Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 C 1.53004 * 109.47101 * 119.99828 * 2 1 3 5 5 C 1.50698 * 109.47280 * 65.00013 * 4 2 1 6 6 C 1.38116 * 120.03957 * 265.00050 * 5 4 2 7 7 C 1.38260 * 120.07744 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.15052 * 0.03723 * 7 6 5 9 9 C 1.38086 * 120.07322 * 359.97438 * 8 7 6 10 10 C 1.38891 * 120.03547 * 84.72001 * 5 4 2 11 11 N 1.39679 * 120.07829 * 0.02562 * 10 5 4 12 12 S 1.65596 * 120.00065 * 146.46266 * 11 10 5 13 13 O 1.42098 * 106.40151 * 181.25580 * 12 11 10 14 14 O 1.42099 * 106.40178 * 314.17084 * 12 11 10 15 15 C 1.76189 * 107.22137 * 67.71238 * 12 11 10 16 16 H 1.08005 * 120.00080 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00514 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99879 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00630 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46805 * 59.99891 * 19 17 15 21 21 H 1.48496 * 109.47570 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46946 * 300.00281 * 19 17 15 23 23 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46664 * 300.00149 * 1 2 3 25 25 H 1.08990 * 109.47289 * 59.99704 * 1 2 3 26 26 H 1.08999 * 109.47526 * 239.99788 * 2 1 3 27 27 H 1.08998 * 109.47599 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46780 * 300.00130 * 3 2 1 29 29 H 1.08994 * 109.47373 * 59.99784 * 3 2 1 30 30 H 1.09000 * 109.47034 * 184.99992 * 4 2 1 31 31 H 1.09000 * 109.46902 * 304.99832 * 4 2 1 32 32 H 1.08006 * 119.96443 * 359.97438 * 6 5 4 33 33 H 1.08006 * 119.92815 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.96389 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.03556 * 180.02562 * 9 8 7 36 36 H 0.96995 * 119.99514 * 326.46426 * 11 10 5 37 37 H 0.97002 * 120.00089 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1890 6 6 0.4873 -2.6000 1.8164 7 6 0.1205 -3.9320 1.7611 8 6 0.9077 -4.8415 1.0786 9 6 2.0629 -4.4217 0.4493 10 6 2.4311 -3.0829 0.4976 11 7 3.5960 -2.6538 -0.1425 12 16 4.9094 -3.6584 -0.2323 13 8 5.9263 -2.9301 -0.9067 14 8 5.0805 -4.2122 1.0651 15 6 4.4709 -4.9970 -1.2907 16 1 3.4875 -5.0337 -1.7358 17 6 5.3829 -5.9977 -1.5508 18 7 6.5803 -5.9533 -1.0084 19 14 4.9182 -7.4165 -2.6735 20 1 4.5699 -6.8903 -4.0178 21 1 6.0655 -8.3522 -2.7896 22 1 3.7496 -8.1351 -2.1051 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1263 -0.6443 1.2952 31 1 1.6054 -0.2616 2.1370 32 1 -0.1294 -1.8925 2.3508 33 1 -0.7827 -4.2630 2.2522 34 1 0.6186 -5.8813 1.0377 35 1 2.6770 -5.1324 -0.0838 36 1 3.6357 -1.7674 -0.5344 37 1 7.2219 -6.6575 -1.1911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192981953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -88.891354 kcal Electronic energy + Delta-G solvation = -20827.352792 eV Core-core repulsion = 17695.032079 eV Total energy + Delta-G solvation = -3132.320714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49291 -36.07884 -35.33550 -34.35126 -34.08803 -33.18992 -31.07936 -28.64983 -27.13492 -26.32906 -26.09037 -22.17429 -21.32044 -19.92053 -18.91506 -17.78381 -17.04258 -16.26962 -15.74713 -15.03500 -14.80412 -14.39499 -14.14857 -14.02782 -13.92846 -13.53565 -13.08751 -12.52071 -12.37139 -12.14618 -12.08899 -11.93783 -11.56017 -11.31944 -11.25605 -10.94149 -10.80482 -10.73279 -10.66700 -10.56543 -10.46708 -10.40271 -10.30543 -9.97230 -9.29990 -8.90350 -8.33042 -7.59373 -6.78932 -5.42676 1.78525 1.85481 2.15158 3.04529 3.09411 3.14622 3.98637 4.18433 4.53588 4.57482 4.88353 4.93878 5.02459 5.25603 5.37086 5.50391 5.57947 5.61625 5.65735 5.72465 5.79179 5.84072 5.94510 5.97912 6.00399 6.10923 6.20090 6.31039 6.36025 6.43620 6.50884 6.68575 6.80831 6.98386 7.08970 7.21851 7.39630 7.82233 7.84417 8.78088 10.15132 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.006283 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.129271 B = 4455.588581 C = 5121.819841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.074 4.074 5 C -0.121 4.121 6 C -0.096 4.096 7 C -0.156 4.156 8 C -0.092 4.092 9 C -0.168 4.168 10 C 0.198 3.802 11 N -1.069 6.069 12 S 2.703 3.297 13 O -0.999 6.999 14 O -0.990 6.990 15 C -1.022 5.022 16 H 0.109 0.891 17 C 0.134 3.866 18 N -0.841 5.841 19 Si 0.922 3.078 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.262 1.262 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.410 0.590 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 7.354 2.029 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.111 4.111 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.175 4.175 8 C -0.111 4.111 9 C -0.188 4.188 10 C 0.099 3.901 11 N -0.811 5.811 12 S 2.803 3.197 13 O -0.989 6.989 14 O -0.980 6.980 15 C -1.155 5.155 16 H 0.128 0.872 17 C -0.085 4.085 18 N -0.470 5.470 19 Si 0.745 3.255 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.186 1.186 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.177 0.823 36 H 0.244 0.756 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.326 7.312 2.564 13.723 hybrid contribution -0.526 -0.680 -1.127 1.417 sum -11.852 6.633 1.437 13.657 Atomic orbital electron populations 1.21861 0.95150 1.02224 1.01067 1.21137 0.96232 0.95778 0.98370 1.21865 1.01245 0.95921 1.01529 1.20572 1.01360 0.91156 0.98026 1.19605 0.97139 0.95348 1.00469 1.20721 0.95753 0.95655 0.99359 1.20958 1.00612 0.93492 1.02420 1.20906 0.94201 0.99312 0.96695 1.21938 0.98714 0.95628 1.02565 1.17263 0.86952 0.93030 0.92842 1.54251 1.28314 1.30603 1.67923 1.00996 0.70216 0.73673 0.74805 1.93391 1.54690 1.74488 1.76374 1.93407 1.83961 1.78447 1.42136 1.30531 1.09698 1.26415 1.48867 0.87248 1.24751 0.92827 0.97811 0.93079 1.69883 1.04966 1.34140 1.38022 0.86171 0.79115 0.79664 0.80528 1.18766 1.20043 1.18624 0.91988 0.92990 0.93163 0.91034 0.92473 0.92749 0.92778 0.91004 0.91061 0.86552 0.86687 0.86057 0.82307 0.75644 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.84 37.16 0.33 -1.22 16 2 C -0.10 -1.14 2.80 -90.62 -0.25 -1.40 16 3 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 4 C -0.07 -0.99 4.22 -27.88 -0.12 -1.11 16 5 C -0.12 -1.94 4.58 -104.43 -0.48 -2.42 16 6 C -0.10 -1.35 8.35 -39.62 -0.33 -1.68 16 7 C -0.16 -2.20 10.04 -39.55 -0.40 -2.60 16 8 C -0.09 -1.51 10.04 -39.61 -0.40 -1.90 16 9 C -0.17 -3.30 8.95 -39.38 -0.35 -3.66 16 10 C 0.20 3.81 6.17 -83.78 -0.52 3.29 16 11 N -1.07 -21.91 5.27 32.41 0.17 -21.74 16 12 S 2.70 71.07 4.63 -107.50 -0.50 70.57 16 13 O -1.00 -28.85 18.02 -57.17 -1.03 -29.88 16 14 O -0.99 -28.81 17.44 -57.17 -1.00 -29.81 16 15 C -1.02 -27.09 7.59 30.60 0.23 -26.85 16 16 H 0.11 2.63 6.87 -52.48 -0.36 2.27 16 17 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 18 N -0.84 -24.14 13.19 55.43 0.73 -23.41 16 19 Si 0.92 19.95 29.54 -169.99 -5.02 14.92 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 H 0.06 0.71 6.51 -51.93 -0.34 0.38 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.93 7.37 -51.93 -0.38 0.54 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.03 7.43 -51.93 -0.39 0.65 16 31 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.16 3.43 4.47 -52.49 -0.23 3.20 16 36 H 0.41 7.23 7.16 -34.47 -0.25 6.99 16 37 H 0.29 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -33.31 316.70 -8.80 -42.10 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.88 Total: 9.65 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: -2.04 Total: -37.19 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.90 Total: -45.15 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -2.03 Total: -59.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 71.07 SS G_CDS: -0.50 Total: 70.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.31 -8.80 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192981953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.787 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds