399 0.81148 0.81712 0.77912 1.19576 1.20835 1.20823 0.92857 0.93393 0.92067 0.92678 0.88782 0.90202 0.89882 0.85527 0.85664 0.85359 0.84029 0.75582 0.96493 0.93870 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.63 5.43 -26.73 -0.15 -1.77 16 3 C -0.11 -1.52 4.59 -27.88 -0.13 -1.65 16 4 C 0.03 0.39 5.13 -104.63 -0.54 -0.15 16 5 C -0.14 -1.89 9.70 -39.58 -0.38 -2.27 16 6 C -0.07 -0.84 10.05 -39.59 -0.40 -1.24 16 7 C -0.15 -1.98 10.05 -39.59 -0.40 -2.38 16 8 C -0.02 -0.27 9.55 -39.58 -0.38 -0.65 16 9 C -0.67 -11.44 5.88 -39.58 -0.23 -11.68 16 10 S 2.69 51.03 4.93 -107.50 -0.53 50.50 16 11 O -0.97 -21.34 16.42 -57.17 -0.94 -22.28 16 12 O -0.97 -18.06 14.10 -57.17 -0.81 -18.87 16 13 N -1.10 -22.30 4.80 -11.66 -0.06 -22.36 16 14 C 0.25 6.11 6.00 -5.19 -0.03 6.08 16 15 C -0.53 -14.08 9.28 -34.44 -0.32 -14.40 16 16 H 0.07 1.69 7.66 -52.49 -0.40 1.28 16 17 C 0.06 1.69 5.45 -17.82 -0.10 1.59 16 18 N -0.89 -25.51 13.28 55.43 0.74 -24.77 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.43 5.88 -51.93 -0.31 1.12 16 28 H 0.08 1.21 5.00 -51.93 -0.26 0.95 16 29 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.14 2.21 7.34 -52.49 -0.39 1.82 16 34 H 0.41 7.44 8.10 -34.47 -0.28 7.16 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 1.18 7.71 -51.93 -0.40 0.78 16 37 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -31.70 318.39 -9.47 -41.16 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.97 Total: 6.01 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -2.68 Total: -29.90 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.68 Total: -47.13 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.75 Total: -41.15 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.53 Total: 50.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.70 -9.47 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915052921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.354 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds