Wall clock time and date at job start Tue Mar 31 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00530 * 2 1 4 4 C 1.52993 * 109.47279 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47227 * 65.00392 * 4 3 2 6 6 C 1.46508 * 119.99855 * 270.00176 * 5 4 3 7 7 C 1.50704 * 109.46858 * 269.99621 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47109 * 59.99979 * 11 9 7 13 13 H 1.48496 * 109.47229 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46912 * 300.00234 * 11 9 7 15 15 C 1.34774 * 120.00515 * 90.00025 * 5 4 3 16 16 O 1.21283 * 120.00315 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99429 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 5 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.09005 * 109.47079 * 59.99792 * 1 2 3 24 24 H 1.08990 * 109.47525 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47092 * 300.00118 * 1 2 3 26 26 H 1.09007 * 109.46713 * 59.99856 * 3 2 1 27 27 H 1.09001 * 109.46933 * 300.00455 * 3 2 1 28 28 H 1.08998 * 109.47295 * 305.00278 * 4 3 2 29 29 H 1.09004 * 109.47320 * 185.00190 * 4 3 2 30 30 H 1.08999 * 109.46951 * 29.99220 * 6 5 4 31 31 H 1.08994 * 109.47372 * 150.00041 * 6 5 4 32 32 H 0.97006 * 120.00003 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.47203 * 60.00330 * 17 15 5 34 34 H 1.09003 * 109.47454 * 299.99901 * 17 15 5 35 35 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 36 36 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 37 37 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8923 -1.3429 7 6 5.5009 -1.2981 -0.9451 8 1 6.2195 -0.5462 -0.6539 9 6 5.8601 -2.6292 -0.9519 10 7 4.9849 -3.5447 -1.3061 11 14 7.5900 -3.1323 -0.4582 12 1 7.8529 -2.6969 0.9370 13 1 7.7213 -4.6086 -0.5496 14 1 8.5712 -2.4911 -1.3700 15 6 4.2616 1.3336 -2.3218 16 8 4.6255 0.8201 -3.3586 17 6 4.1279 2.8318 -2.2293 18 6 4.5035 3.4521 -3.5504 19 6 3.5791 3.6813 -4.5549 20 6 4.0767 4.2377 -5.6604 21 16 5.8043 4.5018 -5.4615 22 6 5.7517 3.8224 -3.8400 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8514 0.5680 0.8409 29 1 3.9787 2.1763 0.0890 30 1 3.3851 -1.3631 -0.6735 31 1 3.9119 -1.2116 -2.3669 32 1 5.2377 -4.4812 -1.3112 33 1 4.7899 3.2082 -1.4494 34 1 3.0970 3.0904 -1.9869 35 1 2.5350 3.4250 -4.4531 36 1 3.5062 4.4871 -6.5429 37 1 6.6006 3.7198 -3.1803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:10 Heat of formation + Delta-G solvation = -43.716680 kcal Electronic energy + Delta-G solvation = -20240.504922 eV Core-core repulsion = 17110.143129 eV Total energy + Delta-G solvation = -3130.361793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.43061 -37.83029 -37.16086 -34.72550 -32.67268 -30.97518 -29.54091 -28.21109 -26.61092 -25.88477 -23.44483 -22.68330 -22.15492 -18.91301 -18.20935 -17.40644 -16.72577 -16.38162 -15.99391 -15.55129 -15.32681 -14.80383 -14.69376 -14.09129 -13.92250 -13.12292 -12.88312 -12.80425 -12.53930 -12.20665 -12.02503 -11.85773 -11.79173 -11.64783 -11.37225 -11.16196 -10.87588 -10.79943 -10.64780 -10.34528 -10.07559 -9.54649 -9.42868 -8.92026 -8.59357 -8.32330 -8.17045 -7.56462 -5.93581 -3.97661 1.18669 1.82698 2.12599 2.85711 3.36916 3.41276 3.42839 3.49546 4.01484 4.10999 4.52990 4.97658 5.10331 5.16992 5.25731 5.38558 5.40952 5.45585 5.49090 5.52091 5.58018 5.62501 5.65912 5.75511 5.80700 5.86814 6.16789 6.25460 6.54488 6.63624 7.30196 7.41631 7.62030 7.67546 8.04307 8.36456 8.53641 9.00681 9.19045 9.66109 11.14409 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.005693 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.594263 B = 4917.372705 C = 6626.604507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.591 5.591 6 C 0.251 3.749 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.504 3.496 16 O -0.531 6.531 17 C -0.086 4.086 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.216 4.216 21 S 0.079 5.921 22 C -0.196 4.196 23 H 0.035 0.965 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 16.998 -0.056 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.323 5.323 6 C 0.132 3.868 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.290 3.710 16 O -0.407 6.407 17 C -0.129 4.129 18 C -0.088 4.088 19 C -0.147 4.147 20 C -0.351 4.351 21 S 0.342 5.658 22 C -0.332 4.332 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.179 0.821 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.007 16.933 -1.572 17.728 hybrid contribution -0.419 -0.773 1.223 1.506 sum -5.427 16.160 -0.349 17.050 Atomic orbital electron populations 1.22699 0.82068 1.02611 0.99081 1.88111 1.18696 1.26933 1.95121 1.23125 0.95419 0.85459 0.99462 1.21517 0.91147 0.99003 0.89731 1.48180 1.64501 1.09847 1.09738 1.19285 0.96615 0.72157 0.98784 1.21435 0.97508 0.92155 1.45309 0.92774 1.24909 0.97272 0.96441 0.95434 1.69937 1.34317 1.00969 1.48077 0.86614 0.84925 0.77300 0.78871 1.20324 1.21238 1.20331 1.20192 0.78701 0.87899 0.84252 1.90690 1.46017 1.74750 1.29288 1.20529 1.03216 0.94192 0.94970 1.18412 0.92845 1.00641 0.96935 1.20013 1.00931 1.00777 0.92997 1.25440 0.97211 1.09524 1.02966 1.84046 1.06981 1.62149 1.12673 1.25363 1.00681 1.07705 0.99409 0.94625 0.89774 0.94682 0.93078 0.93764 0.88986 0.90068 0.93689 0.94389 0.92826 0.88616 0.88899 0.84571 0.82148 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.32 9.53 -35.23 -0.34 -6.66 16 3 C 0.04 0.60 6.28 37.15 0.23 0.83 16 4 C 0.11 1.76 5.62 -4.05 -0.02 1.73 16 5 N -0.59 -12.56 2.42 -175.05 -0.42 -12.98 16 6 C 0.25 6.76 4.98 -5.19 -0.03 6.73 16 7 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 8 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 11 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.50 10.49 7.67 -10.98 -0.08 10.40 16 16 O -0.53 -13.72 15.61 5.56 0.09 -13.63 16 17 C -0.09 -1.26 4.51 -29.03 -0.13 -1.39 16 18 C -0.08 -1.15 4.29 -106.25 -0.46 -1.61 16 19 C -0.12 -1.63 9.98 -41.21 -0.41 -2.04 16 20 C -0.22 -2.74 11.23 29.04 0.33 -2.41 16 21 S 0.08 1.01 23.34 -107.50 -2.51 -1.50 16 22 C -0.20 -2.86 10.98 29.04 0.32 -2.54 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.57 7.30 -51.93 -0.38 0.19 16 28 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 29 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 30 H 0.05 1.26 7.11 -51.93 -0.37 0.89 16 31 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.10 1.18 7.38 -51.93 -0.38 0.79 16 34 H 0.09 1.10 7.25 -51.93 -0.38 0.72 16 35 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -35.64 330.26 -7.20 -42.84 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.15 Total: -1.12 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 0.44 Total: -2.63 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.31 Total: -39.60 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.25 Total: -20.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.64 -7.20 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.878 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds