Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47001 * 185.25768 * 3 2 1 5 5 C 1.37091 * 120.00301 * 264.23456 * 4 3 2 6 6 H 1.08001 * 119.99877 * 197.71959 * 5 4 3 7 7 C 1.38949 * 120.00330 * 17.71966 * 5 4 3 8 8 N 1.31410 * 119.99665 * 21.41595 * 7 5 4 9 9 Si 1.86800 * 120.00280 * 201.42134 * 7 5 4 10 10 H 1.48497 * 109.46944 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47004 * 119.99703 * 9 7 5 12 12 H 1.48504 * 109.46618 * 239.99620 * 9 7 5 13 13 C 1.34784 * 119.99534 * 84.23261 * 4 3 2 14 14 O 1.21293 * 119.99589 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00155 * 0.02562 * 13 4 3 16 16 N 1.46505 * 109.47224 * 180.02562 * 15 13 4 17 17 C 1.36825 * 125.05892 * 265.30198 * 16 15 13 18 18 C 1.34241 * 109.92993 * 180.14651 * 17 16 15 19 19 C 1.46490 * 106.99004 * 359.60282 * 18 17 16 20 20 C 1.39635 * 134.02564 * 180.21737 * 19 18 17 21 21 C 1.36623 * 119.76441 * 179.97438 * 20 19 18 22 22 C 1.38829 * 120.52716 * 0.04119 * 21 20 19 23 23 C 1.37752 * 120.66671 * 359.97438 * 22 21 20 24 24 C 1.37688 * 125.05997 * 84.99754 * 16 15 13 25 25 H 1.08998 * 109.47150 * 65.26208 * 3 2 1 26 26 H 1.09004 * 109.47531 * 305.26056 * 3 2 1 27 27 H 0.97004 * 120.00485 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47449 * 59.99954 * 15 13 4 29 29 H 1.09005 * 109.47233 * 300.00193 * 15 13 4 30 30 H 1.07998 * 125.04128 * 0.02704 * 17 16 15 31 31 H 1.07993 * 126.50667 * 179.86762 * 18 17 16 32 32 H 1.08002 * 120.11578 * 0.02562 * 20 19 18 33 33 H 1.07999 * 119.73447 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.66289 * 179.97438 * 22 21 20 35 35 H 1.07995 * 120.10910 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3763 0.1266 5 6 3.4363 2.0887 -0.9941 6 1 4.0522 2.9715 -0.9062 7 6 2.9892 1.6751 -2.2429 8 7 1.9360 0.8949 -2.3384 9 14 3.8851 2.2277 -3.7860 10 1 5.0302 3.0951 -3.4097 11 1 4.3852 1.0381 -4.5209 12 1 2.9518 2.9896 -4.6542 13 6 3.2094 1.9415 1.3449 14 8 3.6136 3.0803 1.4497 15 6 2.8355 1.1582 2.5768 16 7 3.0462 1.9879 3.7657 17 6 4.1780 1.9865 4.5346 18 6 4.0445 2.8577 5.5471 19 6 2.7225 3.4738 5.4101 20 6 2.0206 4.4370 6.1377 21 6 0.7676 4.8082 5.7393 22 6 0.1858 4.2347 4.6169 23 6 0.8602 3.2825 3.8848 24 6 2.1372 2.8895 4.2723 25 1 2.9715 -0.4292 -0.9333 26 1 2.9717 -0.5925 0.8391 27 1 1.6240 0.6058 -3.2102 28 1 3.4568 0.2649 2.6419 29 1 1.7865 0.8677 2.5182 30 1 5.0490 1.3737 4.3549 31 1 4.7748 3.0680 6.3143 32 1 2.4671 4.8876 7.0119 33 1 0.2254 5.5536 6.3021 34 1 -0.8057 4.5382 4.3147 35 1 0.3988 2.8419 3.0134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126545007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = 76.078650 kcal Electronic energy + Delta-G solvation = -21468.090452 eV Core-core repulsion = 18239.772174 eV Total energy + Delta-G solvation = -3228.318278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03928 -38.87879 -36.71113 -35.87099 -34.48708 -32.62590 -31.90605 -30.11173 -28.58450 -27.70414 -26.85125 -24.51487 -22.38623 -21.29838 -20.38938 -19.26878 -18.09864 -16.92256 -16.68381 -16.39577 -16.09640 -15.15887 -14.94895 -14.33387 -14.25053 -13.87238 -13.51800 -13.41063 -13.17106 -12.79298 -12.73779 -12.34769 -12.20985 -11.86648 -11.67306 -11.48308 -11.34426 -11.23930 -11.16619 -10.73007 -10.55838 -10.46528 -10.44400 -9.42880 -9.40182 -8.81473 -8.20050 -7.82832 -7.31890 -6.63516 -4.13564 1.45810 1.96167 2.91119 2.99285 3.15147 3.16797 3.22708 3.36925 3.62270 3.80855 4.00938 4.24959 4.60591 4.74189 4.94566 4.97917 5.04944 5.10015 5.29397 5.33726 5.40254 5.47073 5.71308 5.80215 5.88187 5.96717 6.08356 6.21533 6.33915 6.37151 6.77343 6.89471 7.08071 7.12496 7.35074 7.52805 7.56698 7.76022 8.13114 8.57462 8.84614 9.02724 9.53505 10.42060 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.004885 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.934001 B = 5730.645883 C = 5961.504260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.240 3.760 3 C 0.218 3.782 4 N -0.438 5.438 5 C -0.314 4.314 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.875 5.875 9 Si 0.928 3.072 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.432 3.568 14 O -0.552 6.552 15 C 0.092 3.908 16 N -0.459 5.459 17 C 0.067 3.933 18 C -0.216 4.216 19 C -0.109 4.109 20 C -0.078 4.078 21 C -0.152 4.152 22 C -0.107 4.107 23 C -0.117 4.117 24 C 0.113 3.887 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.275 0.725 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -2.566 11.057 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.079 4.079 3 C 0.090 3.910 4 N -0.159 5.159 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.514 5.514 9 Si 0.754 3.246 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.219 3.781 14 O -0.432 6.432 15 C -0.034 4.034 16 N -0.140 5.140 17 C -0.059 4.059 18 C -0.241 4.241 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.171 4.171 22 C -0.127 4.127 23 C -0.138 4.138 24 C 0.007 3.993 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.522 -2.284 10.658 11.005 hybrid contribution 0.634 0.126 -1.278 1.432 sum 2.156 -2.159 9.380 9.863 Atomic orbital electron populations 1.80930 1.13491 1.08330 1.11743 1.29290 0.95357 0.92616 0.90593 1.18794 0.81737 0.86048 1.04398 1.43670 1.56386 1.10435 1.05400 1.19765 1.30083 1.11755 0.82453 0.87267 1.25300 0.94903 0.97194 0.99642 1.69853 1.19749 1.35668 1.26113 0.85826 0.79605 0.78626 0.80512 1.19029 1.20310 1.20768 1.20319 0.85516 0.87947 0.84338 1.90628 1.49210 1.17948 1.85461 1.21699 1.03833 0.93602 0.84296 1.43468 1.13531 1.34391 1.22582 1.21736 0.90209 1.01537 0.92419 1.21521 0.97020 1.02838 1.02672 1.19173 0.95445 0.99917 0.96862 1.20162 0.94248 0.96280 0.98943 1.20522 0.96051 1.02109 0.98436 1.20718 0.99580 0.96777 0.95591 1.20080 0.92643 1.00201 1.00835 1.18167 0.92252 0.93614 0.95253 0.85091 0.89895 0.91483 0.87346 0.88233 0.81773 0.83921 0.86541 0.86555 0.86215 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.51 18.54 42.15 0.78 -9.72 16 2 C 0.24 4.96 12.95 -20.76 -0.27 4.69 16 3 C 0.22 3.95 4.91 -6.83 -0.03 3.92 16 4 N -0.44 -9.63 2.60 -117.94 -0.31 -9.93 16 5 C -0.31 -7.79 9.32 -14.94 -0.14 -7.93 16 6 H 0.11 2.92 7.39 -52.49 -0.39 2.53 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.72 16 8 N -0.88 -21.23 9.48 55.50 0.53 -20.70 16 9 Si 0.93 19.06 29.60 -169.99 -5.03 14.02 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.43 9.37 7.63 -10.98 -0.08 9.29 16 14 O -0.55 -14.41 16.07 5.55 0.09 -14.32 16 15 C 0.09 1.52 5.08 -5.19 -0.03 1.49 16 16 N -0.46 -7.99 2.27 -115.71 -0.26 -8.25 16 17 C 0.07 1.00 11.27 -16.73 -0.19 0.81 16 18 C -0.22 -3.22 11.08 -37.67 -0.42 -3.64 16 19 C -0.11 -1.86 6.37 -105.14 -0.67 -2.53 16 20 C -0.08 -1.16 10.05 -39.64 -0.40 -1.55 16 21 C -0.15 -2.17 9.97 -39.95 -0.40 -2.57 16 22 C -0.11 -1.67 10.01 -39.54 -0.40 -2.07 16 23 C -0.12 -2.12 10.00 -39.43 -0.39 -2.51 16 24 C 0.11 2.11 6.80 -83.99 -0.57 1.54 16 25 H 0.13 2.45 6.46 -51.93 -0.34 2.11 16 26 H 0.08 1.06 6.68 -51.93 -0.35 0.72 16 27 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 28 H 0.11 1.33 7.39 -51.93 -0.38 0.95 16 29 H 0.10 1.62 7.51 -51.93 -0.39 1.23 16 30 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -32.17 312.30 -7.09 -39.26 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.52 Total: 5.29 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.07 Total: -0.34 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.74 Total: -48.61 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.17 -7.09 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126545007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.338 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds