Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 C 1.52996 * 109.47122 * 175.31786 * 3 2 1 5 5 H 1.08993 * 109.47150 * 54.67514 * 4 3 2 6 6 N 1.46501 * 109.47177 * 294.67800 * 4 3 2 7 7 S 1.65604 * 120.00062 * 144.21501 * 6 4 3 8 8 O 1.42104 * 106.40003 * 177.66848 * 7 6 4 9 9 O 1.42097 * 106.40200 * 310.58835 * 7 6 4 10 10 C 1.76195 * 107.21700 * 64.12792 * 7 6 4 11 11 H 1.08004 * 120.00604 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00009 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00006 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00103 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47500 * 59.99768 * 14 12 10 16 16 H 1.48503 * 109.47001 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46730 * 299.99548 * 14 12 10 18 18 C 1.50698 * 109.47267 * 174.67660 * 4 3 2 19 19 C 1.38242 * 119.99673 * 79.72595 * 18 4 3 20 20 C 1.38234 * 119.99696 * 179.79534 * 19 18 4 21 21 C 1.38240 * 119.99999 * 0.43264 * 20 19 18 22 22 C 1.38231 * 119.99815 * 359.82094 * 21 20 19 23 23 C 1.38227 * 120.00191 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47335 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47685 * 299.99723 * 1 2 3 27 27 H 1.08999 * 109.47913 * 239.99529 * 2 1 3 28 28 H 1.09003 * 109.47335 * 119.99719 * 2 1 3 29 29 H 1.08998 * 109.47036 * 55.31754 * 3 2 1 30 30 H 1.08991 * 109.46876 * 295.31768 * 3 2 1 31 31 H 0.97001 * 120.00085 * 323.94001 * 6 4 3 32 32 H 0.96992 * 119.99856 * 179.97438 * 13 12 10 33 33 H 1.07997 * 120.00164 * 0.02562 * 19 18 4 34 34 H 1.07999 * 120.00087 * 180.27682 * 20 19 18 35 35 H 1.08001 * 119.99517 * 179.83230 * 21 20 19 36 36 H 1.08003 * 119.99955 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.99944 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5654 1.4442 0.1177 5 1 3.9915 0.8278 -0.6737 6 7 3.9551 0.9024 1.4219 7 16 5.3224 -0.0217 1.5596 8 8 5.4526 -0.3428 2.9377 9 8 5.2471 -1.0048 0.5363 10 6 6.6924 1.0108 1.1577 11 1 6.5292 2.0437 0.8874 12 6 7.9728 0.5003 1.1882 13 7 8.1716 -0.7573 1.5179 14 14 9.4253 1.5952 0.7628 15 1 9.4737 2.7418 1.7052 16 1 10.6830 0.8130 0.8706 17 1 9.2739 2.1012 -0.6251 18 6 4.0779 2.8552 -0.0135 19 6 4.0226 3.7140 1.0684 20 6 4.4966 5.0071 0.9493 21 6 5.0176 5.4441 -0.2542 22 6 5.0680 4.5870 -1.3375 23 6 4.5980 3.2927 -1.2172 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6097 1.9800 0.8451 30 1 1.7467 1.9315 -0.9289 31 1 3.4144 1.0882 2.2055 32 1 9.0723 -1.1165 1.5390 33 1 3.6126 3.3736 2.0078 34 1 4.4576 5.6767 1.7958 35 1 5.3855 6.4553 -0.3480 36 1 5.4747 4.9285 -2.2779 37 1 4.6370 2.6231 -2.0637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -87.319318 kcal Electronic energy + Delta-G solvation = -20889.092582 eV Core-core repulsion = 17756.840037 eV Total energy + Delta-G solvation = -3132.252545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.21407 -36.40022 -35.12133 -33.90961 -33.09568 -32.95522 -30.69260 -30.25030 -27.67019 -26.04355 -23.75470 -22.28112 -21.10451 -20.34120 -18.95929 -17.46308 -16.72620 -16.16765 -15.47338 -15.06647 -14.97023 -14.53419 -14.18846 -13.94738 -13.54322 -13.36888 -13.10278 -13.02554 -12.46335 -12.21794 -11.97851 -11.69449 -11.30843 -11.16429 -11.14640 -10.96992 -10.71421 -10.66106 -10.57684 -10.47703 -10.24854 -10.22801 -10.14077 -9.18217 -9.02714 -8.59230 -8.53303 -8.31691 -6.64547 -5.24201 1.67064 1.74672 2.39611 3.12065 3.15779 3.22850 4.07353 4.13171 4.69861 4.80835 4.86671 5.15720 5.21372 5.23916 5.28363 5.36892 5.45613 5.60231 5.75326 5.81303 5.83115 5.86416 5.92961 6.01487 6.14251 6.20943 6.29637 6.34537 6.37128 6.57627 6.57912 6.75977 6.78455 6.81420 7.09558 7.32886 7.39525 7.92275 8.08264 8.96630 10.29795 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.008867 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.029926 B = 3157.056327 C = 4684.525118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.114 4.114 4 C 0.196 3.804 5 H 0.100 0.900 6 N -1.127 6.127 7 S 2.713 3.287 8 O -1.009 7.009 9 O -1.007 7.007 10 C -1.013 5.013 11 H 0.104 0.896 12 C 0.136 3.864 13 N -0.849 5.849 14 Si 0.915 3.085 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.086 4.086 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.108 4.108 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.290 0.710 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 9.381 -4.573 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.153 4.153 4 C 0.088 3.912 5 H 0.118 0.882 6 N -0.879 5.879 7 S 2.813 3.187 8 O -0.999 6.999 9 O -0.997 6.997 10 C -1.147 5.147 11 H 0.123 0.877 12 C -0.082 4.082 13 N -0.479 5.479 14 Si 0.740 3.260 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.985 8.222 -4.447 13.677 hybrid contribution 1.039 1.303 0.005 1.667 sum -8.946 9.525 -4.442 13.801 Atomic orbital electron populations 1.21770 0.96271 1.01338 1.01328 1.21555 0.95065 0.96705 1.03289 1.21848 0.93812 0.97315 1.02334 1.19537 0.94793 0.90187 0.86720 0.88171 1.56092 1.45876 1.72177 1.13777 1.00449 0.72134 0.73206 0.72900 1.93372 1.86259 1.84170 1.36112 1.93356 1.86874 1.59208 1.60225 1.30536 1.09135 1.12605 1.62415 0.87729 1.24697 0.99618 0.94663 0.89221 1.69893 1.25403 1.13331 1.39236 0.86274 0.79285 0.80486 0.79988 1.18947 1.20246 1.18844 1.20410 0.98311 0.96255 0.93795 1.20919 0.99262 0.93083 0.98327 1.21077 0.99536 0.96205 0.97397 1.21048 1.00574 0.99455 0.93563 1.21043 1.00312 0.94102 0.98657 1.21024 0.98261 0.95908 0.97429 0.93067 0.92944 0.93000 0.91530 0.91279 0.91549 0.91130 0.76826 0.89980 0.86196 0.86543 0.86747 0.86498 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.15 0.37 -1.24 16 2 C -0.13 -1.72 5.88 -26.73 -0.16 -1.88 16 3 C -0.11 -1.49 4.79 -26.73 -0.13 -1.62 16 4 C 0.20 3.28 2.49 -69.08 -0.17 3.11 16 5 H 0.10 1.82 7.39 -51.93 -0.38 1.44 16 6 N -1.13 -21.60 4.17 -5.89 -0.02 -21.63 16 7 S 2.71 71.20 4.99 -107.50 -0.54 70.66 16 8 O -1.01 -29.57 18.02 -57.17 -1.03 -30.60 16 9 O -1.01 -28.96 17.39 -57.17 -0.99 -29.95 16 10 C -1.01 -27.85 9.70 30.60 0.30 -27.56 16 11 H 0.10 2.70 7.08 -52.48 -0.37 2.33 16 12 C 0.14 3.82 5.46 -17.82 -0.10 3.72 16 13 N -0.85 -25.20 13.19 55.43 0.73 -24.47 16 14 Si 0.92 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.09 -1.40 4.23 -104.62 -0.44 -1.84 16 19 C -0.10 -1.52 9.32 -39.58 -0.37 -1.88 16 20 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 22 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 23 C -0.11 -1.67 9.67 -39.59 -0.38 -2.05 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.40 6.59 8.61 -34.47 -0.30 6.29 16 32 H 0.29 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.12 1.72 7.55 -52.49 -0.40 1.32 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -34.95 327.86 -9.42 -44.37 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.21 Total: 8.32 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: -2.28 Total: -37.70 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.71 Total: -46.09 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -2.02 Total: -60.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 71.20 SS G_CDS: -0.54 Total: 70.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.95 -9.42 -44.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.950 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds