Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38938 * 119.24472 * 2 1 4 4 C 1.36839 * 119.81672 * 179.97438 * 3 2 1 5 5 C 1.41183 * 118.38861 * 0.02562 * 4 3 2 6 6 C 1.40812 * 120.72151 * 180.02562 * 5 4 3 7 7 H 1.08008 * 119.99292 * 208.16326 * 6 5 4 8 8 C 1.40159 * 120.00359 * 28.15775 * 6 5 4 9 9 N 1.30713 * 119.99494 * 11.01176 * 8 6 5 10 10 Si 1.86797 * 119.99981 * 191.00780 * 8 6 5 11 11 H 1.48501 * 109.47162 * 60.00455 * 10 8 6 12 12 H 1.48502 * 109.46965 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47170 * 300.00416 * 10 8 6 14 14 C 1.41923 * 118.54916 * 0.02562 * 5 4 3 15 15 C 1.47636 * 119.99592 * 180.02562 * 14 5 4 16 16 C 1.39505 * 120.23412 * 83.70179 * 15 14 5 17 17 C 1.37979 * 119.99457 * 179.97438 * 16 15 14 18 18 C 1.38561 * 120.46553 * 0.03235 * 17 16 15 19 19 C 1.38028 * 120.46960 * 359.97438 * 18 17 16 20 20 C 1.39460 * 119.98649 * 359.70085 * 19 18 17 21 21 C 1.47517 * 120.22830 * 180.27619 * 20 19 18 22 22 O 1.21494 * 119.99965 * 185.66610 * 21 20 19 23 23 O 1.34757 * 119.99861 * 5.67142 * 21 20 19 24 24 N 1.31673 * 119.24016 * 179.73115 * 2 1 3 25 25 H 1.09005 * 109.47410 * 89.99775 * 1 2 3 26 26 H 1.08998 * 109.47531 * 209.99891 * 1 2 3 27 27 H 1.09004 * 109.46913 * 329.99908 * 1 2 3 28 28 H 1.08006 * 120.08812 * 359.95872 * 3 2 1 29 29 H 1.07999 * 120.80783 * 180.02562 * 4 3 2 30 30 H 0.97008 * 119.99518 * 179.97438 * 9 8 6 31 31 H 1.08005 * 120.00295 * 359.96459 * 16 15 14 32 32 H 1.08001 * 119.76795 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.76918 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.00773 * 179.97438 * 19 18 17 35 35 H 0.96699 * 116.99785 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2123 0.0000 4 6 3.5540 1.2260 0.0005 5 6 4.2377 -0.0093 0.0005 6 6 5.6451 -0.0526 0.0016 7 1 6.1598 -0.8933 -0.4399 8 6 6.3781 0.9952 0.5754 9 7 5.7695 1.9008 1.2952 10 14 8.2245 1.0974 0.3115 11 1 8.5113 1.2124 -1.1410 12 1 8.7603 2.2886 1.0182 13 1 8.8698 -0.1277 0.8480 14 6 3.4753 -1.2064 -0.0006 15 6 4.1573 -2.5158 -0.0001 16 6 4.5977 -3.0780 1.1983 17 6 5.2341 -4.3022 1.1931 18 6 5.4414 -4.9813 0.0032 19 6 5.0137 -4.4428 -1.1936 20 6 4.3623 -3.2097 -1.2099 21 6 3.8976 -2.6321 -2.4852 22 8 3.4238 -1.5136 -2.5087 23 8 3.9985 -3.3452 -3.6243 24 7 2.1501 -1.1489 0.0054 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6348 2.1413 -0.0007 29 1 4.0979 2.1590 0.0010 30 1 6.2769 2.6258 1.6927 31 1 4.4407 -2.5549 2.1301 32 1 5.5732 -4.7343 2.1231 33 1 5.9411 -5.9386 0.0121 34 1 5.1794 -4.9783 -2.1167 35 1 3.6803 -2.9248 -4.4349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242879225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = -43.652379 kcal Electronic energy + Delta-G solvation = -21938.497131 eV Core-core repulsion = 18672.694175 eV Total energy + Delta-G solvation = -3265.802956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92669 -38.51763 -37.67331 -35.47999 -34.21458 -32.21705 -30.90838 -30.73537 -29.36234 -27.69006 -24.75744 -23.82150 -22.57152 -21.20172 -20.63300 -19.88616 -17.54326 -17.30425 -16.82849 -15.67848 -15.55623 -14.99851 -14.59049 -14.43279 -14.14798 -13.89960 -13.48426 -13.02659 -12.72167 -12.49174 -12.24600 -11.90073 -11.67603 -11.52924 -11.43095 -11.16663 -11.15155 -10.98160 -10.89121 -10.68661 -10.54369 -9.90281 -9.75022 -9.36514 -8.57536 -8.44425 -8.08726 -7.89620 -7.32503 -6.80753 -4.45639 1.24123 1.83121 2.63216 2.97439 3.00658 3.04246 3.17082 3.22689 3.52485 3.85689 4.28940 4.59828 5.22053 5.27641 5.30643 5.52637 5.60329 5.87161 5.99755 6.01862 6.14073 6.27407 6.38913 6.48451 6.50662 6.57749 6.67900 6.82095 6.89149 6.95551 7.05677 7.08341 7.13998 7.26706 7.33758 7.77094 7.89166 8.00862 8.44815 8.49162 8.68975 8.76988 9.66602 10.08447 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.009160 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.716167 B = 3055.900382 C = 4285.937223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.002 4.002 3 C -0.145 4.145 4 C -0.123 4.123 5 C 0.097 3.903 6 C -0.445 4.445 7 H 0.077 0.923 8 C 0.076 3.924 9 N -0.794 5.794 10 Si 0.909 3.091 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.263 1.263 14 C 0.029 3.971 15 C 0.104 3.896 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.152 4.152 19 C -0.070 4.070 20 C -0.123 4.123 21 C 0.515 3.485 22 O -0.474 6.474 23 O -0.526 6.526 24 N -0.445 5.445 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.283 0.717 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -7.645 -2.481 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.143 4.143 3 C -0.165 4.165 4 C -0.148 4.148 5 C 0.093 3.907 6 C -0.475 4.475 7 H 0.095 0.905 8 C -0.142 4.142 9 N -0.420 5.420 10 Si 0.733 3.267 11 H -0.188 1.188 12 H -0.201 1.201 13 H -0.187 1.187 14 C -0.110 4.110 15 C 0.103 3.897 16 C -0.129 4.129 17 C -0.107 4.107 18 C -0.171 4.171 19 C -0.089 4.089 20 C -0.125 4.125 21 C 0.357 3.643 22 O -0.359 6.359 23 O -0.338 6.338 24 N -0.154 5.154 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.145 0.855 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.105 -8.034 -1.959 8.270 hybrid contribution 1.214 1.331 -0.652 1.916 sum 1.320 -6.702 -2.611 7.313 Atomic orbital electron populations 1.20269 0.91768 1.00682 1.00294 1.20135 0.94558 0.88527 1.11120 1.21202 0.95472 0.96948 1.02889 1.21365 0.92522 0.98724 1.02221 1.18112 0.93652 0.90396 0.88532 1.19382 0.91066 1.04582 1.32431 0.90475 1.25944 1.01356 0.94210 0.92740 1.69711 1.38584 1.10858 1.22808 0.86330 0.81733 0.78770 0.79824 1.18760 1.20148 1.18709 1.19141 0.88773 0.90439 1.12650 1.18459 0.90037 0.90708 0.90492 1.21272 0.98693 0.95152 0.97817 1.21245 0.96774 0.94641 0.98021 1.20993 1.03123 1.00599 0.92349 1.21249 0.95433 0.93679 0.98501 1.19175 1.06154 0.96898 0.90283 1.20879 0.76146 0.83469 0.83788 1.90993 1.39857 1.19016 1.86074 1.84552 1.79605 1.50857 1.18790 1.66767 1.09092 1.29365 1.10140 0.93324 0.92767 0.93011 0.88608 0.85511 0.90576 0.85295 0.85929 0.85995 0.85249 0.73787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.15 36.00 0.37 -1.03 16 2 C 0.00 -0.06 6.79 -82.40 -0.56 -0.62 16 3 C -0.14 -3.53 9.64 -39.83 -0.38 -3.92 16 4 C -0.12 -3.25 8.72 -38.97 -0.34 -3.59 16 5 C 0.10 2.62 5.40 -106.40 -0.58 2.04 16 6 C -0.44 -11.67 8.48 -37.89 -0.32 -11.99 16 7 H 0.08 2.00 7.33 -52.48 -0.38 1.62 16 8 C 0.08 1.87 5.27 -17.31 -0.09 1.77 16 9 N -0.79 -20.00 10.85 55.56 0.60 -19.39 16 10 Si 0.91 18.55 29.58 -169.99 -5.03 13.52 16 11 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 14 C 0.03 0.75 3.82 -82.27 -0.31 0.43 16 15 C 0.10 2.32 4.32 -104.56 -0.45 1.87 16 16 C -0.11 -2.14 9.78 -39.20 -0.38 -2.52 16 17 C -0.09 -1.36 10.02 -39.56 -0.40 -1.76 16 18 C -0.15 -2.19 10.02 -39.54 -0.40 -2.59 16 19 C -0.07 -1.14 9.61 -39.20 -0.38 -1.51 16 20 C -0.12 -2.48 5.90 -104.63 -0.62 -3.10 16 21 C 0.51 10.46 8.23 34.51 0.28 10.75 16 22 O -0.47 -11.48 14.85 -19.26 -0.29 -11.76 16 23 O -0.53 -8.04 12.70 -40.65 -0.52 -8.56 16 24 N -0.45 -11.38 9.92 -5.47 -0.05 -11.43 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.13 3.39 6.29 -52.49 -0.33 3.06 16 30 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 31 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 35 H 0.40 4.35 9.11 45.56 0.42 4.77 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -31.55 310.60 -7.95 -39.49 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.79 Total: 9.22 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -4.56 Total: -15.76 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.55 Total: -30.83 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.80 Total: -20.32 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.55 -7.95 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242879225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.160 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds