Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 C 1.52996 * 109.47122 * 175.31786 * 3 2 1 5 5 H 1.08993 * 109.47150 * 54.67514 * 4 3 2 6 6 N 1.46501 * 109.47177 * 294.67800 * 4 3 2 7 7 S 1.65604 * 120.00062 * 144.21501 * 6 4 3 8 8 O 1.42104 * 106.40003 * 177.66848 * 7 6 4 9 9 O 1.42097 * 106.40200 * 310.58835 * 7 6 4 10 10 C 1.76195 * 107.21700 * 64.12792 * 7 6 4 11 11 H 1.08004 * 120.00604 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00009 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00006 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00103 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47500 * 59.99768 * 14 12 10 16 16 H 1.48503 * 109.47001 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46730 * 299.99548 * 14 12 10 18 18 C 1.50698 * 109.47267 * 174.67660 * 4 3 2 19 19 C 1.38242 * 119.99673 * 79.72595 * 18 4 3 20 20 C 1.38234 * 119.99696 * 179.79534 * 19 18 4 21 21 C 1.38240 * 119.99999 * 0.43264 * 20 19 18 22 22 C 1.38231 * 119.99815 * 359.82094 * 21 20 19 23 23 C 1.38227 * 120.00191 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47335 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47685 * 299.99723 * 1 2 3 27 27 H 1.08999 * 109.47913 * 239.99529 * 2 1 3 28 28 H 1.09003 * 109.47335 * 119.99719 * 2 1 3 29 29 H 1.08998 * 109.47036 * 55.31754 * 3 2 1 30 30 H 1.08991 * 109.46876 * 295.31768 * 3 2 1 31 31 H 0.97001 * 120.00085 * 323.94001 * 6 4 3 32 32 H 0.96992 * 119.99856 * 179.97438 * 13 12 10 33 33 H 1.07997 * 120.00164 * 0.02562 * 19 18 4 34 34 H 1.07999 * 120.00087 * 180.27682 * 20 19 18 35 35 H 1.08001 * 119.99517 * 179.83230 * 21 20 19 36 36 H 1.08003 * 119.99955 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.99944 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5654 1.4442 0.1177 5 1 3.9915 0.8278 -0.6737 6 7 3.9551 0.9024 1.4219 7 16 5.3224 -0.0217 1.5596 8 8 5.4526 -0.3428 2.9377 9 8 5.2471 -1.0048 0.5363 10 6 6.6924 1.0108 1.1577 11 1 6.5292 2.0437 0.8874 12 6 7.9728 0.5003 1.1882 13 7 8.1716 -0.7573 1.5179 14 14 9.4253 1.5952 0.7628 15 1 9.4737 2.7418 1.7052 16 1 10.6830 0.8130 0.8706 17 1 9.2739 2.1012 -0.6251 18 6 4.0779 2.8552 -0.0135 19 6 4.0226 3.7140 1.0684 20 6 4.4966 5.0071 0.9493 21 6 5.0176 5.4441 -0.2542 22 6 5.0680 4.5870 -1.3375 23 6 4.5980 3.2927 -1.2172 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6097 1.9800 0.8451 30 1 1.7467 1.9315 -0.9289 31 1 3.4144 1.0882 2.2055 32 1 9.0723 -1.1165 1.5390 33 1 3.6126 3.3736 2.0078 34 1 4.4576 5.6767 1.7958 35 1 5.3855 6.4553 -0.3480 36 1 5.4747 4.9285 -2.2779 37 1 4.6370 2.6231 -2.0637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -111.728937 kcal Electronic energy + Delta-G solvation = -20890.151062 eV Core-core repulsion = 17756.840037 eV Total energy + Delta-G solvation = -3133.311025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37879 -37.69523 -37.26120 -36.12053 -35.16317 -34.19745 -31.87616 -31.48172 -28.79444 -28.19353 -24.89230 -23.39883 -22.16466 -21.58447 -20.99114 -19.37268 -18.25133 -17.87750 -17.02473 -16.80343 -16.20593 -15.86278 -15.70211 -15.56026 -15.27011 -14.53162 -14.29690 -14.12545 -13.98292 -13.62496 -13.46868 -13.12901 -13.01452 -12.77702 -12.54158 -12.48484 -12.36017 -12.34596 -12.17837 -11.95552 -11.79949 -11.73030 -11.46504 -11.23039 -10.97182 -10.24513 -9.68942 -9.49087 -8.73634 -7.43170 0.34855 0.58853 0.62903 1.31452 1.33135 1.45823 2.20230 2.59890 2.89654 3.11746 3.64529 3.81684 4.00928 4.09917 4.20242 4.27682 4.31318 4.40231 4.48102 4.53443 4.69825 4.76277 4.79278 4.83533 4.97143 5.09166 5.10526 5.21453 5.27573 5.30392 5.32152 5.43398 5.53218 5.67783 5.71555 5.86773 5.97075 6.23716 6.41520 6.82425 8.22814 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.008867 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.029926 B = 3157.056327 C = 4684.525118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.104 4.104 4 C 0.192 3.808 5 H 0.078 0.922 6 N -1.109 6.109 7 S 2.720 3.280 8 O -1.048 7.048 9 O -1.042 7.042 10 C -1.026 5.026 11 H 0.117 0.883 12 C 0.075 3.925 13 N -0.896 5.896 14 Si 0.979 3.021 15 H -0.254 1.254 16 H -0.264 1.264 17 H -0.250 1.250 18 C -0.104 4.104 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.297 0.703 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 12.176 -5.314 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.143 4.143 4 C 0.084 3.916 5 H 0.096 0.904 6 N -0.867 5.867 7 S 2.821 3.179 8 O -1.038 7.038 9 O -1.032 7.032 10 C -1.160 5.160 11 H 0.135 0.865 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.798 3.202 15 H -0.177 1.177 16 H -0.188 1.188 17 H -0.174 1.174 18 C -0.105 4.105 19 C -0.133 4.133 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.249 0.751 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.182 11.012 -5.181 15.868 hybrid contribution 1.013 0.472 0.213 1.138 sum -9.169 11.484 -4.969 15.512 Atomic orbital electron populations 1.21722 0.93836 1.01991 1.02560 1.21594 0.97261 0.96633 1.01691 1.21814 0.90926 0.97410 1.04110 1.19734 0.97222 0.90333 0.84288 0.90426 1.55409 1.43994 1.71566 1.15705 0.99853 0.73060 0.73421 0.71549 1.93307 1.87359 1.85249 1.37914 1.93304 1.87737 1.61184 1.60938 1.30827 1.09856 1.13230 1.62103 0.86471 1.25885 1.03096 0.96080 0.88715 1.69987 1.26646 1.15420 1.40758 0.85311 0.75682 0.78702 0.80484 1.17743 1.18796 1.17380 1.20377 0.99646 0.95781 0.94743 1.21110 1.00014 0.93875 0.98317 1.21422 0.98846 0.95959 0.98589 1.21450 0.99559 1.00711 0.92994 1.21385 0.99655 0.93491 1.00009 1.21250 0.98828 0.97031 0.97472 0.91555 0.92673 0.91996 0.92692 0.93484 0.89863 0.89019 0.75113 0.89269 0.85735 0.84274 0.83852 0.84109 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.13 -3.55 5.88 30.59 0.18 -3.37 16 3 C -0.10 -2.60 4.79 30.60 0.15 -2.45 16 4 C 0.19 6.41 2.49 44.24 0.11 6.52 16 5 H 0.08 2.93 7.39 -2.39 -0.02 2.91 16 6 N -1.11 -43.13 4.17 -172.53 -0.72 -43.85 16 7 S 2.72 146.94 4.99 -56.49 -0.28 146.66 16 8 O -1.05 -63.44 18.02 -128.00 -2.31 -65.75 16 9 O -1.04 -62.37 17.39 -128.00 -2.23 -64.59 16 10 C -1.03 -56.86 9.70 67.73 0.66 -56.20 16 11 H 0.12 6.00 7.08 -2.91 -0.02 5.98 16 12 C 0.07 4.22 5.46 84.65 0.46 4.68 16 13 N -0.90 -54.26 13.19 21.45 0.28 -53.98 16 14 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 15 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 18 C -0.10 -3.28 4.23 -19.87 -0.08 -3.36 16 19 C -0.11 -3.38 9.32 22.27 0.21 -3.17 16 20 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 21 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 22 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 23 C -0.13 -3.78 9.67 22.27 0.22 -3.56 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.43 7.64 -2.39 -0.02 1.41 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.41 13.72 8.61 -96.74 -0.83 12.89 16 32 H 0.30 16.25 8.31 -92.71 -0.77 15.48 16 33 H 0.12 3.40 7.55 -2.91 -0.02 3.38 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.13 3.48 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -76.56 327.86 0.28 -76.27 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.23 Total: 33.05 kcal Atomic # 6 Polarization: -75.39 SS G_CDS: 3.28 Total: -72.11 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -0.44 Total: -97.83 kcal Atomic # 8 Polarization: -125.81 SS G_CDS: -4.53 Total: -130.34 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 146.94 SS G_CDS: -0.28 Total: 146.66 kcal Total: -76.56 0.28 -76.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.455 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds