Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00252 * 3 2 1 5 5 H 1.48501 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47035 * 120.00046 * 3 2 1 7 7 C 1.37871 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00065 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47288 * 184.64564 * 9 7 2 11 11 C 1.46900 * 111.00197 * 160.35281 * 10 9 7 12 12 C 1.53002 * 109.47194 * 288.18722 * 11 10 9 13 13 C 1.52991 * 109.47147 * 179.70862 * 12 11 10 14 14 O 1.42906 * 109.47288 * 180.02562 * 13 12 11 15 15 C 1.46905 * 110.99888 * 284.30677 * 10 9 7 16 16 C 1.50697 * 109.47023 * 169.99815 * 15 10 9 17 17 C 1.38267 * 119.99560 * 270.27373 * 16 15 10 18 18 C 1.38216 * 120.02667 * 180.27776 * 17 16 15 19 19 C 1.38228 * 120.01495 * 359.44925 * 18 17 16 20 20 C 1.38338 * 119.98777 * 0.27481 * 19 18 17 21 21 Cl 1.73601 * 120.01391 * 179.97438 * 20 19 18 22 22 C 1.38195 * 119.99419 * 90.00280 * 16 15 10 23 23 H 0.96996 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47300 * 64.64310 * 9 7 2 25 25 H 1.09002 * 109.47254 * 304.64362 * 9 7 2 26 26 H 1.08998 * 109.47306 * 48.18953 * 11 10 9 27 27 H 1.09004 * 109.47025 * 168.19215 * 11 10 9 28 28 H 1.08999 * 109.46810 * 299.71370 * 12 11 10 29 29 H 1.08999 * 109.46862 * 59.70973 * 12 11 10 30 30 H 1.09004 * 109.47315 * 300.00270 * 13 12 11 31 31 H 1.08999 * 109.47149 * 60.00286 * 13 12 11 32 32 H 0.96691 * 114.00167 * 180.02562 * 14 13 12 33 33 H 1.08998 * 109.46786 * 49.99742 * 15 10 9 34 34 H 1.08994 * 109.46821 * 289.99852 * 15 10 9 35 35 H 1.08003 * 119.98408 * 0.02562 * 17 16 15 36 36 H 1.08005 * 119.99230 * 179.72617 * 18 17 16 37 37 H 1.08007 * 120.00954 * 180.25436 * 19 18 17 38 38 H 1.08003 * 120.00334 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2017 -3.6135 0.1101 11 6 1.5294 -4.8345 0.5739 12 6 1.1635 -4.6851 2.0521 13 6 0.4569 -5.9539 2.5332 14 8 0.1146 -5.8142 3.9136 15 6 2.8933 -3.8453 -1.1650 16 6 4.0240 -4.8188 -0.9534 17 6 5.2816 -4.3546 -0.6149 18 6 6.3205 -5.2465 -0.4262 19 6 6.1001 -6.6040 -0.5647 20 6 4.8407 -7.0696 -0.8978 21 17 4.5633 -8.7744 -1.0726 22 6 3.8024 -6.1758 -1.0922 23 1 -0.4850 0.8400 0.0004 24 1 0.6886 -2.5931 -0.9306 25 1 0.5631 -2.5222 0.8435 26 1 0.6232 -4.9946 -0.0103 27 1 2.1974 -5.6867 0.4494 28 1 2.0702 -4.5301 2.6368 29 1 0.4997 -3.8297 2.1774 30 1 -0.4498 -6.1089 1.9483 31 1 1.1207 -6.8093 2.4079 32 1 -0.3372 -6.5834 4.2866 33 1 3.2912 -2.9021 -1.5392 34 1 2.1908 -4.2564 -1.8899 35 1 5.4532 -3.2943 -0.5018 36 1 7.3037 -4.8829 -0.1661 37 1 6.9110 -7.3012 -0.4133 38 1 2.8191 -6.5386 -1.3527 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134287936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -38.174421 kcal Electronic energy + Delta-G solvation = -19897.211367 eV Core-core repulsion = 16765.046199 eV Total energy + Delta-G solvation = -3132.165169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45264 -37.37394 -36.57067 -36.11243 -32.74725 -32.19477 -30.78507 -30.42049 -27.12177 -25.88468 -23.65215 -22.59295 -21.87976 -20.99478 -19.81322 -17.17541 -16.79075 -16.50235 -15.51401 -15.42387 -15.27475 -14.71873 -14.56893 -13.92845 -13.75896 -13.38122 -13.22766 -13.09255 -12.62959 -12.20139 -11.82354 -11.58445 -11.37543 -11.36085 -11.13767 -10.88467 -10.84750 -10.81064 -10.69646 -10.58517 -10.31718 -9.83224 -9.62541 -9.30420 -8.78255 -8.55124 -8.41800 -7.33712 -6.03122 -4.04657 1.28592 1.36181 2.13800 3.32948 3.37658 3.39985 3.72300 4.32294 4.44516 4.84143 4.90266 5.10266 5.20600 5.30225 5.34107 5.41886 5.46990 5.50852 5.66193 5.73556 5.76901 5.92679 5.93657 6.09904 6.16309 6.26106 6.38203 6.44850 6.61042 6.75362 6.81732 6.92706 7.17933 7.28506 7.76590 7.79318 8.07164 8.13850 8.49255 9.01762 9.59423 11.07440 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.005093 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.850190 B = 5496.943147 C = 7010.811661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.527 5.527 11 C 0.054 3.946 12 C -0.113 4.113 13 C 0.078 3.922 14 O -0.573 6.573 15 C 0.097 3.903 16 C -0.048 4.048 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.036 4.036 21 Cl -0.084 7.084 22 C -0.110 4.110 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.373 0.627 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.615 -15.129 -0.830 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.251 5.251 11 C -0.075 4.075 12 C -0.151 4.151 13 C 0.000 4.000 14 O -0.377 6.377 15 C -0.031 4.031 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.141 4.141 20 C -0.063 4.063 21 Cl -0.055 7.055 22 C -0.129 4.129 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.218 0.782 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.048 -14.417 -0.595 16.523 hybrid contribution -0.551 -0.063 -0.523 0.762 sum 7.498 -14.480 -1.118 16.344 Atomic orbital electron populations 1.69940 1.06055 1.26912 1.50904 1.24973 0.94839 0.99252 0.95451 0.86578 0.79461 0.82855 0.78611 1.20307 1.21404 1.20171 1.21091 0.93439 0.89827 1.50099 0.91957 1.19834 0.90182 0.87197 0.96186 1.62116 1.31616 1.04877 1.26509 1.22003 0.96689 0.94146 0.94651 1.21452 1.01240 0.96771 0.95671 1.22187 0.97781 0.98364 0.81637 1.86532 1.80919 1.44650 1.25648 1.21021 0.92668 0.97682 0.91737 1.20069 0.95660 0.93027 0.96148 1.21256 0.92042 1.00673 0.97046 1.21103 0.99479 0.92284 0.99952 1.20944 0.95310 0.96178 1.01620 1.20842 0.95586 0.84136 1.05709 1.98347 1.96675 1.14186 1.96338 1.20983 0.98130 0.92409 1.01406 0.92857 0.99219 0.94269 0.95794 0.91710 0.90865 0.90425 0.94078 0.94174 0.78159 0.88604 0.94953 0.84914 0.85356 0.85537 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.75 8.61 -34.44 -0.30 -14.04 16 8 H 0.06 1.66 7.66 -52.49 -0.40 1.26 16 9 C 0.19 4.77 4.59 -4.98 -0.02 4.75 16 10 N -0.53 -10.79 4.37 -237.52 -1.04 -11.83 16 11 C 0.05 0.95 4.80 -3.82 -0.02 0.93 16 12 C -0.11 -2.02 5.65 -26.73 -0.15 -2.17 16 13 C 0.08 1.12 7.05 37.15 0.26 1.39 16 14 O -0.57 -8.33 13.66 -35.23 -0.48 -8.81 16 15 C 0.10 1.74 4.94 -4.97 -0.02 1.71 16 16 C -0.05 -0.74 4.93 -104.63 -0.52 -1.25 16 17 C -0.09 -1.30 9.70 -39.58 -0.38 -1.68 16 18 C -0.11 -1.32 10.04 -39.59 -0.40 -1.71 16 19 C -0.12 -1.44 9.83 -39.55 -0.39 -1.83 16 20 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 21 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 22 C -0.11 -1.53 7.63 -39.55 -0.30 -1.83 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H -0.01 -0.27 8.00 -51.93 -0.42 -0.68 16 25 H 0.04 1.06 6.23 -51.93 -0.32 0.74 16 26 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 27 H 0.06 1.03 5.14 -51.93 -0.27 0.76 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.60 6.52 -51.93 -0.34 1.26 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.37 3.35 9.12 45.56 0.42 3.77 16 33 H 0.10 1.84 7.27 -51.93 -0.38 1.46 16 34 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 35 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.13 1.68 7.73 -52.48 -0.41 1.28 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -30.31 331.39 -9.52 -39.83 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.62 Total: 2.59 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.59 Total: -15.00 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.30 Total: -37.41 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.48 Total: -8.81 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.31 -9.52 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134287936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.660 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds