Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00417 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00360 * 3 2 1 7 7 C 1.39104 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99508 * 179.97438 * 7 2 1 9 9 N 1.36730 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99790 * 179.97438 * 9 7 2 11 11 O 1.21783 * 120.00075 * 0.02562 * 10 9 7 12 12 C 1.46113 * 120.00353 * 180.27755 * 10 9 7 13 13 C 1.35106 * 120.00680 * 179.72976 * 12 10 9 14 14 C 1.46977 * 120.00321 * 179.97438 * 13 12 10 15 15 C 1.39993 * 120.10735 * 359.72429 * 14 13 12 16 16 C 1.37653 * 119.88728 * 179.81144 * 15 14 13 17 17 C 1.39080 * 120.11360 * 0.43965 * 16 15 14 18 18 N 1.39895 * 119.89550 * 179.76351 * 17 16 15 19 19 C 1.37147 * 126.48195 * 359.73967 * 18 17 16 20 20 C 1.34635 * 106.83273 * 179.84018 * 19 18 17 21 21 N 1.34154 * 108.20858 * 0.41976 * 20 19 18 22 22 C 1.30500 * 109.36144 * 359.73454 * 21 20 19 23 23 C 1.39092 * 120.21554 * 359.78763 * 17 16 15 24 24 C 1.37654 * 120.10545 * 0.02562 * 23 17 16 25 25 H 0.96996 * 120.00287 * 359.97438 * 1 2 3 26 26 H 0.96990 * 120.00481 * 0.02562 * 9 7 2 27 27 H 1.08001 * 119.99342 * 359.72236 * 12 10 9 28 28 H 1.08002 * 119.99447 * 359.97438 * 13 12 10 29 29 H 1.08003 * 120.05069 * 359.97438 * 15 14 13 30 30 H 1.08007 * 119.94221 * 180.20291 * 16 15 14 31 31 H 1.08006 * 126.58231 * 359.96548 * 19 18 17 32 32 H 1.07997 * 125.89087 * 180.15418 * 20 19 18 33 33 H 1.08003 * 125.71498 * 179.97438 * 22 21 20 34 34 H 1.07995 * 119.94760 * 179.97438 * 23 17 16 35 35 H 1.08008 * 120.05348 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.7073 1.3464 0.0006 5 1 1.8885 2.3964 -1.2124 6 1 1.8886 2.3964 1.2126 7 6 2.0088 -1.2047 -0.0005 8 1 3.0888 -1.2046 -0.0010 9 7 1.3251 -2.3888 -0.0005 10 6 1.9990 -3.5560 -0.0016 11 8 3.2169 -3.5560 -0.0021 12 6 1.2686 -4.8214 -0.0077 13 6 1.9440 -5.9915 -0.0143 14 6 1.2092 -7.2643 -0.0199 15 6 -0.1907 -7.2670 -0.0126 16 6 -0.8744 -8.4617 -0.0218 17 6 -0.1768 -9.6649 -0.0291 18 7 -0.8762 -10.8764 -0.0334 19 6 -2.2389 -11.0313 -0.0263 20 6 -2.4808 -12.3557 -0.0378 21 7 -1.3025 -12.9970 -0.0423 22 6 -0.3339 -12.1225 -0.0397 23 6 1.2141 -9.6675 -0.0316 24 6 1.9069 -8.4780 -0.0263 25 1 -0.4850 0.8400 0.0004 26 1 0.3552 -2.3888 -0.0005 27 1 0.1886 -4.8214 -0.0069 28 1 3.0241 -5.9914 -0.0154 29 1 -0.7333 -6.3332 -0.0024 30 1 -1.9545 -8.4648 -0.0195 31 1 -2.9764 -10.2423 -0.0157 32 1 -3.4552 -12.8213 -0.0385 33 1 0.7217 -12.3508 -0.0418 34 1 1.7515 -10.6043 -0.0368 35 1 2.9869 -8.4810 -0.0286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104351575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = 69.541468 kcal Electronic energy + Delta-G solvation = -19684.694734 eV Core-core repulsion = 16456.092982 eV Total energy + Delta-G solvation = -3228.601751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52846 -39.41050 -38.20484 -35.05745 -34.14288 -32.41595 -31.50517 -31.42670 -29.77493 -28.57383 -25.60569 -24.09443 -23.39370 -21.84260 -20.85250 -20.55101 -18.89422 -18.71936 -17.89992 -16.66264 -15.70880 -15.54617 -15.42368 -14.99749 -14.66967 -14.36107 -13.97157 -13.90147 -13.78462 -13.53504 -13.37159 -13.11292 -12.88416 -12.17109 -11.77375 -11.55897 -11.29234 -11.13127 -10.99037 -10.49361 -10.41429 -10.35675 -9.81184 -9.53161 -9.32163 -8.88717 -8.56232 -8.19711 -7.85845 -6.68389 -3.96704 0.33848 1.10887 1.69368 2.42983 2.43808 2.86506 3.08335 3.15309 3.22610 3.65670 4.00455 4.28359 4.31200 4.37860 4.47123 4.63663 4.66085 4.90348 5.07796 5.11723 5.18785 5.19698 5.36825 5.41420 5.53396 5.66882 5.75872 6.03088 6.11011 6.18369 6.23991 6.42906 6.55177 6.84004 6.86206 7.01783 7.31561 7.71853 7.86939 8.40720 8.96157 9.32286 9.90861 10.47918 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.047000 B = 0.002496 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.602037 B =11215.437756 C =11801.176961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.291 4.291 8 H 0.110 0.890 9 N -0.538 5.538 10 C 0.445 3.555 11 O -0.605 6.605 12 C -0.140 4.140 13 C -0.101 4.101 14 C -0.039 4.039 15 C -0.093 4.093 16 C -0.124 4.124 17 C 0.112 3.888 18 N -0.404 5.404 19 C -0.053 4.053 20 C -0.027 4.027 21 N -0.489 5.489 22 C 0.185 3.815 23 C -0.128 4.128 24 C -0.086 4.086 25 H 0.277 0.723 26 H 0.394 0.606 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.208 0.792 34 H 0.131 0.869 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -17.435 -0.042 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.421 4.421 8 H 0.128 0.872 9 N -0.170 5.170 10 C 0.236 3.764 11 O -0.494 6.494 12 C -0.162 4.162 13 C -0.123 4.123 14 C -0.040 4.040 15 C -0.112 4.112 16 C -0.144 4.144 17 C 0.020 3.980 18 N -0.082 5.082 19 C -0.184 4.184 20 C -0.174 4.174 21 N -0.206 5.206 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.105 4.105 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.195 0.805 32 H 0.191 0.809 33 H 0.224 0.776 34 H 0.148 0.852 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.132 -17.988 -0.047 18.457 hybrid contribution -0.532 1.741 0.006 1.821 sum -4.664 -16.247 -0.041 16.903 Atomic orbital electron populations 1.69581 1.06237 1.28883 1.47619 1.25451 0.95713 1.00314 0.96685 0.85704 0.79848 0.80342 0.77989 1.18875 1.20415 1.20420 1.19935 0.93917 0.82249 1.45950 0.87245 1.41941 1.09486 1.05067 1.60502 1.17739 0.87874 0.83838 0.86979 1.90658 1.13346 1.87292 1.58067 1.23249 0.99450 0.93837 0.99665 1.21964 1.00067 0.89510 1.00717 1.19264 0.92897 0.93642 0.98180 1.21347 0.93657 0.97793 0.98412 1.20734 1.00075 0.90539 1.03059 1.17874 0.91542 0.83837 1.04768 1.43180 1.06605 1.06046 1.52402 1.22807 0.84059 0.99876 1.11641 1.22348 0.97322 0.90238 1.07451 1.70320 0.98706 1.32540 1.19055 1.25262 1.00441 0.78389 1.05471 1.20688 0.91122 0.99381 1.03565 1.21216 1.00374 0.90539 0.98374 0.91314 0.77188 0.86759 0.84823 0.84377 0.85225 0.80540 0.80945 0.77564 0.85157 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.80 13.05 55.50 0.72 -22.07 16 2 C 0.02 0.57 5.50 -17.44 -0.10 0.48 16 3 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.29 -7.80 9.67 -15.05 -0.15 -7.95 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.54 -13.28 5.27 -12.34 -0.07 -13.35 16 10 C 0.45 10.49 7.68 -13.10 -0.10 10.39 16 11 O -0.61 -16.42 15.80 5.11 0.08 -16.34 16 12 C -0.14 -2.49 9.40 -37.54 -0.35 -2.85 16 13 C -0.10 -1.59 9.46 -37.16 -0.35 -1.94 16 14 C -0.04 -0.50 5.87 -105.04 -0.62 -1.11 16 15 C -0.09 -1.07 9.40 -39.14 -0.37 -1.44 16 16 C -0.12 -1.28 9.45 -39.48 -0.37 -1.65 16 17 C 0.11 1.18 6.64 -83.55 -0.55 0.62 16 18 N -0.40 -4.20 2.98 -62.03 -0.19 -4.38 16 19 C -0.05 -0.50 10.84 -16.45 -0.18 -0.68 16 20 C -0.03 -0.28 11.85 -17.81 -0.21 -0.49 16 21 N -0.49 -5.85 11.24 -14.46 -0.16 -6.02 16 22 C 0.19 1.90 11.91 -89.59 -1.07 0.83 16 23 C -0.13 -1.23 9.44 -39.48 -0.37 -1.60 16 24 C -0.09 -0.92 9.79 -39.14 -0.38 -1.30 16 25 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.39 9.16 7.87 -40.82 -0.32 8.84 16 27 H 0.11 1.68 6.07 -52.49 -0.32 1.36 16 28 H 0.13 2.23 7.52 -52.49 -0.39 1.83 16 29 H 0.14 1.45 6.16 -52.48 -0.32 1.12 16 30 H 0.13 1.06 6.79 -52.48 -0.36 0.70 16 31 H 0.18 1.18 7.13 -52.48 -0.37 0.80 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.21 1.41 7.05 -52.48 -0.37 1.04 16 34 H 0.13 0.91 6.74 -52.49 -0.35 0.55 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -32.12 313.03 -8.25 -40.37 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -3.17 Total: 10.84 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -5.17 Total: -8.70 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.31 Total: -45.82 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.08 Total: -16.34 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.12 -8.25 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104351575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.914 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds