Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 C 1.50696 * 109.47097 * 185.26028 * 3 2 1 5 5 C 1.38259 * 120.00361 * 270.12761 * 4 3 2 6 6 C 1.38212 * 119.99760 * 179.74293 * 5 4 3 7 7 C 1.38248 * 120.00173 * 0.55551 * 6 5 4 8 8 C 1.38218 * 120.00229 * 359.70169 * 7 6 5 9 9 C 1.38214 * 119.99411 * 90.40430 * 4 3 2 10 10 S 1.76191 * 120.00495 * 359.97438 * 9 4 3 11 11 O 1.42100 * 106.40656 * 177.58800 * 10 9 4 12 12 O 1.42103 * 106.40366 * 310.51020 * 10 9 4 13 13 N 1.65603 * 107.21910 * 64.04853 * 10 9 4 14 14 C 1.46503 * 119.99967 * 64.90298 * 13 10 9 15 15 C 1.50697 * 109.46946 * 163.38619 * 14 13 10 16 16 H 1.07997 * 120.00156 * 4.96181 * 15 14 13 17 17 C 1.37876 * 119.99887 * 184.96023 * 15 14 13 18 18 N 1.31514 * 119.99755 * 5.05321 * 17 15 14 19 19 Si 1.86802 * 120.00285 * 185.04888 * 17 15 14 20 20 H 1.48507 * 109.46807 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47014 * 119.99818 * 19 17 15 22 22 H 1.48498 * 109.47108 * 240.00346 * 19 17 15 23 23 H 1.09004 * 109.47141 * 175.03207 * 1 2 3 24 24 H 1.08995 * 109.47231 * 295.02991 * 1 2 3 25 25 H 1.08995 * 109.47043 * 55.03346 * 1 2 3 26 26 H 1.09005 * 109.46702 * 120.00226 * 2 1 3 27 27 H 1.09003 * 109.47322 * 239.99761 * 2 1 3 28 28 H 1.09002 * 109.46752 * 305.26558 * 3 2 1 29 29 H 1.09003 * 109.47082 * 65.26224 * 3 2 1 30 30 H 1.07997 * 119.99770 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.99771 * 180.27322 * 6 5 4 32 32 H 1.08007 * 120.00100 * 179.72264 * 7 6 5 33 33 H 1.08000 * 120.00197 * 180.02562 * 8 7 6 34 34 H 0.96996 * 119.99837 * 244.90924 * 13 10 9 35 35 H 1.08998 * 109.46937 * 283.38453 * 14 13 10 36 36 H 1.08995 * 109.46941 * 43.38100 * 14 13 10 37 37 H 0.97005 * 119.99786 * 184.99957 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5413 1.4445 -0.1303 5 6 4.3336 1.4061 1.0022 6 6 5.7105 1.4025 0.8824 7 6 6.2956 1.4489 -0.3693 8 6 5.5037 1.4926 -1.5013 9 6 4.1262 1.4904 -1.3817 10 16 3.1167 1.5460 -2.8246 11 8 4.0030 1.6434 -3.9311 12 8 2.1594 0.5051 -2.6850 13 7 2.2707 2.9688 -2.7765 14 6 2.9816 4.2469 -2.8618 15 6 2.0054 5.3427 -3.2042 16 1 0.9493 5.1254 -3.2655 17 6 2.4606 6.6228 -3.4393 18 7 3.7526 6.8672 -3.4628 19 14 1.2422 8.0098 -3.7244 20 1 -0.1416 7.4764 -3.6484 21 1 1.4287 9.0539 -2.6851 22 1 1.4710 8.6014 -5.0671 23 1 -0.3633 -1.0238 -0.0890 24 1 -0.3633 0.4348 0.9311 25 1 -0.3633 0.5889 -0.8421 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.6017 1.9828 -0.8391 29 1 1.7557 1.9284 0.9334 30 1 3.8765 1.3743 1.9801 31 1 6.3294 1.3681 1.7668 32 1 7.3717 1.4507 -0.4627 33 1 5.9608 1.5285 -2.4791 34 1 1.3045 2.9559 -2.6918 35 1 3.4518 4.4657 -1.9031 36 1 3.7463 4.1863 -3.6361 37 1 4.0722 7.7784 -3.5557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915052921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -86.397895 kcal Electronic energy + Delta-G solvation = -20758.977433 eV Core-core repulsion = 17626.764844 eV Total energy + Delta-G solvation = -3132.212589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44503 -38.39466 -36.92640 -36.62116 -35.82916 -34.15073 -32.24234 -32.03523 -28.78169 -27.41726 -24.53727 -24.23493 -23.27034 -21.89463 -20.52778 -19.24733 -18.66845 -17.80478 -17.41213 -16.82806 -16.61240 -16.08320 -15.55723 -15.46850 -15.10199 -14.76163 -14.67738 -14.42611 -14.06340 -13.59196 -13.57107 -13.34619 -13.18702 -13.10758 -12.94779 -12.80807 -12.68081 -12.49800 -12.12220 -12.04430 -11.94803 -11.60819 -11.46217 -11.34348 -10.78352 -10.33217 -10.12824 -9.77695 -8.26131 -6.38625 -0.53294 -0.12668 0.32241 1.43414 1.44940 1.57604 2.09041 2.41117 2.51173 2.80668 3.08211 3.45086 3.63497 3.81512 4.00302 4.17818 4.23947 4.36268 4.43186 4.51993 4.60970 4.68149 4.78331 4.90128 4.99338 5.02361 5.15192 5.22655 5.25242 5.28397 5.33184 5.38374 5.49504 5.59231 5.72971 5.92301 5.95707 6.29609 6.75987 7.31098 8.85589 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.006026 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.187035 B = 4645.786522 C = 5120.726535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.011 3.989 5 C -0.144 4.144 6 C -0.058 4.058 7 C -0.150 4.150 8 C -0.046 4.046 9 C -0.686 4.686 10 S 2.696 3.304 11 O -1.006 7.006 12 O -0.970 6.970 13 N -1.101 6.101 14 C 0.262 3.738 15 C -0.546 4.546 16 H 0.076 0.924 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.282 1.282 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.418 0.582 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -11.311 12.228 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.151 4.151 4 C 0.010 3.990 5 C -0.163 4.163 6 C -0.076 4.076 7 C -0.169 4.169 8 C -0.065 4.065 9 C -0.775 4.775 10 S 2.790 3.210 11 O -0.997 6.997 12 O -0.960 6.960 13 N -0.863 5.863 14 C 0.138 3.862 15 C -0.586 4.586 16 H 0.094 0.906 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.208 1.208 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.027 0.973 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.215 -11.815 11.438 16.446 hybrid contribution -0.212 1.193 -0.008 1.212 sum 0.003 -10.621 11.430 15.603 Atomic orbital electron populations 1.21728 0.94662 1.02159 1.01965 1.21622 0.97038 0.94247 1.03053 1.21173 0.89406 0.99747 1.04730 1.19816 0.96683 0.90874 0.91653 1.21553 0.94262 1.01719 0.98721 1.21911 0.95149 0.92060 0.98474 1.21621 1.01461 1.01608 0.92164 1.21156 0.91692 0.92683 1.01012 1.30529 1.08787 1.20674 1.17558 1.01368 0.73236 0.72432 0.74001 1.93487 1.67771 1.86892 1.51528 1.93528 1.60777 1.54454 1.87268 1.55283 1.18770 1.21292 1.90930 1.18614 0.92434 0.80064 0.95120 1.21663 0.94412 0.94091 1.48406 0.90572 1.25925 0.97230 1.01779 0.94305 1.70087 1.14705 1.21517 1.50402 0.85285 0.79074 0.78247 0.77711 1.18293 1.19980 1.20794 0.91971 0.91435 0.93508 0.90515 0.91350 0.91962 0.87500 0.82106 0.81328 0.82452 0.85112 0.74647 0.97460 0.97350 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.05 5.43 30.59 0.17 -2.88 16 3 C -0.11 -3.05 4.59 29.85 0.14 -2.91 16 4 C 0.01 0.33 5.13 -19.87 -0.10 0.23 16 5 C -0.14 -3.29 9.70 22.27 0.22 -3.08 16 6 C -0.06 -1.20 10.05 22.27 0.22 -0.97 16 7 C -0.15 -3.69 10.05 22.27 0.22 -3.47 16 8 C -0.05 -1.50 9.55 22.27 0.21 -1.29 16 9 C -0.69 -23.94 5.88 22.27 0.13 -23.81 16 10 S 2.70 107.42 4.93 -56.49 -0.28 107.15 16 11 O -1.01 -47.44 16.42 -128.00 -2.10 -49.54 16 12 O -0.97 -37.36 14.10 -128.00 -1.80 -39.17 16 13 N -1.10 -46.37 4.80 -190.79 -0.92 -47.28 16 14 C 0.26 13.57 6.00 85.63 0.51 14.08 16 15 C -0.55 -29.62 9.28 25.60 0.24 -29.38 16 16 H 0.08 3.87 7.66 -2.91 -0.02 3.85 16 17 C 0.01 0.40 5.45 84.65 0.46 0.86 16 18 N -0.93 -54.30 13.28 21.45 0.28 -54.01 16 19 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.07 2.06 5.88 -2.39 -0.01 2.05 16 28 H 0.06 1.88 5.00 -2.39 -0.01 1.87 16 29 H 0.11 2.31 8.09 -2.39 -0.02 2.29 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.13 4.38 7.34 -2.91 -0.02 4.36 16 34 H 0.42 15.70 8.10 -96.75 -0.78 14.91 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.01 0.49 7.71 -2.39 -0.02 0.48 16 37 H 0.27 14.66 8.32 -92.70 -0.77 13.89 16 Total: -1.00 -70.07 318.39 0.64 -69.43 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.29 Total: 24.17 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.13 Total: -55.18 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -0.63 Total: -101.29 kcal Atomic # 8 Polarization: -84.80 SS G_CDS: -3.91 Total: -88.71 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 107.42 SS G_CDS: -0.28 Total: 107.15 kcal Total: -70.07 0.64 -69.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915052921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.965 kcal (2) G-P(sol) polarization free energy of solvation -70.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds