Wall clock time and date at job start Tue Mar 31 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47556 * 2 1 4 4 C 1.52994 * 109.47428 * 239.99751 * 2 1 3 5 5 C 1.50697 * 109.47393 * 185.00248 * 4 2 1 6 6 C 1.38279 * 119.92800 * 269.72495 * 5 4 2 7 7 C 1.38100 * 120.07881 * 179.72496 * 6 5 4 8 8 C 1.38910 * 119.92277 * 0.54947 * 7 6 5 9 9 N 1.39677 * 120.07552 * 179.70762 * 8 7 6 10 10 S 1.65602 * 119.99748 * 313.83118 * 9 8 7 11 11 O 1.42097 * 106.40253 * 51.99316 * 10 9 8 12 12 O 1.42098 * 106.40065 * 184.91233 * 10 9 8 13 13 C 1.76203 * 107.21711 * 298.45141 * 10 9 8 14 14 H 1.07990 * 119.99951 * 4.90533 * 13 10 9 15 15 C 1.37880 * 119.99892 * 184.89799 * 13 10 9 16 16 N 1.31518 * 119.99914 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00106 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46760 * 90.00430 * 17 15 13 19 19 H 1.48490 * 109.47217 * 210.00363 * 17 15 13 20 20 H 1.48500 * 109.47090 * 330.00747 * 17 15 13 21 21 C 1.38912 * 119.85091 * 359.72180 * 8 7 6 22 22 C 1.38102 * 119.92519 * 0.02562 * 21 8 7 23 23 H 1.09001 * 109.46556 * 60.00178 * 1 2 3 24 24 H 1.08993 * 109.47150 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47051 * 300.00640 * 1 2 3 26 26 H 1.09005 * 109.47050 * 119.99805 * 2 1 3 27 27 H 1.08998 * 109.47336 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46782 * 299.99969 * 3 2 1 29 29 H 1.09006 * 109.47209 * 59.99154 * 3 2 1 30 30 H 1.09005 * 109.46962 * 305.00191 * 4 2 1 31 31 H 1.09000 * 109.47274 * 64.99687 * 4 2 1 32 32 H 1.08006 * 119.96148 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04316 * 180.27717 * 7 6 5 34 34 H 0.97001 * 119.99828 * 133.83131 * 9 8 7 35 35 H 0.96998 * 120.00195 * 179.97438 * 16 15 13 36 36 H 1.07994 * 120.03757 * 179.97438 * 21 8 7 37 37 H 1.07997 * 119.96455 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.8294 -1.1887 6 6 4.3280 0.1696 -1.7329 7 6 5.7046 0.0764 -1.6743 8 6 6.2996 -1.0281 -1.0779 9 7 7.6916 -1.1286 -1.0222 10 16 8.5994 -0.8081 -2.3697 11 8 8.1820 0.4658 -2.8410 12 8 9.9456 -1.1072 -2.0270 13 6 8.1294 -1.9739 -3.6045 14 1 7.3172 -2.6607 -3.4175 15 6 8.7986 -2.0093 -4.8096 16 7 9.7879 -1.1731 -5.0371 17 14 8.3009 -3.2456 -6.1184 18 1 7.2629 -2.6470 -6.9956 19 1 9.4880 -3.6089 -6.9331 20 1 7.7559 -4.4638 -5.4669 21 6 5.5070 -2.0327 -0.5371 22 6 4.1309 -1.9306 -0.5946 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6054 -1.7198 -1.2950 31 1 1.7517 -0.1584 -2.1369 32 1 3.8648 1.0258 -2.2009 33 1 6.3180 0.8591 -2.0956 34 1 8.1266 -1.3861 -0.1943 35 1 10.2589 -1.1982 -5.8847 36 1 5.9663 -2.8929 -0.0731 37 1 3.5141 -2.7114 -0.1747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:16 Heat of formation + Delta-G solvation = -90.841663 kcal Electronic energy + Delta-G solvation = -20188.828201 eV Core-core repulsion = 17056.422915 eV Total energy + Delta-G solvation = -3132.405285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34615 -36.59399 -35.31586 -34.10598 -33.97943 -33.10025 -30.54732 -29.70071 -27.20183 -26.17287 -25.50324 -22.43900 -21.26758 -19.92431 -19.10482 -17.68137 -17.04796 -16.26991 -15.66222 -15.05604 -14.93926 -14.42232 -14.25886 -13.96364 -13.88849 -13.43828 -13.00414 -12.89143 -12.39803 -12.27732 -12.05773 -11.96519 -11.60810 -11.32195 -11.23339 -11.12954 -10.95351 -10.70498 -10.62042 -10.60049 -10.48029 -10.41574 -10.11485 -9.66426 -9.27563 -8.88033 -8.51753 -7.66637 -6.73834 -5.36117 1.66741 1.81636 2.23884 3.06184 3.12606 3.19599 4.03502 4.11726 4.55991 4.64813 4.80732 4.84112 4.93394 5.22908 5.32135 5.40375 5.49298 5.57740 5.62035 5.69230 5.77394 5.84355 5.85032 5.89672 5.92077 6.06225 6.14542 6.27823 6.32387 6.41305 6.53031 6.63058 6.78149 6.97022 7.10805 7.28556 7.38387 7.84439 7.94861 8.85327 10.20239 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023342 B = 0.004777 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.248434 B = 5860.232699 C = 6391.943228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.071 4.071 5 C -0.109 4.109 6 C -0.094 4.094 7 C -0.146 4.146 8 C 0.174 3.826 9 N -1.077 6.077 10 S 2.706 3.294 11 O -0.999 6.999 12 O -0.996 6.996 13 C -1.013 5.013 14 H 0.104 0.896 15 C 0.134 3.866 16 N -0.845 5.845 17 Si 0.922 3.078 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.262 1.262 21 C -0.143 4.143 22 C -0.104 4.104 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.411 0.589 35 H 0.292 0.708 36 H 0.122 0.878 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -0.033 8.221 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.166 4.166 8 C 0.077 3.923 9 N -0.821 5.821 10 S 2.807 3.193 11 O -0.989 6.989 12 O -0.987 6.987 13 C -1.147 5.147 14 H 0.122 0.878 15 C -0.084 4.084 16 N -0.474 5.474 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.165 4.165 22 C -0.123 4.123 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.175 0.825 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.255 0.811 7.906 16.321 hybrid contribution -0.258 -1.368 -0.558 1.500 sum -14.514 -0.557 7.348 16.277 Atomic orbital electron populations 1.21857 0.95498 1.01491 1.01594 1.21088 0.94989 0.96671 0.98225 1.21930 1.02149 0.95600 1.01208 1.20603 0.91464 1.00755 0.98021 1.19730 0.95147 0.95479 1.00607 1.20861 0.92887 0.98421 0.99100 1.21977 0.95786 0.97899 1.00984 1.17432 0.82978 0.93338 0.98561 1.54008 1.13053 1.85362 1.29670 1.00836 0.71464 0.75107 0.71844 1.93316 1.82450 1.43358 1.79812 1.93388 1.35037 1.86359 1.83871 1.30411 1.29881 1.38267 1.16163 0.87799 1.24738 0.91392 0.94387 0.97915 1.69894 1.17924 1.33368 1.26260 0.86134 0.78935 0.80673 0.79700 1.19071 1.19912 1.18604 1.21109 0.93681 0.98013 1.03680 1.20736 0.93969 0.97612 0.99973 0.92737 0.92852 0.92902 0.91220 0.91700 0.92812 0.93220 0.91396 0.91224 0.86073 0.82543 0.75586 0.89801 0.85997 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.87 2.91 -90.62 -0.26 -1.14 16 3 C -0.15 -1.50 8.77 37.16 0.33 -1.17 16 4 C -0.07 -0.77 4.84 -27.89 -0.13 -0.90 16 5 C -0.11 -1.51 4.71 -104.59 -0.49 -2.00 16 6 C -0.09 -1.48 7.97 -39.62 -0.32 -1.80 16 7 C -0.15 -2.79 9.23 -39.38 -0.36 -3.15 16 8 C 0.17 3.32 6.13 -83.79 -0.51 2.81 16 9 N -1.08 -21.96 5.77 32.41 0.19 -21.78 16 10 S 2.71 71.39 4.94 -107.50 -0.53 70.86 16 11 O -1.00 -28.16 15.15 -57.17 -0.87 -29.02 16 12 O -1.00 -28.98 17.91 -57.17 -1.02 -30.01 16 13 C -1.01 -28.06 9.61 30.60 0.29 -27.77 16 14 H 0.10 2.70 7.81 -52.49 -0.41 2.29 16 15 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 16 N -0.84 -24.70 13.10 55.43 0.73 -23.97 16 17 Si 0.92 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 21 C -0.14 -2.30 9.97 -39.38 -0.39 -2.69 16 22 C -0.10 -1.46 9.69 -39.61 -0.38 -1.85 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.74 6.28 -51.93 -0.33 0.41 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.12 1.65 8.05 -52.48 -0.42 1.23 16 33 H 0.16 3.33 5.71 -52.49 -0.30 3.03 16 34 H 0.41 7.03 8.96 -34.48 -0.31 6.72 16 35 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -33.53 322.46 -8.79 -42.32 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.12 Total: 7.90 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: -2.00 Total: -36.85 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.91 Total: -45.75 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -1.89 Total: -59.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 71.39 SS G_CDS: -0.53 Total: 70.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.53 -8.79 -42.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.519 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds