Wall clock time and date at job start Tue Mar 31 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.53002 * 109.47265 * 184.55396 * 3 2 1 5 5 H 1.08996 * 109.47304 * 305.40932 * 4 3 2 6 6 N 1.46496 * 109.47070 * 65.41282 * 4 3 2 7 7 S 1.65595 * 119.99963 * 215.36927 * 6 4 3 8 8 O 1.42101 * 106.40347 * 310.14928 * 7 6 4 9 9 O 1.42103 * 106.40304 * 177.23315 * 7 6 4 10 10 C 1.76198 * 107.21999 * 63.68819 * 7 6 4 11 11 H 1.07995 * 119.99808 * 11.17249 * 10 7 6 12 12 C 1.37880 * 120.00189 * 191.16420 * 10 7 6 13 13 N 1.31518 * 119.99730 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00118 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.46846 * 60.00494 * 14 12 10 16 16 H 1.48498 * 109.46967 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47287 * 300.00342 * 14 12 10 18 18 C 1.50703 * 109.47053 * 185.40668 * 4 3 2 19 19 C 1.38226 * 120.00264 * 279.72998 * 18 4 3 20 20 C 1.38241 * 120.00006 * 179.78486 * 19 18 4 21 21 C 1.38236 * 119.99989 * 0.44576 * 20 19 18 22 22 C 1.38237 * 119.99638 * 359.80638 * 21 20 19 23 23 C 1.38235 * 120.00428 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47314 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47520 * 299.99946 * 1 2 3 26 26 H 1.09004 * 109.47564 * 60.00335 * 1 2 3 27 27 H 1.09001 * 109.47520 * 240.00054 * 2 1 3 28 28 H 1.09006 * 109.46867 * 119.99893 * 2 1 3 29 29 H 1.09002 * 109.47378 * 64.55313 * 3 2 1 30 30 H 1.09000 * 109.47121 * 304.55907 * 3 2 1 31 31 H 0.97000 * 120.00014 * 35.36577 * 6 4 3 32 32 H 0.96996 * 119.99994 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.00542 * 359.97438 * 19 18 4 34 34 H 1.08001 * 119.99879 * 180.27400 * 20 19 18 35 35 H 1.07992 * 120.00069 * 179.83342 * 21 20 19 36 36 H 1.08003 * 119.99535 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5656 1.4440 -0.1145 5 1 3.9901 0.8270 0.6774 6 7 3.9580 0.9032 -1.4183 7 16 5.3310 -0.0123 -1.5557 8 8 6.3678 0.7210 -0.9180 9 8 5.3980 -0.4343 -2.9110 10 6 5.0862 -1.4675 -0.5929 11 1 4.1048 -1.7010 -0.2073 12 6 6.1474 -2.3082 -0.3320 13 7 7.3425 -2.0236 -0.8014 14 14 5.8879 -3.8506 0.6893 15 1 4.8930 -4.7261 0.0195 16 1 7.1757 -4.5779 0.8233 17 1 5.3888 -3.4743 2.0362 18 6 4.0780 2.8550 0.0188 19 6 4.0355 3.7111 -1.0656 20 6 4.5014 5.0067 -0.9421 21 6 5.0182 5.4434 0.2634 22 6 5.0655 4.5855 1.3464 23 6 4.5955 3.2913 1.2241 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 1.7448 1.9322 0.9280 30 1 1.6114 1.9793 -0.8463 31 1 3.4135 1.0814 -2.2010 32 1 8.0892 -2.6149 -0.6176 33 1 3.6355 3.3688 -2.0086 34 1 4.4641 5.6770 -1.7881 35 1 5.3847 6.4547 0.3592 36 1 5.4697 4.9266 2.2881 37 1 4.6328 2.6211 2.0701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:26 Heat of formation + Delta-G solvation = -86.883723 kcal Electronic energy + Delta-G solvation = -20766.821615 eV Core-core repulsion = 17634.587959 eV Total energy + Delta-G solvation = -3132.233656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.19662 -36.37757 -35.11059 -33.87186 -33.16903 -32.85464 -30.69601 -30.26455 -27.63887 -26.10979 -23.74297 -22.28638 -21.08313 -20.34231 -18.97451 -17.43712 -16.74035 -16.10053 -15.51616 -15.13088 -14.89074 -14.54386 -14.18914 -13.96521 -13.48245 -13.35813 -13.10044 -13.01827 -12.44693 -12.19241 -11.98274 -11.66709 -11.28508 -11.23373 -11.19631 -10.94904 -10.71623 -10.66209 -10.60281 -10.42249 -10.24509 -10.17096 -10.07074 -9.22117 -9.01430 -8.59863 -8.53546 -8.32374 -6.66719 -5.29684 1.67685 1.73933 2.40224 3.08459 3.13586 3.18889 4.05826 4.11128 4.66139 4.81510 4.89251 5.16733 5.21577 5.25901 5.29523 5.37329 5.46324 5.63385 5.75971 5.79607 5.83339 5.90321 5.95434 6.05003 6.13778 6.24808 6.31421 6.34092 6.41011 6.57709 6.63238 6.76324 6.77849 6.80054 7.09881 7.32831 7.35132 7.94196 7.99054 8.91102 10.26516 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.006933 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.353368 B = 4037.882676 C = 4807.900536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.115 4.115 4 C 0.199 3.801 5 H 0.099 0.901 6 N -1.127 6.127 7 S 2.710 3.290 8 O -0.992 6.992 9 O -1.016 7.016 10 C -1.021 5.021 11 H 0.103 0.897 12 C 0.133 3.867 13 N -0.841 5.841 14 Si 0.917 3.083 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.080 4.080 19 C -0.103 4.103 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.290 0.710 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 8.871 4.286 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.154 4.154 4 C 0.090 3.910 5 H 0.117 0.883 6 N -0.880 5.880 7 S 2.810 3.190 8 O -0.982 6.982 9 O -1.007 7.007 10 C -1.154 5.154 11 H 0.121 0.879 12 C -0.085 4.085 13 N -0.471 5.471 14 Si 0.741 3.259 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.082 4.082 19 C -0.122 4.122 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.124 4.124 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.202 9.044 3.901 13.480 hybrid contribution -0.530 -1.104 0.550 1.342 sum -9.732 7.941 4.451 13.326 Atomic orbital electron populations 1.21764 0.96367 1.01316 1.01231 1.21590 0.95054 0.96644 1.03523 1.21863 0.93836 0.97416 1.02261 1.19513 0.94596 0.90280 0.86586 0.88316 1.56148 1.47676 1.70251 1.13891 1.00566 0.70375 0.74207 0.73841 1.93382 1.53932 1.73596 1.77293 1.93375 1.85576 1.83321 1.38388 1.30559 1.03305 1.28693 1.52888 0.87923 1.24731 0.93163 0.98165 0.92426 1.69925 1.00656 1.37458 1.39014 0.86261 0.78498 0.80757 0.80424 1.18881 1.20188 1.18881 1.20397 0.97932 0.96176 0.93717 1.20909 0.99700 0.93235 0.98328 1.21069 0.99743 0.96092 0.97455 1.21038 1.00704 0.99464 0.93545 1.21050 1.00225 0.94072 0.98645 1.21024 0.98056 0.95876 0.97454 0.92954 0.93181 0.93037 0.90742 0.91570 0.91228 0.91606 0.76968 0.89950 0.86389 0.86572 0.86696 0.86440 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.15 0.37 -1.28 16 2 C -0.13 -1.75 5.88 -26.74 -0.16 -1.91 16 3 C -0.11 -1.51 4.79 -26.73 -0.13 -1.64 16 4 C 0.20 3.35 2.37 -69.08 -0.16 3.19 16 5 H 0.10 1.79 7.64 -51.93 -0.40 1.39 16 6 N -1.13 -21.65 4.16 -5.88 -0.02 -21.67 16 7 S 2.71 70.92 5.06 -107.50 -0.54 70.37 16 8 O -0.99 -28.98 17.38 -57.17 -0.99 -29.98 16 9 O -1.02 -29.65 18.02 -57.17 -1.03 -30.68 16 10 C -1.02 -27.39 9.49 30.60 0.29 -27.09 16 11 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 12 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 13 N -0.84 -24.69 12.85 55.43 0.71 -23.98 16 14 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 15 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 18 C -0.08 -1.35 4.96 -104.62 -0.52 -1.86 16 19 C -0.10 -1.63 9.33 -39.58 -0.37 -2.00 16 20 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 24 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.11 7.65 -51.93 -0.40 0.71 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.40 6.58 8.62 -34.47 -0.30 6.28 16 32 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.12 1.70 7.54 -52.49 -0.40 1.31 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -34.95 328.95 -9.55 -44.50 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.26 Total: 8.68 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: -2.35 Total: -37.54 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.69 Total: -45.65 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -2.02 Total: -60.65 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 70.92 SS G_CDS: -0.54 Total: 70.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.95 -9.55 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.384 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds