Wall clock time and date at job start Tue Mar 31 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 N 1.46496 * 109.47233 * 60.00037 * 4 2 1 6 6 S 1.65603 * 120.00200 * 165.00008 * 5 4 2 7 7 O 1.42095 * 106.40144 * 178.53848 * 6 5 4 8 8 O 1.42097 * 106.40101 * 311.46156 * 6 5 4 9 9 C 1.76196 * 107.21785 * 64.99942 * 6 5 4 10 10 H 1.07999 * 120.00244 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00260 * 180.02562 * 9 6 5 12 12 N 1.31513 * 119.99669 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00286 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.46940 * 59.99888 * 13 11 9 15 15 H 1.48501 * 109.47226 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46992 * 300.00077 * 13 11 9 17 17 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 18 18 C 1.38237 * 119.99761 * 300.00365 * 17 2 1 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 2 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00191 * 119.97467 * 17 2 1 23 23 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 24 24 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 25 25 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 28 28 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 29 29 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 31 31 H 0.97003 * 119.99663 * 345.00189 * 5 4 2 32 32 H 0.97002 * 120.00151 * 180.02562 * 12 11 9 33 33 H 1.08005 * 120.00088 * 359.96779 * 18 17 2 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99990 * 0.02562 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 16 2.2317 -0.3495 -3.9213 7 8 1.5257 0.4411 -4.8676 8 8 3.6389 -0.2725 -3.7397 9 6 1.8714 -2.0300 -4.3094 10 1 1.2993 -2.6329 -3.6197 11 6 2.3199 -2.5755 -5.4936 12 7 3.0162 -1.8413 -6.3336 13 14 1.9374 -4.3569 -5.9054 14 1 0.4656 -4.5479 -5.9571 15 1 2.5269 -4.6975 -7.2251 16 1 2.5149 -5.2413 -4.8616 17 6 2.0324 -0.7104 1.2305 18 6 1.6984 -0.2382 2.4860 19 6 2.1588 -0.8902 3.6147 20 6 2.9523 -2.0150 3.4878 21 6 3.2903 -2.4844 2.2323 22 6 2.8267 -1.8346 1.1036 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6768 1.9564 0.8900 29 1 3.1300 -0.7216 -1.2490 30 1 1.6766 -1.7489 -1.2492 31 1 0.8300 0.6134 -2.3728 32 1 3.3314 -2.2249 -7.1669 33 1 1.0778 0.6402 2.5851 34 1 1.8982 -0.5210 4.5956 35 1 3.3117 -2.5245 4.3697 36 1 3.9138 -3.3606 2.1332 37 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:46 Heat of formation + Delta-G solvation = -80.674702 kcal Electronic energy + Delta-G solvation = -20481.317188 eV Core-core repulsion = 17349.352775 eV Total energy + Delta-G solvation = -3131.964413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86103 -36.87703 -35.14840 -33.91382 -33.11333 -32.58010 -30.95871 -29.50271 -27.14224 -26.12574 -25.76236 -22.71015 -22.05949 -19.19897 -18.96723 -17.64148 -16.75702 -16.16138 -15.58760 -15.04289 -14.71820 -14.59108 -14.33089 -13.88952 -13.76371 -13.44939 -13.28215 -13.00999 -12.86811 -12.11470 -11.97315 -11.84458 -11.74013 -11.36964 -11.23326 -11.18977 -10.94563 -10.71918 -10.60909 -10.48861 -10.25467 -10.15911 -10.08984 -9.22052 -8.99937 -8.87418 -8.65663 -8.43864 -6.67920 -5.29752 1.39446 1.43627 2.38351 3.09529 3.14066 3.19762 3.81910 4.07852 4.58644 4.66067 4.73344 4.91869 5.00762 5.10472 5.12708 5.16577 5.33132 5.51107 5.60111 5.73328 5.80552 5.87284 5.92587 5.95482 6.08295 6.09375 6.13429 6.21199 6.27327 6.42655 6.48232 6.53205 6.60890 6.71000 6.88962 7.03924 7.34265 7.93269 8.00407 8.91107 10.26218 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.005149 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.141145 B = 5437.021419 C = 6167.048441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.138 4.138 4 C 0.136 3.864 5 N -1.135 6.135 6 S 2.716 3.284 7 O -1.008 7.008 8 O -1.007 7.007 9 C -1.021 5.021 10 H 0.101 0.899 11 C 0.133 3.867 12 N -0.846 5.846 13 Si 0.920 3.080 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.061 4.061 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.400 0.600 32 H 0.291 0.709 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 0.466 17.218 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.195 4.195 4 C 0.008 3.992 5 N -0.891 5.891 6 S 2.816 3.184 7 O -0.999 6.999 8 O -0.997 6.997 9 C -1.155 5.155 10 H 0.120 0.880 11 C -0.085 4.085 12 N -0.475 5.475 13 Si 0.744 3.256 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.189 1.189 17 C -0.062 4.062 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.403 1.009 16.517 16.722 hybrid contribution -0.742 -1.321 -0.037 1.516 sum -3.145 -0.313 16.481 16.781 Atomic orbital electron populations 1.21880 0.93364 1.02447 1.01827 1.19728 0.96154 0.95754 0.91966 1.21871 1.01721 0.94110 1.01783 1.21205 0.99271 0.95091 0.83598 1.56008 1.52518 1.56276 1.24285 1.00330 0.72546 0.76076 0.69442 1.93371 1.74854 1.72560 1.59071 1.93354 1.32406 1.88951 1.85027 1.30540 1.48771 1.22488 1.13653 0.88047 1.24735 0.90028 1.00250 0.93464 1.69890 1.29538 1.38020 1.10086 0.86218 0.79630 0.81648 0.78150 1.18909 1.20146 1.18889 1.19793 0.96974 0.95285 0.94130 1.20944 1.00464 1.00058 0.91887 1.21072 0.98581 0.96184 0.98241 1.21105 0.99242 0.97131 0.97342 1.21173 0.99832 0.99940 0.92527 1.21374 0.97455 0.95424 0.99544 0.92580 0.91762 0.92151 0.92118 0.91692 0.92714 0.90452 0.91972 0.76748 0.89872 0.86257 0.86467 0.86519 0.86099 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.12 37.16 0.30 -1.33 16 2 C -0.03 -0.46 0.62 -155.66 -0.10 -0.56 16 3 C -0.14 -1.75 8.12 37.16 0.30 -1.45 16 4 C 0.14 2.28 3.77 -4.05 -0.02 2.27 16 5 N -1.14 -21.96 5.33 -10.62 -0.06 -22.01 16 6 S 2.72 71.31 5.02 -107.50 -0.54 70.77 16 7 O -1.01 -29.42 18.02 -57.17 -1.03 -30.46 16 8 O -1.01 -29.23 17.49 -57.17 -1.00 -30.23 16 9 C -1.02 -27.89 9.72 30.60 0.30 -27.59 16 10 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 11 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 12 N -0.85 -24.92 13.19 55.43 0.73 -24.19 16 13 Si 0.92 20.56 29.54 -169.99 -5.02 15.54 16 14 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 17 C -0.06 -0.78 4.76 -104.62 -0.50 -1.28 16 18 C -0.12 -1.29 8.71 -39.58 -0.34 -1.63 16 19 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 20 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.58 8.98 -39.58 -0.36 -1.93 16 23 H 0.06 0.56 7.39 -51.92 -0.38 0.18 16 24 H 0.06 0.76 6.60 -51.93 -0.34 0.41 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.84 7.20 -51.93 -0.37 0.47 16 28 H 0.05 0.58 7.39 -51.93 -0.38 0.19 16 29 H 0.08 1.38 7.12 -51.93 -0.37 1.01 16 30 H 0.06 1.01 7.51 -51.93 -0.39 0.62 16 31 H 0.40 6.72 6.47 -34.48 -0.22 6.49 16 32 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.12 1.13 7.10 -52.48 -0.37 0.76 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.78 5.90 -52.49 -0.31 1.48 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -34.73 317.56 -8.64 -43.37 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.81 Total: 7.46 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: -1.70 Total: -35.04 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.67 Total: -46.20 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -2.03 Total: -60.68 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 71.31 SS G_CDS: -0.54 Total: 70.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.73 -8.64 -43.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.304 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds