Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46664 * 2 1 4 4 C 1.52998 * 109.46895 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46854 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.03776 * 264.99174 * 5 4 3 7 7 C 1.38266 * 120.07722 * 179.97438 * 6 5 4 8 8 C 1.38314 * 120.14674 * 0.04980 * 7 6 5 9 9 C 1.38080 * 120.07388 * 359.97438 * 8 7 6 10 10 C 1.38894 * 120.04008 * 84.72779 * 5 4 3 11 11 N 1.39677 * 120.07033 * 0.02562 * 10 5 4 12 12 S 1.65597 * 119.99788 * 146.47176 * 11 10 5 13 13 O 1.42100 * 106.40201 * 181.25152 * 12 11 10 14 14 O 1.42104 * 106.40022 * 314.16643 * 12 11 10 15 15 C 1.76194 * 107.22053 * 67.70735 * 12 11 10 16 16 H 1.08000 * 120.00575 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99873 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99878 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00076 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47097 * 90.00133 * 19 17 15 21 21 H 1.48496 * 109.47183 * 210.00437 * 19 17 15 22 22 H 1.48500 * 109.46732 * 330.00292 * 19 17 15 23 23 H 1.08995 * 109.47589 * 60.00005 * 1 2 3 24 24 H 1.09000 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47296 * 299.99422 * 1 2 3 26 26 H 1.09003 * 109.46851 * 240.00281 * 2 1 3 27 27 H 1.08997 * 109.47313 * 119.99546 * 2 1 3 28 28 H 1.09002 * 109.47503 * 60.00039 * 3 2 1 29 29 H 1.09004 * 109.47170 * 300.00428 * 3 2 1 30 30 H 1.09002 * 109.47661 * 59.99910 * 4 3 2 31 31 H 1.09007 * 109.47082 * 299.99615 * 4 3 2 32 32 H 1.07998 * 119.96159 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.92631 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.95725 * 179.97438 * 8 7 6 35 35 H 1.07997 * 120.03383 * 180.02562 * 9 8 7 36 36 H 0.96999 * 120.00265 * 326.46086 * 11 10 5 37 37 H 0.97000 * 119.99725 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0721 2.8635 0.0000 6 6 4.4004 3.4813 -1.1910 7 6 4.8608 4.7851 -1.1914 8 6 4.9951 5.4747 0.0000 9 6 4.6691 4.8629 1.1942 10 6 4.2002 3.5551 1.1976 11 7 3.8643 2.9351 2.4033 12 16 4.7029 3.3001 3.7838 13 8 4.1485 2.4946 4.8149 14 8 6.0802 3.2764 3.4347 15 6 4.3233 4.9700 4.1985 16 1 3.6484 5.5406 3.5778 17 6 4.8872 5.5480 5.3161 18 7 5.7088 4.8530 6.0723 19 14 4.4854 7.3186 5.7554 20 1 3.2963 7.3504 6.6443 21 1 5.6435 7.9299 6.4557 22 1 4.1971 8.0830 4.5154 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 3.9330 0.9289 -0.8908 31 1 3.9336 0.9287 0.8892 32 1 4.2975 2.9454 -2.1229 33 1 5.1164 5.2659 -2.1240 34 1 5.3554 6.4928 -0.0038 35 1 4.7739 5.4021 2.1241 36 1 3.1398 2.2908 2.4320 37 1 6.1051 5.2596 6.8588 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -92.320207 kcal Electronic energy + Delta-G solvation = -20527.061901 eV Core-core repulsion = 17394.592501 eV Total energy + Delta-G solvation = -3132.469400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.36485 -35.72265 -35.33699 -34.32664 -34.09167 -33.19379 -32.00122 -28.97996 -27.87838 -26.32152 -24.02127 -22.16911 -21.21971 -20.60231 -18.92752 -17.77760 -17.17397 -16.27819 -15.65773 -15.24540 -14.96508 -14.45620 -14.05618 -14.00864 -13.94615 -13.41378 -13.06540 -12.88838 -12.66849 -12.22468 -12.09801 -11.67659 -11.37312 -11.26905 -11.19159 -11.13367 -10.90224 -10.71444 -10.65072 -10.61028 -10.42128 -10.40513 -10.30804 -9.97147 -9.31216 -8.89916 -8.35027 -7.59928 -6.79362 -5.42974 1.77862 1.85092 2.14759 3.02749 3.09948 3.15893 3.98466 4.18075 4.53411 4.56895 4.81447 4.93009 5.08989 5.19508 5.27860 5.42724 5.49928 5.59760 5.69686 5.71863 5.73356 5.78038 5.90643 5.96233 6.00578 6.08795 6.14831 6.24912 6.36764 6.42082 6.49773 6.68080 6.80215 6.97825 7.08360 7.21616 7.39269 7.81846 7.84562 8.77861 10.14724 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.006036 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.212379 B = 4637.877796 C = 5413.495815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.078 4.078 5 C -0.125 4.125 6 C -0.098 4.098 7 C -0.155 4.155 8 C -0.092 4.092 9 C -0.168 4.168 10 C 0.198 3.802 11 N -1.069 6.069 12 S 2.702 3.298 13 O -0.999 6.999 14 O -0.990 6.990 15 C -1.022 5.022 16 H 0.110 0.890 17 C 0.134 3.866 18 N -0.841 5.841 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.260 1.260 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.410 0.590 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 -2.506 -12.819 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.115 4.115 5 C -0.129 4.129 6 C -0.116 4.116 7 C -0.174 4.174 8 C -0.111 4.111 9 C -0.189 4.189 10 C 0.099 3.901 11 N -0.811 5.811 12 S 2.802 3.198 13 O -0.989 6.989 14 O -0.980 6.980 15 C -1.155 5.155 16 H 0.128 0.872 17 C -0.085 4.085 18 N -0.470 5.470 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.184 1.184 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.177 0.823 36 H 0.244 0.756 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.554 -3.087 -12.119 13.683 hybrid contribution -0.771 1.163 0.231 1.414 sum -6.325 -1.924 -11.888 13.602 Atomic orbital electron populations 1.21778 0.96018 1.01355 1.01868 1.21568 0.95767 0.96998 1.02078 1.21647 0.94776 0.96564 1.02514 1.20507 0.95236 0.92965 1.02843 1.19643 1.04767 0.96058 0.92425 1.20727 0.99444 0.94993 0.96479 1.20963 1.03455 0.95227 0.97776 1.20912 0.98649 0.99698 0.91826 1.21944 1.02056 0.93409 1.01449 1.17266 0.96349 0.91028 0.85416 1.54254 1.49454 1.54436 1.22952 1.01025 0.72553 0.76542 0.69656 1.93391 1.79633 1.72120 1.53793 1.93408 1.32839 1.89016 1.82706 1.30557 1.41693 1.22326 1.20901 0.87186 1.24760 0.90470 1.00467 0.92799 1.69890 1.24244 1.38524 1.14331 0.86126 0.78893 0.80943 0.79467 1.19122 1.19881 1.18412 0.92909 0.92977 0.92583 0.92120 0.91807 0.91778 0.91763 0.91087 0.91031 0.86520 0.86643 0.86012 0.82267 0.75622 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.12 -1.38 5.12 -26.73 -0.14 -1.52 16 4 C -0.08 -1.05 4.74 -27.88 -0.13 -1.18 16 5 C -0.12 -2.02 5.15 -104.42 -0.54 -2.56 16 6 C -0.10 -1.40 9.68 -39.61 -0.38 -1.78 16 7 C -0.15 -2.22 10.04 -39.54 -0.40 -2.62 16 8 C -0.09 -1.51 10.04 -39.61 -0.40 -1.91 16 9 C -0.17 -3.33 8.95 -39.38 -0.35 -3.68 16 10 C 0.20 3.85 6.17 -83.79 -0.52 3.33 16 11 N -1.07 -22.02 5.27 32.41 0.17 -21.85 16 12 S 2.70 71.28 4.63 -107.50 -0.50 70.78 16 13 O -1.00 -28.91 18.02 -57.17 -1.03 -29.94 16 14 O -0.99 -28.92 17.44 -57.17 -1.00 -29.92 16 15 C -1.02 -27.12 7.59 30.60 0.23 -26.88 16 16 H 0.11 2.65 6.87 -52.49 -0.36 2.29 16 17 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 18 N -0.84 -24.13 13.19 55.43 0.73 -23.40 16 19 Si 0.92 19.93 29.54 -169.99 -5.02 14.91 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.81 7.28 -51.93 -0.38 0.43 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 31 H 0.07 1.03 7.43 -51.93 -0.39 0.64 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.16 3.46 4.47 -52.49 -0.23 3.22 16 36 H 0.41 7.26 7.10 -34.47 -0.24 7.01 16 37 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -33.46 320.72 -9.28 -42.75 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.96 Total: 9.61 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -2.51 Total: -37.77 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.90 Total: -45.25 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -2.03 Total: -59.86 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 71.28 SS G_CDS: -0.50 Total: 70.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.46 -9.28 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.573 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds