Wall clock time and date at job start Tue Mar 31 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52991 * 109.47418 * 2 1 4 4 C 1.50703 * 109.47286 * 239.99300 * 2 1 3 5 5 H 1.07997 * 120.00455 * 241.24328 * 4 2 1 6 6 C 1.37875 * 119.99244 * 61.24763 * 4 2 1 7 7 N 1.31523 * 119.99617 * 194.11027 * 6 4 2 8 8 Si 1.86793 * 120.00540 * 14.10860 * 6 4 2 9 9 H 1.48504 * 109.46900 * 84.53630 * 8 6 4 10 10 H 1.48499 * 109.47391 * 204.53023 * 8 6 4 11 11 H 1.48492 * 109.47373 * 324.53756 * 8 6 4 12 12 C 1.53004 * 109.46692 * 120.00108 * 2 1 3 13 13 N 1.46902 * 109.46959 * 299.99626 * 12 2 1 14 14 C 1.46899 * 111.00155 * 180.02562 * 13 12 2 15 15 H 1.09001 * 109.47083 * 34.99940 * 14 13 12 16 16 C 1.50702 * 109.47206 * 275.00250 * 14 13 12 17 17 O 1.20826 * 119.99561 * 0.02562 * 16 14 13 18 18 O 1.34229 * 120.00133 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47400 * 154.99881 * 14 13 12 20 20 C 1.38419 * 122.54064 * 219.99894 * 19 14 13 21 21 C 1.33398 * 114.91991 * 179.97438 * 20 19 14 22 22 S 1.75876 * 109.59138 * 0.02562 * 21 20 19 23 23 C 1.33387 * 122.53502 * 39.71218 * 19 14 13 24 24 H 1.09003 * 109.47607 * 309.51488 * 1 2 3 25 25 H 1.09004 * 109.47062 * 69.51567 * 1 2 3 26 26 H 1.09003 * 109.47723 * 189.51656 * 1 2 3 27 27 H 1.09003 * 109.47665 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47150 * 299.99806 * 3 2 1 29 29 H 1.08996 * 109.47323 * 59.99592 * 3 2 1 30 30 H 0.96998 * 120.00099 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47177 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.47575 * 59.99832 * 12 2 1 33 33 H 1.00900 * 111.00104 * 56.05021 * 13 12 2 34 34 H 0.96706 * 116.99911 * 179.97438 * 18 16 14 35 35 H 1.07997 * 122.54279 * 0.02562 * 20 19 14 36 36 H 1.07994 * 125.20054 * 179.97438 * 21 20 19 37 37 H 1.07996 * 125.20589 * 0.02562 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6366 -1.6002 -1.1314 6 6 1.7205 -0.2247 -2.4825 7 7 1.9117 -0.9753 -3.5454 8 14 1.0266 1.4995 -2.6692 9 1 2.1413 2.4797 -2.7119 10 1 0.2443 1.5845 -3.9286 11 1 0.1427 1.8050 -1.5158 12 6 2.0398 -0.7213 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0215 -0.6945 3.6704 15 1 3.0236 -1.0903 3.5049 16 6 1.0868 -1.8238 4.0197 17 8 0.1267 -2.0510 3.3222 18 8 1.3213 -2.5778 5.1051 19 6 2.0546 0.2989 4.8031 20 6 3.0753 0.3291 5.7375 21 6 2.9523 1.2709 6.6742 22 16 1.4792 2.1905 6.3959 23 6 1.1051 1.2194 4.9779 24 1 -0.3634 0.6539 0.7928 25 1 -0.3633 0.3596 -0.9627 26 1 -0.3635 -1.0135 0.1699 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6920 -0.6337 -4.4263 31 1 3.1299 -0.7210 1.2496 32 1 1.6765 -1.7489 1.2493 33 1 0.5436 0.0414 2.4402 34 1 0.6937 -3.2903 5.2887 35 1 3.9087 -0.3573 5.7098 36 1 3.6501 1.4418 7.4805 37 1 0.2382 1.3473 4.3468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603576071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:55 Heat of formation + Delta-G solvation = -36.787008 kcal Electronic energy + Delta-G solvation = -20600.807291 eV Core-core repulsion = 17470.745992 eV Total energy + Delta-G solvation = -3130.061300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60351 -38.26796 -37.09368 -36.05876 -33.90728 -31.63206 -29.64727 -27.58628 -26.16784 -25.16854 -24.12206 -23.56825 -21.08825 -19.17257 -18.80541 -18.04800 -17.66872 -17.05929 -16.08535 -15.81832 -15.47054 -14.97054 -14.17143 -13.99617 -13.34418 -13.24918 -12.97520 -12.80776 -12.71446 -12.47181 -12.32715 -12.01488 -11.88120 -11.81037 -11.53890 -11.15190 -10.88775 -10.69005 -10.30935 -10.07301 -10.00523 -9.86107 -8.97122 -8.85989 -8.57312 -8.49425 -8.35377 -8.22841 -6.06560 -4.02320 0.94179 1.56480 1.88248 2.17166 2.55372 3.14324 3.34501 3.43581 3.47307 4.37376 4.45961 4.81837 4.95055 5.09420 5.25484 5.27172 5.34618 5.55431 5.90029 5.90548 6.11523 6.23484 6.30419 6.35574 6.43191 6.47354 6.64305 6.70208 6.81225 6.94102 7.03272 7.23707 7.36379 7.52278 7.65025 7.86633 7.89433 8.55209 8.97491 9.59354 11.06776 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.004872 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.290620 B = 5745.954651 C = 6419.520461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 C -0.136 4.136 4 C -0.512 4.512 5 H 0.071 0.929 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.308 1.308 11 H -0.248 1.248 12 C 0.078 3.922 13 N -0.653 5.653 14 C 0.156 3.844 15 H 0.124 0.876 16 C 0.453 3.547 17 O -0.506 6.506 18 O -0.515 6.515 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.217 4.217 22 S 0.090 5.910 23 C -0.181 4.181 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.351 0.649 34 H 0.403 0.597 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 3.042 21.638 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 C -0.193 4.193 4 C -0.550 4.550 5 H 0.089 0.911 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.050 4.050 13 N -0.286 5.286 14 C 0.040 3.960 15 H 0.141 0.859 16 C 0.292 3.708 17 O -0.393 6.393 18 O -0.325 6.325 19 C -0.101 4.101 20 C -0.145 4.145 21 C -0.352 4.352 22 S 0.354 5.646 23 C -0.317 4.317 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.173 0.827 34 H 0.261 0.739 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.084 4.965 21.895 22.451 hybrid contribution -0.588 -1.569 -0.953 1.928 sum -0.672 3.395 20.942 21.226 Atomic orbital electron populations 1.22286 0.98329 0.99532 0.99900 1.18439 0.92014 0.92505 0.92845 1.22185 1.00486 0.98072 0.98576 1.20819 1.33634 1.12063 0.88443 0.91072 1.24969 0.94706 0.97349 0.95803 1.69968 1.48753 1.35955 0.98702 0.87254 0.79366 0.85549 0.75750 1.21486 1.23750 1.17398 1.22159 0.99382 0.95399 0.88064 1.61093 1.18033 1.49674 0.99841 1.20006 0.98535 0.86920 0.90495 0.85880 1.25045 0.85666 0.82801 0.77294 1.90761 1.29646 1.68783 1.50154 1.84601 1.56639 1.45530 1.45714 1.18387 0.95866 0.98638 0.97160 1.19989 0.99904 0.99940 0.94631 1.25488 1.02284 1.02034 1.05424 1.84229 1.19483 1.36577 1.24334 1.25445 1.04609 1.00280 1.01365 0.95642 0.92803 0.93802 0.93476 0.95059 0.93849 0.92744 0.91304 0.94955 0.82717 0.73893 0.83955 0.81873 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.24 37.15 0.27 -2.90 16 2 C 0.04 0.98 0.57 -155.67 -0.09 0.90 16 3 C -0.14 -2.97 7.54 37.15 0.28 -2.69 16 4 C -0.51 -14.13 8.62 -34.44 -0.30 -14.43 16 5 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 6 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 8 Si 0.89 22.20 22.79 -169.99 -3.87 18.33 16 9 H -0.29 -7.15 7.10 56.52 0.40 -6.74 16 10 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 11 H -0.25 -5.77 4.65 56.52 0.26 -5.51 16 12 C 0.08 1.52 4.26 -3.82 -0.02 1.50 16 13 N -0.65 -10.62 4.86 -109.19 -0.53 -11.15 16 14 C 0.16 2.11 2.79 -70.02 -0.20 1.92 16 15 H 0.12 1.54 7.74 -51.93 -0.40 1.13 16 16 C 0.45 6.29 7.45 36.01 0.27 6.56 16 17 O -0.51 -8.70 16.06 -18.75 -0.30 -9.00 16 18 O -0.51 -5.54 13.34 -39.26 -0.52 -6.07 16 19 C -0.09 -1.07 4.78 -106.25 -0.51 -1.57 16 20 C -0.11 -1.19 9.95 -41.21 -0.41 -1.60 16 21 C -0.22 -2.04 11.23 29.04 0.33 -1.72 16 22 S 0.09 0.90 23.34 -107.50 -2.51 -1.61 16 23 C -0.18 -2.16 10.51 29.04 0.31 -1.86 16 24 H 0.02 0.49 7.06 -51.93 -0.37 0.12 16 25 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 26 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.72 2.26 -51.93 -0.12 0.60 16 29 H 0.04 0.85 7.60 -51.93 -0.39 0.45 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 32 H 0.03 0.67 7.62 -51.93 -0.40 0.28 16 33 H 0.35 5.90 5.77 -39.29 -0.23 5.67 16 34 H 0.40 2.75 9.10 45.56 0.41 3.17 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.16 1.95 7.79 -52.49 -0.41 1.54 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -32.19 309.44 -6.39 -38.58 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.92 Total: 6.85 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.16 Total: -13.88 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.24 Total: -37.87 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.82 Total: -15.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -3.87 Total: 18.33 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.19 -6.39 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603576071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.793 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds