Wall clock time and date at job start Tue Mar 31 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31254 * 119.80085 * 2 1 4 4 C 1.33066 * 121.72062 * 180.02562 * 3 2 1 5 5 C 1.47811 * 119.45688 * 180.02562 * 4 3 2 6 6 C 1.39744 * 120.14490 * 179.72889 * 5 4 3 7 7 C 1.37813 * 119.98091 * 179.71426 * 6 5 4 8 8 C 1.38506 * 120.33507 * 0.55640 * 7 6 5 9 9 C 1.38562 * 120.35264 * 359.71815 * 8 7 6 10 10 C 1.39150 * 119.91770 * 0.02562 * 9 8 7 11 11 O 1.36330 * 108.71937 * 179.97438 * 10 9 8 12 12 C 1.43987 * 105.49645 * 342.73285 * 11 10 9 13 13 O 1.36545 * 131.47005 * 180.02562 * 9 8 7 14 14 C 1.39976 * 121.08605 * 0.02562 * 4 3 2 15 15 C 1.36557 * 119.46045 * 0.02562 * 14 4 3 16 16 C 1.40954 * 119.79361 * 180.02562 * 2 1 3 17 17 C 1.41029 * 120.54896 * 359.97075 * 16 2 1 18 18 H 1.07995 * 120.00002 * 334.76848 * 17 16 2 19 19 C 1.39994 * 119.99692 * 154.76435 * 17 16 2 20 20 N 1.30812 * 120.00545 * 343.74307 * 19 17 16 21 21 Si 1.86801 * 119.99785 * 163.74321 * 19 17 16 22 22 H 1.48497 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47111 * 119.99951 * 21 19 17 24 24 H 1.48495 * 109.47431 * 240.00128 * 21 19 17 25 25 H 1.09002 * 109.46352 * 269.97622 * 1 2 3 26 26 H 1.08996 * 109.46817 * 29.97301 * 1 2 3 27 27 H 1.08998 * 109.47055 * 149.97609 * 1 2 3 28 28 H 1.08007 * 120.01003 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.83328 * 180.27032 * 7 6 5 30 30 H 1.07998 * 119.82310 * 179.69564 * 8 7 6 31 31 H 1.09004 * 110.57317 * 268.53991 * 12 11 10 32 32 H 1.08996 * 110.58119 * 145.65188 * 12 11 10 33 33 H 1.07998 * 120.27030 * 179.97438 * 14 4 3 34 34 H 1.08005 * 120.78822 * 180.25236 * 15 14 4 35 35 H 0.96994 * 120.00006 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1594 1.1390 0.0000 4 6 3.4893 1.1835 -0.0005 5 6 4.1727 2.4942 0.0001 6 6 5.5687 2.5578 0.0053 7 6 6.2023 3.7816 -0.0001 8 6 5.4624 4.9524 0.0009 9 6 4.0776 4.9056 0.0015 10 6 3.4247 3.6768 0.0016 11 8 2.0792 3.8962 0.0028 12 6 1.9131 5.2656 0.4153 13 8 3.1393 5.8976 0.0020 14 6 4.2518 0.0097 -0.0016 15 6 3.6205 -1.2012 -0.0027 16 6 2.2074 -1.2232 -0.0005 17 6 1.5096 -2.4488 -0.0005 18 1 0.5074 -2.4995 0.3986 19 6 2.1161 -3.5996 -0.5179 20 7 3.1752 -3.4952 -1.2785 21 14 1.4129 -5.2843 -0.1220 22 1 0.2216 -5.1307 0.7511 23 1 1.0183 -5.9644 -1.3818 24 1 2.4393 -6.0970 0.5787 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 6.1508 1.6481 0.0093 29 1 7.2813 3.8279 -0.0005 30 1 5.9675 5.9070 0.0016 31 1 1.7952 5.3282 1.4971 32 1 1.0600 5.7175 -0.0909 33 1 5.3305 0.0612 -0.0024 34 1 4.1877 -2.1204 0.0005 35 1 3.5956 -4.2926 -1.6367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242586475.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:58 Heat of formation + Delta-G solvation = -30.798794 kcal Electronic energy + Delta-G solvation = -21313.802186 eV Core-core repulsion = 18048.556603 eV Total energy + Delta-G solvation = -3265.245582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.94881 -40.45677 -38.53524 -37.11038 -36.02512 -33.92186 -32.70290 -31.06697 -30.77456 -28.74483 -26.87032 -26.61512 -24.30473 -23.87824 -22.42971 -21.78696 -19.34524 -18.76127 -18.59686 -18.19182 -17.24848 -17.16758 -16.39925 -16.01222 -15.58667 -15.30198 -15.05138 -14.90070 -14.42564 -14.23512 -13.82921 -13.73838 -13.66066 -13.47465 -13.38257 -12.93171 -12.91931 -12.79337 -12.65920 -12.24176 -12.00177 -11.74952 -11.56974 -11.25844 -10.27510 -10.03432 -9.87084 -9.05520 -8.89995 -8.69551 -6.40428 -0.05585 0.31122 0.94015 1.14343 1.39565 1.53774 1.55996 1.97197 2.15888 2.56184 2.70936 2.91683 3.53416 3.71228 3.78582 3.89279 4.05376 4.24064 4.31523 4.38749 4.42812 4.56011 4.61426 4.70037 4.88483 4.95378 5.00286 5.06945 5.16548 5.24241 5.26688 5.45202 5.48064 5.53509 5.66854 5.81782 5.95166 6.02478 6.31973 6.46155 6.68435 6.76959 7.76439 8.16599 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.004495 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.018312 B = 6228.063820 C = 7080.244238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.020 4.020 3 N -0.450 5.450 4 C -0.018 4.018 5 C -0.006 4.006 6 C -0.124 4.124 7 C -0.093 4.093 8 C -0.116 4.116 9 C 0.012 3.988 10 C 0.015 3.985 11 O -0.310 6.310 12 C 0.199 3.801 13 O -0.322 6.322 14 C -0.128 4.128 15 C -0.163 4.163 16 C 0.044 3.956 17 C -0.455 4.455 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.808 5.808 21 Si 0.989 3.011 22 H -0.253 1.253 23 H -0.265 1.265 24 H -0.263 1.263 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 8.360 2.878 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.166 4.166 3 N -0.158 5.158 4 C -0.152 4.152 5 C -0.008 4.008 6 C -0.142 4.142 7 C -0.110 4.110 8 C -0.135 4.135 9 C -0.032 4.032 10 C -0.030 4.030 11 O -0.226 6.226 12 C 0.088 3.912 13 O -0.239 6.239 14 C -0.148 4.148 15 C -0.188 4.188 16 C 0.040 3.960 17 C -0.483 4.483 18 H 0.112 0.888 19 C -0.183 4.183 20 N -0.432 5.432 21 Si 0.809 3.191 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.187 1.187 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.197 0.803 30 H 0.179 0.821 31 H 0.110 0.890 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.145 9.103 2.621 9.981 hybrid contribution -0.147 -1.539 -0.005 1.546 sum 2.998 7.564 2.617 8.547 Atomic orbital electron populations 1.20204 0.89083 1.01421 1.01169 1.21581 0.96904 0.87936 1.10135 1.66973 1.09273 1.30260 1.09334 1.19231 0.89268 0.91952 1.14784 1.18097 0.92949 0.88326 1.01425 1.21282 0.90631 1.00274 1.02060 1.21187 1.01619 0.89430 0.98781 1.20449 0.87498 1.01299 1.04207 1.20115 0.92758 0.84845 1.05475 1.20000 0.82900 0.94562 1.05530 1.87505 1.20466 1.30132 1.84475 1.26010 0.88296 0.75794 1.01091 1.87259 1.18806 1.32416 1.85399 1.21553 1.00096 0.92602 1.00519 1.21349 0.94834 0.97031 1.05613 1.18814 0.93268 0.94134 0.89833 1.19969 1.02219 0.92539 1.33610 0.88791 1.26959 0.94304 1.05479 0.91600 1.69835 1.18072 1.33957 1.21338 0.85037 0.79551 0.75154 0.79372 1.17615 1.18950 1.18727 0.92124 0.92743 0.91257 0.83373 0.80335 0.82101 0.89036 0.82837 0.84987 0.86274 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.68 9.58 71.24 0.68 -1.99 16 2 C -0.02 -1.06 6.86 43.31 0.30 -0.76 16 3 N -0.45 -23.68 8.85 -171.02 -1.51 -25.19 16 4 C -0.02 -0.88 6.74 41.91 0.28 -0.60 16 5 C -0.01 -0.27 5.89 -19.97 -0.12 -0.39 16 6 C -0.12 -3.94 9.41 22.53 0.21 -3.73 16 7 C -0.09 -2.25 10.02 22.23 0.22 -2.03 16 8 C -0.12 -3.03 10.05 22.41 0.23 -2.81 16 9 C 0.01 0.41 7.15 22.57 0.16 0.57 16 10 C 0.02 0.63 6.77 22.90 0.16 0.78 16 11 O -0.31 -12.74 10.37 -74.06 -0.77 -13.50 16 12 C 0.20 5.74 8.89 113.37 1.01 6.75 16 13 O -0.32 -10.14 11.41 -76.58 -0.87 -11.02 16 14 C -0.13 -6.06 9.38 22.30 0.21 -5.85 16 15 C -0.16 -8.48 8.72 22.64 0.20 -8.28 16 16 C 0.04 2.37 5.58 -21.17 -0.12 2.25 16 17 C -0.46 -22.94 8.14 23.38 0.19 -22.75 16 18 H 0.09 4.46 6.86 -2.91 -0.02 4.44 16 19 C 0.03 1.60 5.19 85.27 0.44 2.05 16 20 N -0.81 -39.46 10.94 21.84 0.24 -39.22 16 21 Si 0.99 34.99 29.59 68.60 2.03 37.02 16 22 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 2.91 6.76 -2.39 -0.02 2.89 16 28 H 0.15 4.19 6.15 -2.91 -0.02 4.17 16 29 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.13 5.20 6.15 -2.91 -0.02 5.19 16 34 H 0.12 6.21 6.26 -2.91 -0.02 6.20 16 35 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 Total: -1.00 -66.80 299.99 4.30 -62.50 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.14 Total: 26.19 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.05 Total: -36.78 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -1.28 Total: -64.41 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.64 Total: -24.52 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -66.80 4.30 -62.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242586475.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.706 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds