Wall clock time and date at job start Tue Mar 31 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38233 * 120.00080 * 2 1 4 4 C 1.38232 * 120.00379 * 180.24806 * 3 2 1 5 5 C 1.38234 * 119.99745 * 359.76392 * 4 3 2 6 6 C 1.38235 * 119.99955 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00179 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00078 * 359.95568 * 6 5 4 9 9 S 1.76199 * 120.00262 * 180.02562 * 8 6 5 10 10 O 1.42100 * 106.40372 * 153.05162 * 9 8 6 11 11 O 1.42105 * 106.40172 * 20.13270 * 9 8 6 12 12 N 1.65590 * 107.21956 * 266.59364 * 9 8 6 13 13 C 1.46502 * 120.00223 * 64.99865 * 12 9 8 14 14 H 1.08998 * 109.47208 * 335.00061 * 13 12 9 15 15 C 1.53002 * 109.47468 * 94.99864 * 13 12 9 16 16 C 1.50705 * 109.47327 * 214.99960 * 13 12 9 17 17 H 1.07995 * 119.99858 * 354.42057 * 16 13 12 18 18 C 1.37877 * 119.99935 * 174.41344 * 16 13 12 19 19 N 1.31516 * 119.99757 * 159.69983 * 18 16 13 20 20 Si 1.86794 * 120.00110 * 339.98103 * 18 16 13 21 21 H 1.48505 * 109.47045 * 269.71804 * 20 18 16 22 22 H 1.48494 * 109.47411 * 29.71949 * 20 18 16 23 23 H 1.48505 * 109.47314 * 149.72224 * 20 18 16 24 24 H 1.09000 * 109.47591 * 260.99368 * 1 2 3 25 25 H 1.08994 * 109.47331 * 20.99776 * 1 2 3 26 26 H 1.09004 * 109.46771 * 140.99772 * 1 2 3 27 27 H 1.08007 * 120.00041 * 0.03214 * 3 2 1 28 28 H 1.08001 * 120.00646 * 179.78627 * 4 3 2 29 29 H 1.08000 * 120.00458 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47426 * 237.60507 * 7 6 5 31 31 H 1.09005 * 109.47174 * 357.60401 * 7 6 5 32 32 H 1.08997 * 109.47484 * 117.60068 * 7 6 5 33 33 H 0.96999 * 120.00255 * 244.99860 * 12 9 8 34 34 H 1.08992 * 109.47021 * 173.99088 * 15 13 12 35 35 H 1.08999 * 109.47120 * 293.99857 * 15 13 12 36 36 H 1.09004 * 109.46845 * 53.99468 * 15 13 12 37 37 H 0.97005 * 119.99619 * 355.21443 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0001 -0.0054 6 6 3.5805 -1.1971 -0.0010 7 6 4.3340 -2.5022 -0.0019 8 6 2.1982 -1.1971 0.0045 9 16 1.3172 -2.7230 0.0108 10 8 0.0667 -2.4618 0.6332 11 8 2.2269 -3.7097 0.4781 12 7 0.9843 -3.1034 -1.5661 13 6 2.0781 -3.3977 -2.4952 14 1 2.9899 -2.9113 -2.1488 15 6 2.2998 -4.9102 -2.5593 16 6 1.7242 -2.8833 -3.8668 17 1 0.7445 -2.4682 -4.0517 18 6 2.6513 -2.9426 -4.8857 19 7 2.2562 -2.8817 -6.1386 20 14 4.4678 -3.1171 -4.4866 21 1 5.0771 -1.7694 -4.3535 22 1 4.6251 -3.8597 -3.2103 23 1 5.1453 -3.8610 -5.5788 24 1 -0.3634 -0.1609 1.0150 25 1 -0.3634 0.9594 -0.3682 26 1 -0.3633 -0.7987 -0.6468 27 1 1.6581 2.1325 0.0005 28 1 4.1205 2.1325 -0.0087 29 1 5.3517 0.0000 -0.0099 30 1 4.0356 -3.0934 -0.8676 31 1 5.4047 -2.3036 -0.0492 32 1 4.1067 -3.0536 0.9105 33 1 0.0651 -3.1313 -1.8746 34 1 3.0388 -5.1368 -3.3278 35 1 2.6589 -5.2661 -1.5936 36 1 1.3596 -5.4053 -2.8022 37 1 1.3092 -2.8652 -6.3482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194660445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:50 Heat of formation + Delta-G solvation = -54.082334 kcal Electronic energy + Delta-G solvation = -21541.966009 eV Core-core repulsion = 18411.154728 eV Total energy + Delta-G solvation = -3130.811281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38210 -37.10489 -35.67737 -35.41376 -33.29563 -32.33386 -32.06121 -29.00682 -27.32291 -26.49234 -24.78721 -22.70871 -20.76895 -20.71011 -19.13241 -18.07394 -17.10698 -16.62271 -15.97664 -15.37598 -15.18387 -14.27687 -13.99780 -13.87673 -13.45469 -13.25971 -12.96837 -12.82266 -12.54067 -12.44819 -12.27718 -12.08797 -12.01794 -11.58543 -11.57966 -11.43517 -11.11542 -11.07593 -10.82624 -10.53915 -10.22941 -10.09309 -9.79343 -9.29602 -9.09850 -8.59598 -8.46211 -8.35682 -6.59233 -4.21694 0.85392 1.10882 1.44673 3.31668 3.34637 3.45425 3.49558 3.73436 4.24047 4.38306 4.67293 4.84819 4.91839 4.98056 5.09986 5.31089 5.49739 5.54668 5.60718 5.81696 5.87752 5.92302 5.94813 6.10738 6.27434 6.30929 6.36829 6.49036 6.49651 6.58964 6.61057 6.67094 7.02474 7.10345 7.28061 7.63925 7.98361 8.25496 8.76908 9.45019 10.78391 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.008473 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.558356 B = 3303.881586 C = 3724.065947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.027 3.973 3 C -0.157 4.157 4 C -0.060 4.060 5 C -0.155 4.155 6 C 0.028 3.972 7 C -0.154 4.154 8 C -0.677 4.677 9 S 2.686 3.314 10 O -0.978 6.978 11 O -0.964 6.964 12 N -1.094 6.094 13 C 0.250 3.750 14 H 0.036 0.964 15 C -0.163 4.163 16 C -0.612 4.612 17 H 0.065 0.935 18 C 0.041 3.959 19 N -0.895 5.895 20 Si 1.025 2.975 21 H -0.282 1.282 22 H -0.268 1.268 23 H -0.281 1.281 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.411 0.589 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 5.396 12.033 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.026 3.974 3 C -0.176 4.176 4 C -0.078 4.078 5 C -0.174 4.174 6 C 0.027 3.973 7 C -0.210 4.210 8 C -0.763 4.763 9 S 2.776 3.224 10 O -0.968 6.968 11 O -0.954 6.954 12 N -0.855 5.855 13 C 0.144 3.856 14 H 0.054 0.946 15 C -0.223 4.223 16 C -0.651 4.651 17 H 0.083 0.917 18 C -0.166 4.166 19 N -0.527 5.527 20 Si 0.852 3.148 21 H -0.208 1.208 22 H -0.193 1.193 23 H -0.206 1.206 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.245 0.755 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.318 4.853 12.127 13.477 hybrid contribution -1.509 0.937 -0.014 1.776 sum 1.809 5.790 12.114 13.548 Atomic orbital electron populations 1.21212 0.90000 1.03274 1.04508 1.19572 0.95995 0.91784 0.90083 1.21077 0.94420 0.97468 1.04591 1.21345 0.94406 0.98032 0.94029 1.21142 1.00009 0.91993 1.04256 1.19672 0.91543 0.96503 0.89574 1.21626 0.99550 0.93643 1.06217 1.30665 1.05586 1.20124 1.19962 1.01930 0.73194 0.73964 0.73272 1.93543 1.42083 1.86065 1.75123 1.93556 1.65160 1.56984 1.79663 1.55395 1.16444 1.85008 1.28618 1.18963 0.84369 0.92305 0.89938 0.94615 1.22548 1.01116 0.98777 0.99827 1.22083 1.02917 1.46475 0.93643 0.91670 1.25624 1.05267 0.93060 0.92670 1.70805 1.18961 1.44293 1.18671 0.84337 0.76164 0.77720 0.76608 1.20827 1.19317 1.20641 0.88901 0.91149 0.90305 0.85519 0.85606 0.85387 0.89071 0.91380 0.87507 0.75464 0.92571 0.94092 0.93120 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.31 36.00 0.30 -1.65 16 2 C 0.03 0.44 5.88 -104.63 -0.61 -0.18 16 3 C -0.16 -2.20 9.67 -39.59 -0.38 -2.58 16 4 C -0.06 -0.79 10.05 -39.58 -0.40 -1.19 16 5 C -0.16 -2.26 9.67 -39.58 -0.38 -2.64 16 6 C 0.03 0.48 5.65 -104.63 -0.59 -0.11 16 7 C -0.15 -2.51 8.18 36.00 0.29 -2.22 16 8 C -0.68 -12.03 5.80 -39.59 -0.23 -12.26 16 9 S 2.69 49.84 4.92 -107.50 -0.53 49.31 16 10 O -0.98 -18.49 14.52 -57.17 -0.83 -19.32 16 11 O -0.96 -18.89 13.29 -57.17 -0.76 -19.65 16 12 N -1.09 -21.61 5.46 -5.88 -0.03 -21.64 16 13 C 0.25 5.63 2.20 -69.08 -0.15 5.48 16 14 H 0.04 0.81 3.34 -51.93 -0.17 0.63 16 15 C -0.16 -3.51 8.92 37.16 0.33 -3.18 16 16 C -0.61 -16.05 9.00 -34.44 -0.31 -16.36 16 17 H 0.07 1.82 8.05 -52.49 -0.42 1.39 16 18 C 0.04 1.12 5.26 -17.82 -0.09 1.03 16 19 N -0.89 -26.13 13.70 55.43 0.76 -25.37 16 20 Si 1.02 23.74 26.30 -169.99 -4.47 19.27 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -5.60 5.84 56.52 0.33 -5.27 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.09 1.30 7.67 -51.93 -0.40 0.91 16 25 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 26 H 0.08 1.23 6.46 -51.93 -0.34 0.90 16 27 H 0.13 1.40 8.04 -52.48 -0.42 0.97 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.50 7.95 -52.49 -0.42 1.09 16 30 H 0.09 1.66 4.84 -51.93 -0.25 1.41 16 31 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 32 H 0.11 1.71 6.51 -51.93 -0.34 1.37 16 33 H 0.41 7.53 8.82 -34.46 -0.30 7.22 16 34 H 0.06 1.21 5.56 -51.93 -0.29 0.93 16 35 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -30.73 302.63 -8.18 -38.91 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.65 Total: 9.79 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -2.23 Total: -35.85 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.73 Total: -47.01 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.59 Total: -38.97 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.47 Total: 19.27 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -0.53 Total: 49.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.73 -8.18 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194660445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.175 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds