Wall clock time and date at job start Tue Mar 31 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00530 * 2 1 4 4 C 1.52993 * 109.47279 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47227 * 65.00392 * 4 3 2 6 6 C 1.46508 * 119.99855 * 270.00176 * 5 4 3 7 7 C 1.50704 * 109.46858 * 269.99621 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00109 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47109 * 59.99979 * 11 9 7 13 13 H 1.48496 * 109.47229 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46912 * 300.00234 * 11 9 7 15 15 C 1.34774 * 120.00515 * 90.00025 * 5 4 3 16 16 O 1.21283 * 120.00315 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99429 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46698 * 180.02562 * 17 15 5 19 19 C 1.38425 * 122.53762 * 90.00158 * 18 17 15 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97431 * 18 17 15 23 23 H 1.09005 * 109.47079 * 59.99792 * 1 2 3 24 24 H 1.08990 * 109.47525 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47092 * 300.00118 * 1 2 3 26 26 H 1.09007 * 109.46713 * 59.99856 * 3 2 1 27 27 H 1.09001 * 109.46933 * 300.00455 * 3 2 1 28 28 H 1.08998 * 109.47295 * 305.00278 * 4 3 2 29 29 H 1.09004 * 109.47320 * 185.00190 * 4 3 2 30 30 H 1.08999 * 109.46951 * 29.99220 * 6 5 4 31 31 H 1.08994 * 109.47372 * 150.00041 * 6 5 4 32 32 H 0.97006 * 120.00003 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.47203 * 60.00330 * 17 15 5 34 34 H 1.09003 * 109.47454 * 299.99901 * 17 15 5 35 35 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 36 36 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 37 37 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8923 -1.3429 7 6 5.5009 -1.2981 -0.9451 8 1 6.2195 -0.5462 -0.6539 9 6 5.8601 -2.6292 -0.9519 10 7 4.9849 -3.5447 -1.3061 11 14 7.5900 -3.1323 -0.4582 12 1 7.8529 -2.6969 0.9370 13 1 7.7213 -4.6086 -0.5496 14 1 8.5712 -2.4911 -1.3700 15 6 4.2616 1.3336 -2.3218 16 8 4.6255 0.8201 -3.3586 17 6 4.1279 2.8318 -2.2293 18 6 4.5035 3.4521 -3.5504 19 6 3.5791 3.6813 -4.5549 20 6 4.0767 4.2377 -5.6604 21 16 5.8043 4.5018 -5.4615 22 6 5.7517 3.8224 -3.8400 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8514 0.5680 0.8409 29 1 3.9787 2.1763 0.0890 30 1 3.3851 -1.3631 -0.6735 31 1 3.9119 -1.2116 -2.3669 32 1 5.2377 -4.4812 -1.3112 33 1 4.7899 3.2082 -1.4494 34 1 3.0970 3.0904 -1.9869 35 1 2.5350 3.4250 -4.4531 36 1 3.5062 4.4871 -6.5429 37 1 6.6006 3.7198 -3.1803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:09 Heat of formation + Delta-G solvation = -67.915904 kcal Electronic energy + Delta-G solvation = -20241.554279 eV Core-core repulsion = 17110.143129 eV Total energy + Delta-G solvation = -3131.411150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92511 -38.96946 -38.41867 -36.41805 -34.79115 -32.25092 -30.98022 -29.54967 -28.25793 -27.05742 -25.07134 -24.04041 -23.55336 -20.28353 -19.45347 -18.63209 -18.46711 -18.05882 -17.28267 -16.95271 -16.64941 -16.37050 -16.04363 -15.63633 -15.30751 -14.52243 -14.38558 -13.92517 -13.80648 -13.68866 -13.39938 -13.31234 -13.02366 -12.94269 -12.83837 -12.69648 -12.53545 -12.47834 -12.15178 -11.87772 -11.67159 -11.66912 -10.62444 -10.59432 -10.47758 -9.65214 -9.35366 -9.22817 -8.17326 -6.32234 0.14283 0.82122 1.10209 1.36009 1.40963 1.47963 1.74293 1.91712 2.36999 2.58719 3.02400 3.12050 3.81449 3.99521 4.08361 4.20315 4.31903 4.39888 4.50144 4.52458 4.55607 4.57993 4.64652 4.67629 4.77507 4.88728 5.01810 5.14855 5.24762 5.32013 5.51555 5.58201 5.62040 5.92407 6.13187 6.39390 6.76905 6.90122 7.33137 7.57466 8.89525 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.005693 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.594263 B = 4917.372705 C = 6626.604507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.043 3.957 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.273 3.727 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.259 1.259 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.496 3.504 16 O -0.594 6.594 17 C -0.070 4.070 18 C -0.094 4.094 19 C -0.138 4.138 20 C -0.214 4.214 21 S 0.096 5.904 22 C -0.218 4.218 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.026 0.974 31 H -0.016 1.016 32 H 0.265 0.735 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.148 0.852 36 H 0.188 0.812 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 19.314 1.017 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.034 4.034 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.151 3.849 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.183 1.183 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.285 3.715 16 O -0.475 6.475 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.168 4.168 20 C -0.349 4.349 21 S 0.359 5.641 22 C -0.353 4.353 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.044 0.956 31 H 0.002 0.998 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.205 0.795 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.895 19.300 -0.454 19.917 hybrid contribution -0.510 -1.473 0.842 1.772 sum -5.405 17.827 0.387 18.632 Atomic orbital electron populations 1.22840 0.80127 1.02937 1.00848 1.88050 1.21085 1.29245 1.95533 1.23226 0.93461 0.84721 1.01975 1.21920 0.93277 1.00403 0.86363 1.48149 1.64642 1.07710 1.12218 1.18588 0.95358 0.76188 0.94769 1.21751 0.98348 0.92579 1.45332 0.92793 1.25881 1.01827 0.96457 0.95214 1.70080 1.36620 1.01373 1.48951 0.85490 0.79076 0.77127 0.79233 1.18299 1.20444 1.20377 1.21299 0.76890 0.90462 0.82861 1.90652 1.48737 1.76471 1.31606 1.20501 1.06117 0.88585 0.96012 1.18622 0.93361 1.01149 0.97573 1.20238 1.01616 1.01619 0.93349 1.25843 0.97275 1.08321 1.03485 1.83956 1.07232 1.61409 1.11496 1.25636 1.00929 1.08151 1.00598 0.93713 0.90388 0.91878 0.88902 0.92552 0.90761 0.85360 0.95589 0.99766 0.92606 0.85628 0.85426 0.83436 0.79528 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.42 -14.17 9.53 -148.98 -1.42 -15.59 16 3 C 0.04 1.08 6.28 71.98 0.45 1.54 16 4 C 0.10 3.08 5.62 86.38 0.49 3.57 16 5 N -0.60 -25.58 2.42 -826.14 -2.00 -27.58 16 6 C 0.27 15.44 4.98 85.63 0.43 15.87 16 7 C -0.54 -32.34 9.39 25.60 0.24 -32.10 16 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.00 0.28 5.46 84.65 0.46 0.74 16 10 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 11 Si 0.97 46.31 29.54 68.60 2.03 48.34 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 C 0.50 20.64 7.67 87.66 0.67 21.31 16 16 O -0.59 -31.78 15.61 -3.04 -0.05 -31.83 16 17 C -0.07 -1.88 4.51 29.10 0.13 -1.75 16 18 C -0.09 -2.70 4.29 -20.92 -0.09 -2.79 16 19 C -0.14 -3.64 9.98 21.22 0.21 -3.43 16 20 C -0.21 -5.01 11.23 66.72 0.75 -4.26 16 21 S 0.10 2.31 23.34 -56.49 -1.32 0.99 16 22 C -0.22 -6.08 10.98 66.72 0.73 -5.35 16 23 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.27 7.30 -2.39 -0.02 1.25 16 28 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 29 H 0.13 2.57 6.44 -2.38 -0.02 2.56 16 30 H 0.03 1.55 7.11 -2.39 -0.02 1.53 16 31 H -0.02 -1.05 7.42 -2.39 -0.02 -1.07 16 32 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 33 H 0.13 2.60 7.38 -2.39 -0.02 2.59 16 34 H 0.13 2.52 7.25 -2.39 -0.02 2.50 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -82.59 330.26 4.31 -78.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.06 Total: 10.59 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.72 Total: -4.72 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.71 Total: -86.07 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.47 Total: -47.41 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.32 Total: 0.99 kcal Total: -82.59 4.31 -78.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -82.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds