Wall clock time and date at job start Tue Mar 31 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42104 * 110.54517 * 2 1 4 4 O 1.42094 * 110.54395 * 223.24475 * 2 1 3 5 5 C 1.76207 * 104.44632 * 111.62065 * 2 1 3 6 6 C 1.38233 * 119.99995 * 90.00196 * 5 2 1 7 7 C 1.38231 * 120.00191 * 179.97438 * 6 5 2 8 8 C 1.38240 * 119.99606 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99465 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46656 * 90.00471 * 9 8 7 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47332 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99727 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00639 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46560 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47303 * 119.99964 * 17 15 13 20 20 H 1.48499 * 109.46961 * 240.00380 * 17 15 13 21 21 C 1.38225 * 120.00133 * 0.26011 * 8 7 6 22 22 C 1.38235 * 120.00171 * 359.48495 * 21 8 7 23 23 H 1.09003 * 109.46882 * 308.38021 * 1 2 3 24 24 H 1.09005 * 109.46984 * 68.37601 * 1 2 3 25 25 H 1.08995 * 109.46971 * 188.37610 * 1 2 3 26 26 H 1.08005 * 119.99907 * 359.97438 * 6 5 2 27 27 H 1.07996 * 120.00082 * 180.02562 * 7 6 5 28 28 H 1.08990 * 109.47142 * 330.00456 * 9 8 7 29 29 H 1.09004 * 109.46726 * 210.00353 * 9 8 7 30 30 H 1.00896 * 111.00219 * 303.95295 * 10 9 8 31 31 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 32 32 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 33 33 H 1.08995 * 109.47213 * 300.00679 * 12 11 10 34 34 H 1.09008 * 109.47264 * 60.00068 * 12 11 10 35 35 H 0.97001 * 120.00114 * 179.97438 * 16 15 13 36 36 H 1.08008 * 119.99963 * 179.72915 * 21 8 7 37 37 H 1.08001 * 120.00577 * 180.25037 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6287 1.5863 6 6 2.4261 -1.9882 1.7674 7 6 2.7714 -2.4815 3.0117 8 6 2.9438 -1.6151 4.0751 9 6 3.3198 -2.1529 5.4318 10 7 4.7832 -2.2001 5.5513 11 6 5.1875 -2.7200 6.8645 12 6 6.7146 -2.7549 6.9510 13 6 7.1295 -3.2876 8.2982 14 1 6.3789 -3.5732 9.0204 15 6 8.4671 -3.4114 8.6086 16 7 9.3811 -3.0641 7.7290 17 14 8.9813 -4.0724 10.2784 18 1 7.7715 -4.3879 11.0797 19 1 9.7897 -5.3046 10.0954 20 1 9.7914 -3.0496 10.9875 21 6 2.7656 -0.2562 3.8953 22 6 2.4254 0.2375 2.6498 23 1 -0.3633 0.6381 0.8056 24 1 -0.3633 0.3787 -0.9554 25 1 -0.3633 -1.0167 0.1497 26 1 2.2910 -2.6651 0.9367 27 1 2.9066 -3.5436 3.1531 28 1 2.9130 -3.1571 5.5500 29 1 2.9127 -1.5024 6.2060 30 1 5.1895 -2.7450 4.8056 31 1 4.7935 -2.0732 7.6483 32 1 4.7936 -3.7282 6.9931 33 1 7.1083 -3.4018 6.1671 34 1 7.1090 -1.7468 6.8222 35 1 10.3222 -3.1509 7.9474 36 1 2.8960 0.4202 4.7272 37 1 2.2901 1.2996 2.5084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045173689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:26 Heat of formation + Delta-G solvation = -51.323083 kcal Electronic energy + Delta-G solvation = -18965.566719 eV Core-core repulsion = 15834.875088 eV Total energy + Delta-G solvation = -3130.691631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57042 -37.35517 -36.23421 -36.05577 -33.29201 -31.83162 -31.20998 -29.92977 -29.08547 -25.78089 -23.58632 -23.03415 -21.58427 -20.61076 -19.29193 -18.04157 -16.49939 -16.38486 -16.36114 -15.86813 -15.38204 -14.82903 -14.54041 -14.43963 -14.17358 -13.73503 -13.68537 -13.59884 -13.05008 -12.89470 -12.45051 -12.32093 -12.23100 -12.15475 -11.78966 -11.39131 -11.34801 -11.07549 -10.97788 -10.80590 -10.54753 -10.07280 -9.57354 -9.32335 -9.18281 -9.11899 -8.38967 -7.96467 -6.02665 -4.05858 -0.23540 0.64962 1.16584 2.59556 3.23286 3.29226 3.36650 3.40240 3.69147 3.81639 4.36822 4.40672 4.45331 4.59520 4.65576 4.73150 4.93140 5.17283 5.18817 5.21221 5.33322 5.47036 5.50185 5.72016 5.81970 5.90113 6.00677 6.23355 6.27107 6.41791 6.68701 6.89340 7.33574 7.65810 7.73305 7.85882 8.02908 8.38568 9.01523 9.58260 11.08743 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.043847 B = 0.002539 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.428837 B =11025.516164 C =11178.914289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.502 3.498 3 O -0.939 6.939 4 O -0.940 6.940 5 C -0.666 4.666 6 C -0.025 4.025 7 C -0.137 4.137 8 C -0.016 4.016 9 C 0.085 3.915 10 N -0.685 5.685 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.119 4.119 22 C -0.026 4.026 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.339 0.661 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.135 0.865 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.724 4.929 -14.353 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.682 3.318 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.754 4.754 6 C -0.044 4.044 7 C -0.156 4.156 8 C -0.017 4.017 9 C -0.044 4.044 10 N -0.316 5.316 11 C -0.062 4.062 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.139 4.139 22 C -0.045 4.045 23 H 0.150 0.850 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.922 5.847 -14.808 26.290 hybrid contribution -0.223 -1.635 1.578 2.283 sum -21.145 4.212 -13.230 25.296 Atomic orbital electron populations 1.30238 1.26116 1.12003 1.11708 1.05042 0.77670 0.74613 0.74435 1.93589 1.77193 1.36636 1.86184 1.93584 1.77218 1.61669 1.61214 1.30383 1.20250 1.03039 1.21699 1.20868 0.92890 0.93129 0.97517 1.21232 1.01476 1.00260 0.92639 1.20336 0.91847 0.93844 0.95649 1.21053 0.91155 0.99341 0.92809 1.60658 1.05158 1.59362 1.06470 1.22213 1.00355 0.95796 0.87825 1.19078 0.87513 0.97918 0.96774 1.21186 0.91798 1.43017 1.00144 0.92681 1.25016 0.96755 0.95547 0.97092 1.69985 1.00603 1.48006 1.34524 0.86517 0.78585 0.78624 0.84145 1.19780 1.21002 1.20938 1.21223 0.99855 0.95149 0.97634 1.20930 0.92771 0.99238 0.91526 0.85007 0.85164 0.85042 0.84287 0.85172 0.94341 0.89972 0.84323 0.92120 0.96428 0.96755 0.95568 0.92972 0.84719 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.36 10.80 101.05 1.09 -1.27 16 2 S 2.50 20.61 5.80 -107.50 -0.62 19.98 16 3 O -0.94 -10.89 17.13 -57.54 -0.99 -11.87 16 4 O -0.94 -10.83 17.13 -57.54 -0.99 -11.81 16 5 C -0.67 -6.59 5.66 -39.58 -0.22 -6.81 16 6 C -0.03 -0.26 9.47 -39.59 -0.37 -0.63 16 7 C -0.14 -1.51 9.70 -39.58 -0.38 -1.89 16 8 C -0.02 -0.20 5.39 -104.62 -0.56 -0.76 16 9 C 0.09 1.15 5.81 -4.97 -0.03 1.12 16 10 N -0.69 -11.86 6.49 -115.05 -0.75 -12.61 16 11 C 0.07 1.35 5.62 -3.82 -0.02 1.32 16 12 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 13 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.12 -1.37 9.70 -39.59 -0.38 -1.76 16 22 C -0.03 -0.27 9.47 -39.58 -0.37 -0.64 16 23 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 24 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 25 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.14 1.14 7.57 -52.48 -0.40 0.74 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.34 5.79 8.72 -39.29 -0.34 5.44 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.14 1.18 7.57 -52.49 -0.40 0.78 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -36.07 331.31 -9.78 -45.85 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.32 Total: -0.54 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.82 Total: -24.34 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.01 Total: -38.82 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -1.97 Total: -23.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 20.61 SS G_CDS: -0.62 Total: 19.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.07 -9.78 -45.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045173689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.473 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds