Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38875 * 119.24543 * 2 1 4 4 C 1.36874 * 119.81951 * 179.97438 * 3 2 1 5 5 C 1.41124 * 118.40154 * 359.74617 * 4 3 2 6 6 C 1.40842 * 120.72809 * 180.24462 * 5 4 3 7 7 H 1.07993 * 120.00399 * 149.18720 * 6 5 4 8 8 C 1.40055 * 119.99720 * 329.20032 * 6 5 4 9 9 N 1.30791 * 120.00127 * 348.60459 * 8 6 5 10 10 Si 1.86800 * 119.99969 * 168.61329 * 8 6 5 11 11 H 1.48499 * 109.47360 * 59.99421 * 10 8 6 12 12 H 1.48498 * 109.46933 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46824 * 299.99455 * 10 8 6 14 14 C 1.41939 * 118.54952 * 0.49516 * 5 4 3 15 15 C 1.47656 * 119.99628 * 179.77999 * 14 5 4 16 16 C 1.39815 * 120.15026 * 310.46038 * 15 14 5 17 17 C 1.37793 * 119.96983 * 179.97438 * 16 15 14 18 18 C 1.38519 * 120.34731 * 359.77301 * 17 16 15 19 19 C 1.38567 * 120.37093 * 0.45488 * 18 17 16 20 20 C 1.39145 * 119.91815 * 359.54572 * 19 18 17 21 21 O 1.36312 * 108.73105 * 180.25057 * 20 19 18 22 22 C 1.43989 * 105.49065 * 342.73331 * 21 20 19 23 23 O 1.36539 * 131.47288 * 179.85639 * 19 18 17 24 24 N 1.31736 * 119.24154 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46944 * 270.02427 * 1 2 3 26 26 H 1.09000 * 109.46968 * 30.02529 * 1 2 3 27 27 H 1.09001 * 109.46943 * 150.02457 * 1 2 3 28 28 H 1.08005 * 120.09085 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.80105 * 180.02562 * 4 3 2 30 30 H 0.96997 * 120.00015 * 180.02562 * 9 8 6 31 31 H 1.07993 * 120.01592 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.82446 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.81454 * 180.33214 * 18 17 16 34 34 H 1.09009 * 110.57033 * 268.52737 * 22 21 20 35 35 H 1.09001 * 110.57521 * 145.64591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2254 0.0005 5 6 4.2378 -0.0091 0.0066 6 6 5.6456 -0.0522 0.0125 7 1 6.1588 -0.8703 0.4959 8 6 6.3799 0.9662 -0.6081 9 7 5.7747 1.8320 -1.3793 10 14 8.2238 1.0878 -0.3346 11 1 8.8770 -0.1613 -0.8016 12 1 8.7622 2.2426 -1.0974 13 1 8.4979 1.2786 1.1124 14 6 3.4757 -1.2066 0.0010 15 6 4.1582 -2.5159 0.0022 16 6 5.1829 -2.7746 -0.9132 17 6 5.8176 -3.9976 -0.9085 18 6 5.4495 -4.9737 0.0028 19 6 4.4327 -4.7343 0.9132 20 6 3.7828 -3.5040 0.9202 21 8 2.8362 -3.5145 1.9010 22 6 2.6339 -4.9028 2.2254 23 8 3.8922 -5.5181 1.8919 24 7 2.1505 -1.1495 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6347 2.1408 -0.0004 29 1 4.0978 2.1585 0.0010 30 1 6.2833 2.5370 -1.8095 31 1 5.4773 -2.0159 -1.6231 32 1 6.6085 -4.1950 -1.6170 33 1 5.9564 -5.9273 0.0024 34 1 1.8297 -5.3238 1.6219 35 1 2.4193 -5.0207 3.2875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242586031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -15.596901 kcal Electronic energy + Delta-G solvation = -21782.101487 eV Core-core repulsion = 18517.515108 eV Total energy + Delta-G solvation = -3264.586379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57545 -38.70584 -36.98299 -35.71624 -34.32065 -32.10433 -30.88005 -29.42957 -29.11152 -27.70814 -25.37527 -24.52107 -22.80702 -22.25871 -20.80065 -20.33148 -17.46498 -17.40297 -17.11902 -16.69802 -15.80646 -15.57112 -14.66839 -14.36868 -13.96730 -13.87757 -13.59959 -13.37989 -12.91918 -12.62003 -12.40927 -12.38971 -11.98893 -11.79618 -11.71184 -11.49530 -11.31354 -11.15094 -10.99069 -10.74701 -10.57037 -10.38141 -9.85799 -9.42876 -8.57293 -8.09580 -8.00945 -7.56392 -7.29712 -6.90316 -4.55149 1.66137 1.79629 2.57796 2.90584 2.97763 3.01214 3.12603 3.30790 3.79751 3.95462 4.23776 4.50480 5.01509 5.04089 5.20108 5.35427 5.51166 5.63461 5.72316 5.86402 6.00707 6.05549 6.09207 6.30649 6.39302 6.50091 6.57537 6.64131 6.73262 6.88345 6.93259 6.99886 7.06501 7.17228 7.23435 7.62027 7.68769 7.81880 7.87741 8.33319 8.56524 8.62960 9.55417 9.98757 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.008014 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.151160 B = 3493.231642 C = 5187.474115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.004 4.004 3 C -0.143 4.143 4 C -0.122 4.122 5 C 0.089 3.911 6 C -0.443 4.443 7 H 0.086 0.914 8 C 0.075 3.925 9 N -0.791 5.791 10 Si 0.911 3.089 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.016 3.984 15 C 0.044 3.956 16 C -0.079 4.079 17 C -0.122 4.122 18 C -0.119 4.119 19 C 0.014 3.986 20 C 0.042 3.958 21 O -0.293 6.293 22 C 0.211 3.789 23 O -0.319 6.319 24 N -0.441 5.441 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.285 0.715 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -6.349 1.347 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C -0.163 4.163 4 C -0.148 4.148 5 C 0.084 3.916 6 C -0.472 4.472 7 H 0.104 0.896 8 C -0.144 4.144 9 N -0.416 5.416 10 Si 0.735 3.265 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.187 1.187 14 C -0.122 4.122 15 C 0.043 3.957 16 C -0.098 4.098 17 C -0.141 4.141 18 C -0.138 4.138 19 C -0.030 4.030 20 C -0.003 4.003 21 O -0.209 6.209 22 C 0.099 3.901 23 O -0.236 6.236 24 N -0.149 5.149 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.253 -6.916 1.413 7.169 hybrid contribution 1.117 0.947 0.247 1.485 sum -0.136 -5.969 1.659 6.197 Atomic orbital electron populations 1.20283 0.91507 1.00879 1.00450 1.20278 0.94896 0.88490 1.10948 1.21269 0.95460 0.97160 1.02446 1.21360 0.92563 0.98708 1.02171 1.18303 0.94096 0.90593 0.88602 1.19495 0.90894 1.06776 1.30032 0.89575 1.25970 1.01572 0.93944 0.92911 1.69739 1.38892 1.12425 1.20513 0.86296 0.81385 0.79011 0.79857 1.18473 1.20182 1.18670 1.19300 0.88464 0.90784 1.13603 1.17531 0.95548 0.91052 0.91591 1.21212 0.94107 0.96561 0.97960 1.20734 1.00920 0.93021 0.99392 1.19895 0.98036 1.00664 0.95157 1.19686 1.00043 0.90093 0.93135 1.19898 0.93133 0.95143 0.92148 1.87406 1.56984 1.25248 1.51220 1.25490 0.86164 0.76618 1.01871 1.87270 1.34311 1.49901 1.52121 1.66882 1.09472 1.29209 1.09363 0.93147 0.92881 0.92618 0.88255 0.85673 0.90377 0.83802 0.85141 0.85849 0.90714 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.01 0.37 -0.98 16 2 C 0.00 -0.09 6.79 -82.40 -0.56 -0.65 16 3 C -0.14 -3.29 9.64 -39.84 -0.38 -3.67 16 4 C -0.12 -3.06 8.70 -38.98 -0.34 -3.40 16 5 C 0.09 2.28 5.52 -106.40 -0.59 1.69 16 6 C -0.44 -10.91 6.94 -37.92 -0.26 -11.18 16 7 H 0.09 2.09 6.86 -52.49 -0.36 1.73 16 8 C 0.07 1.74 5.25 -17.31 -0.09 1.65 16 9 N -0.79 -18.95 11.06 55.55 0.61 -18.34 16 10 Si 0.91 17.56 29.58 -169.99 -5.03 12.53 16 11 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 12 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 14 C 0.02 0.41 6.36 -82.26 -0.52 -0.11 16 15 C 0.04 1.01 5.09 -104.80 -0.53 0.48 16 16 C -0.08 -1.59 8.07 -39.15 -0.32 -1.91 16 17 C -0.12 -2.03 10.02 -39.64 -0.40 -2.43 16 18 C -0.12 -1.97 10.05 -39.36 -0.40 -2.36 16 19 C 0.01 0.27 7.15 -39.12 -0.28 -0.01 16 20 C 0.04 0.90 6.83 -38.58 -0.26 0.64 16 21 O -0.29 -6.11 11.39 -45.08 -0.51 -6.62 16 22 C 0.21 3.25 8.89 101.05 0.90 4.15 16 23 O -0.32 -5.56 11.41 -45.82 -0.52 -6.08 16 24 N -0.44 -11.06 10.12 -5.46 -0.06 -11.12 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 29 H 0.13 3.14 6.51 -52.49 -0.34 2.80 16 30 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 31 H 0.14 2.95 7.26 -52.49 -0.38 2.57 16 32 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 35 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -28.85 304.06 -8.19 -37.04 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.60 Total: 6.09 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.67 Total: -18.09 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.56 Total: -29.45 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.04 Total: -12.70 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.85 -8.19 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242586031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds